Wall clock time and date at job start Sat Apr 11 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99800 * 2 1 4 4 H 1.48500 * 109.47086 * 240.00214 * 3 2 1 5 5 H 1.48501 * 109.47312 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47028 * 120.00695 * 3 2 1 7 7 C 1.38806 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00291 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99737 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99876 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47083 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47171 * 180.02562 * 11 10 9 13 13 H 1.08999 * 110.88783 * 57.42032 * 12 11 10 14 14 C 1.55151 * 111.00574 * 181.35061 * 12 11 10 15 15 C 1.54330 * 103.02085 * 153.37584 * 14 12 11 16 16 N 1.47018 * 107.26628 * 338.14070 * 15 14 12 17 17 C 1.34779 * 125.64649 * 178.84697 * 16 15 14 18 18 O 1.21550 * 120.00097 * 185.10283 * 17 16 15 19 19 C 1.47887 * 120.00064 * 5.10498 * 17 16 15 20 20 C 1.40576 * 119.70513 * 41.23142 * 19 17 16 21 21 C 1.35813 * 120.73283 * 179.97438 * 20 19 17 22 22 C 1.40542 * 119.98689 * 0.04199 * 21 20 19 23 23 C 1.40819 * 121.14219 * 179.97438 * 22 21 20 24 24 C 1.36551 * 118.20352 * 179.91835 * 23 22 21 25 25 C 1.39419 * 119.93698 * 0.03631 * 24 23 22 26 26 N 1.31021 * 121.71461 * 359.97438 * 25 24 23 27 27 C 1.33743 * 121.34591 * 0.02562 * 26 25 24 28 28 C 1.38398 * 119.70655 * 221.20416 * 19 17 16 29 29 C 1.47417 * 108.70476 * 358.58546 * 16 15 14 30 30 H 0.96996 * 119.99821 * 359.97438 * 1 2 3 31 31 H 0.96994 * 120.00638 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47489 * 59.99541 * 10 9 7 33 33 H 1.09002 * 109.46642 * 299.99696 * 10 9 7 34 34 H 1.09001 * 109.47190 * 59.99533 * 11 10 9 35 35 H 1.09004 * 109.46823 * 299.99757 * 11 10 9 36 36 H 1.09001 * 110.72114 * 271.93630 * 14 12 11 37 37 H 1.09004 * 110.72275 * 35.02947 * 14 12 11 38 38 H 1.09002 * 109.99366 * 218.65877 * 15 14 12 39 39 H 1.09000 * 109.77977 * 97.49777 * 15 14 12 40 40 H 1.07994 * 119.63199 * 359.97438 * 20 19 17 41 41 H 1.08007 * 120.00794 * 180.02562 * 21 20 19 42 42 H 1.08005 * 120.90060 * 359.97438 * 23 22 21 43 43 H 1.08001 * 120.03426 * 180.02562 * 24 23 22 44 44 H 1.08004 * 119.14108 * 180.25922 * 25 24 23 45 45 H 1.08003 * 120.23569 * 359.97438 * 28 19 17 46 46 H 1.08995 * 110.37001 * 143.19688 * 29 16 15 47 47 H 1.09005 * 110.36591 * 265.52112 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 6 1.8288 -6.1447 0.0008 13 1 2.4981 -6.2067 0.8589 14 6 0.8529 -7.3504 -0.0327 15 6 1.6925 -8.4589 -0.7021 16 7 2.7625 -7.7968 -1.4625 17 6 3.7234 -8.4208 -2.1723 18 8 4.6146 -7.7747 -2.6878 19 6 3.6934 -9.8916 -2.3240 20 6 2.4699 -10.5428 -2.5590 21 6 2.4183 -11.8924 -2.7021 22 6 3.5966 -12.6536 -2.6148 23 6 3.5711 -14.0542 -2.7588 24 6 4.7515 -14.7341 -2.6647 25 6 5.9377 -14.0398 -2.4312 26 7 5.9581 -12.7366 -2.2974 27 6 4.8374 -12.0113 -2.3787 28 6 4.8701 -10.6145 -2.2340 29 6 2.6067 -6.3374 -1.3250 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0002 32 1 2.6848 -3.7145 0.8894 33 1 2.6847 -3.7145 -0.8906 34 1 0.4368 -4.7621 -0.8896 35 1 0.4376 -4.7617 0.8904 36 1 0.5628 -7.6399 0.9773 37 1 -0.0266 -7.1182 -0.6334 38 1 1.0670 -9.0448 -1.3756 39 1 2.1255 -9.1054 