Wall clock time and date at job start Sat Apr 11 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99800 * 2 1 4 4 H 1.48500 * 109.47086 * 240.00214 * 3 2 1 5 5 H 1.48501 * 109.47312 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47028 * 120.00695 * 3 2 1 7 7 C 1.38806 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00291 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99737 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99876 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47083 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47171 * 180.02562 * 11 10 9 13 13 H 1.08999 * 110.88783 * 57.42032 * 12 11 10 14 14 C 1.55151 * 111.00574 * 181.35061 * 12 11 10 15 15 C 1.54330 * 103.02085 * 153.37584 * 14 12 11 16 16 N 1.47018 * 107.26628 * 338.14070 * 15 14 12 17 17 C 1.34779 * 125.64649 * 178.84697 * 16 15 14 18 18 O 1.21550 * 120.00097 * 185.10283 * 17 16 15 19 19 C 1.47887 * 120.00064 * 5.10498 * 17 16 15 20 20 C 1.40576 * 119.70513 * 41.23142 * 19 17 16 21 21 C 1.35813 * 120.73283 * 179.97438 * 20 19 17 22 22 C 1.40542 * 119.98689 * 0.04199 * 21 20 19 23 23 C 1.40819 * 121.14219 * 179.97438 * 22 21 20 24 24 C 1.36551 * 118.20352 * 179.91835 * 23 22 21 25 25 C 1.39419 * 119.93698 * 0.03631 * 24 23 22 26 26 N 1.31021 * 121.71461 * 359.97438 * 25 24 23 27 27 C 1.33743 * 121.34591 * 0.02562 * 26 25 24 28 28 C 1.38398 * 119.70655 * 221.20416 * 19 17 16 29 29 C 1.47417 * 108.70476 * 358.58546 * 16 15 14 30 30 H 0.96996 * 119.99821 * 359.97438 * 1 2 3 31 31 H 0.96994 * 120.00638 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47489 * 59.99541 * 10 9 7 33 33 H 1.09002 * 109.46642 * 299.99696 * 10 9 7 34 34 H 1.09001 * 109.47190 * 59.99533 * 11 10 9 35 35 H 1.09004 * 109.46823 * 299.99757 * 11 10 9 36 36 H 1.09001 * 110.72114 * 271.93630 * 14 12 11 37 37 H 1.09004 * 110.72275 * 35.02947 * 14 12 11 38 38 H 1.09002 * 109.99366 * 218.65877 * 15 14 12 39 39 H 1.09000 * 109.77977 * 97.49777 * 15 14 12 40 40 H 1.07994 * 119.63199 * 359.97438 * 20 19 17 41 41 H 1.08007 * 120.00794 * 180.02562 * 21 20 19 42 42 H 1.08005 * 120.90060 * 359.97438 * 23 22 21 43 43 H 1.08001 * 120.03426 * 180.02562 * 24 23 22 44 44 H 1.08004 * 119.14108 * 180.25922 * 25 24 23 45 45 H 1.08003 * 120.23569 * 359.97438 * 28 19 17 46 46 H 1.08995 * 110.37001 * 143.19688 * 29 16 15 47 47 H 1.09005 * 110.36591 * 265.52112 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 6 1.8288 -6.1447 0.0008 13 1 2.4981 -6.2067 0.8589 14 6 0.8529 -7.3504 -0.0327 15 6 1.6925 -8.4589 -0.7021 16 7 2.7625 -7.7968 -1.4625 17 6 3.7234 -8.4208 -2.1723 18 8 4.6146 -7.7747 -2.6878 19 6 3.6934 -9.8916 -2.3240 20 6 2.4699 -10.5428 -2.5590 21 6 2.4183 -11.8924 -2.7021 22 6 3.5966 -12.6536 -2.6148 23 6 3.5711 -14.0542 -2.7588 24 6 4.7515 -14.7341 -2.6647 25 6 5.9377 -14.0398 -2.4312 26 7 5.9581 -12.7366 -2.2974 27 6 4.8374 -12.0113 -2.3787 28 6 4.8701 -10.6145 -2.2340 29 6 2.6067 -6.3374 -1.3250 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0002 32 1 2.6848 -3.7145 0.8894 33 1 2.6847 -3.7145 -0.8906 34 1 0.4368 -4.7621 -0.8896 35 1 0.4376 -4.7617 0.8904 36 1 0.5628 -7.6399 0.9773 37 1 -0.0266 -7.1182 -0.6334 38 1 1.0670 -9.0448 -1.3756 39 1 2.1255 -9.1054 0.0612 40 1 1.5610 -9.9635 -2.6265 41 1 1.4720 -12.3807 -2.8828 42 1 2.6432 -14.5764 -2.9397 43 1 4.7662 -15.8088 -2.7710 44 1 6.8646 -14.5901 -2.3633 45 1 5.8070 -10.1082 -2.0541 46 1 3.5826 -5.8556 -1.2658 47 1 2.0349 -5.9364 -2.1620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570009913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:39 Heat of formation + Delta-G solvation = 10.997007 kcal Electronic energy + Delta-G solvation = -27617.961352 eV Core-core repulsion = 23764.670447 eV Total energy + Delta-G solvation = -3853.290905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.02689 -41.10061 -39.07184 -37.78397 -36.86759 -34.61371 -34.49245 -32.84638 -31.67873 -31.13313 -30.72003 -28.65727 -26.56311 -25.29224 -25.02646 -24.17559 -23.16823 -22.73551 -21.38082 -21.00875 -19.45426 -19.12357 -18.34497 -17.97214 -17.46838 -17.13259 -16.67442 -16.37617 -16.01928 -15.56688 -15.45646 -15.34976 -15