0.0612 40 1 1.5610 -9.9635 -2.6265 41 1 1.4720 -12.3807 -2.8828 42 1 2.6432 -14.5764 -2.9397 43 1 4.7662 -15.8088 -2.7710 44 1 6.8646 -14.5901 -2.3633 45 1 5.8070 -10.1082 -2.0541 46 1 3.5826 -5.8556 -1.2658 47 1 2.0349 -5.9364 -2.1620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570009913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:40 Heat of formation + Delta-G solvation = 34.420885 kcal Electronic energy + Delta-G solvation = -27616.945617 eV Core-core repulsion = 23764.670447 eV Total energy + Delta-G solvation = -3852.275170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.37269 -40.22243 -38.07030 -37.05501 -35.15290 -33.96226 -33.07164 -31.40344 -30.80186 -30.51411 -29.55527 -27.34988 -25.42140 -24.48894 -23.86556 -23.01925 -22.57422 -21.30588 -20.48546 -19.99311 -18.70577 -17.67321 -17.37677 -17.05644 -16.63414 -16.18289 -15.50832 -15.07397 -14.96317 -14.77303 -14.65421 -14.51945 -14.08622 -13.87449 -13.54625 -13.52605 -13.36129 -13.08531 -12.96067 -12.76913 -12.38128 -12.24460 -12.13925 -11.96392 -11.67923 -11.28857 -11.06553 -11.03810 -10.79936 -10.66262 -10.46680 -10.35607 -10.16585 -9.99293 -9.95190 -9.64705 -9.27128 -8.83345 -8.82088 -8.72969 -6.88952 -5.73566 -3.02004 -0.16702 0.20106 1.45008 2.10690 2.64986 2.86973 3.47334 3.51200 3.52617 3.63218 3.79313 4.03300 4.12769 4.25819 4.37373 4.39686 4.43964 4.56991 4.61050 4.64747 4.75858 4.82566 4.99167 5.07540 5.20226 5.27927 5.36406 5.38836 5.43486 5.52607 5.57587 5.60017 5.66168 5.75574 5.78129 5.82667 5.85509 5.90071 5.98730 6.07685 6.12755 6.24646 6.27963 6.37949 6.39039 6.86135 6.90035 7.29614 7.42799 7.73358 7.91989 8.45766 9.56695 10.14832 10.49375 11.49369 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030307 B = 0.001753 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.668002 B =15970.131255 C =16581.147972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.114 4.114 12 C -0.094 4.094 13 H 0.086 0.914 14 C -0.129 4.129 15 C 0.095 3.905 16 N -0.612 5.612 17 C 0.571 3.429 18 O -0.527 6.527 19 C -0.103 4.103 20 C -0.093 4.093 21 C -0.099 4.099 22 C -0.090 4.090 23 C -0.060 4.060 24 C -0.170 4.170 25 C 0.130 3.870 26 N -0.467 5.467 27 C 0.120 3.880 28 C -0.033 4.033 29 C 0.109 3.891 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.162 0.838 45 H 0.146 0.854 46 H 0.084 0.916 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.818 -35.178 -3.768 35.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.152 4.152 12 C -0.114 4.114 13 H 0.104 0.896 14 C -0.167 4.167 15 C -0.027 4.027 16 N -0.346 5.346 17 C 0.359 3.641 18 O -0.403 6.403 19 C -0.108 4.108 20 C -0.111 4.111 21 C -0.117 4.117 22 C -0.092 4.092 23 C -0.086 4.086 24 C -0.190 4.190 25 C -0.043 4.043 26 N -0.175 5.175 27 C -0.001 4.001 28 C -0.052 4.052 29 C -0.012 4.012 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.159 0.841 43 H 0.157 0.843 44 H 0.179 0.821 45 H 0.164 0.836 46 H 0.103 0.897 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.238 -34.172 -3.933 34.658 hybrid contribution -0.693 0.376 -0.157 0.804 sum 3.545 -33.796 -4.091 34.227 Atomic orbital electron populations 1.69650 1.05099 1.25709 1.57927 1.24737 0.95541 0.97692 1.03091 0.86258 0.78514 0.83493 0.77885 1.21250 1.21684 1.21282 1.19210 0.91055 0.84235 1.42548 0.91231 1.42351 1.05838 1.00070 1.89538 1.20691 0.93573 0.85576 0.97889 1.21684 0.98556 0.92431 1.02564 1.22345 0.96862 0.94974 0.97182 0.89610 1.22744 0.98154 0.94289 1.01502 1.22291 0.89101 0.96220 0.95137 1.48420 1.28501 1.08350 1.49295 1.17874 0.80904 0.86691 0.78618 1.90841 1.34717 1.66863 1.47912 1.19853 0.94124 0.93286 1.03564 1.21137 0.97135 0.94774 0.98080 1.20885 0.97268 0.93650 0.99923 1.18950 0.94589 0.94541 1.01168 1.21525 0.99203 0.92577 0.95285 1.21979 0.93587 1.01865 1.01575 1.23043 0.98289 0.89920 0.93058 1.68046 1.29051 1.07919 1.12467 1.18732 0.88493 0.93768 0.99065 1.21154 0.98211 0.91069 0.94790 1.22470 1.01789 0.79069 0.97921 0.93521 0.78343 0.96440 0.96231 0.91555 0.91254 0.89791 0.90096 0.91006 0.91266 0.84383 0.84543 0.84110 0.84262 0.82112 0.83601 0.89731 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.58 13.06 55.49 0.72 -27.85 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.87 5.60 -59.90 -0.34 -19.20 16 10 C 0.15 3.01 6.11 -4.04 -0.02 2.98 16 11 C -0.11 -1.71 4.84 -26.73 -0.13 -1.84 16 12 C -0.09 -1.11 3.08 -88.47 -0.27 -1.38 16 13 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 14 C -0.13 -1.12 6.42 -24.90 -0.16 -1.28 16 15 C 0.10 0.80 5.82 -3.06 -0.02 0.78 16 16 N -0.61 -7.27 3.32 -171.62 -0.57 -7.84 16 17 C 0.57 7.78 7.42 -12.31 -0.09 7.69 16 18 O -0.53 -9.29 17.15 5.32 0.09 -9.20 16 19 C -0.10 -1.13 5.45 -105.01 -0.57 -1.71 16 20 C -0.09 -0.75 8.34 -39.57 -0.33 -1.08 16 21 C -0.10 -0.67 9.74 -39.58 -0.39 -1.05 16 22 C -0.09 -0.74 5.75 -106.73 -0.61 -1.35 16 23 C -0.06 -0.34 9.88 -39.22 -0.39 -0.72 16 24 C -0.17 -0.85 10.03 -39.75 -0.40 -1.25 16 25 C 0.13 0.89 11.15 -17.46 -0.19 0.69 16 26 N -0.47 -4.82 10.34 -10.98 -0.11 -4.94 16 27 C 0.12 1.26 6.60 -84.87 -0.56 0.70 16 28 C -0.03 -0.37 9.59 -38.68 -0.37 -0.75 16 29 C 0.11 1.44 5.59 -2.53 -0.01 1.42 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.38 10.23 7.67 -40.82 -0.31 9.92 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.40 7.46 -51.93 -0.39 0.02 16 34 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.67 8.04 -51.93 -0.42 0.26 16 38 H 0.07 0.46 5.49 -51.93 -0.29 0.18 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.14 0.88 5.71 -52.49 -0.30 0.58 16 41 H 0.14 0.51 8.06 -52.48 -0.42 0.08 16 42 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 43 H 0.14 0.26 8.06 -52.49 -0.42 -0.16 16 44 H 0.16 0.60 8.06 -52.48 -0.42 0.18 16 45 H 0.15 1.75 8.05 -52.48 -0.42 1.33 16 46 H 0.08 1.27 7.91 -51.93 -0.41 0.86 16 47 H 0.08 1.02 8.00 -51.93 -0.42 0.60 16 LS Contribution 387.17 15.07 5.83 5.83 Total: -1.00 -35.92 387.17 -10.89 -46.81 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.72 Total: 4.27 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -4.77 Total: -5.68 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.30 Total: -59.83 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.92 -10.89 -46.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570009913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.227 kcal (2) G-P(sol) polarization free energy of solvation -35.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds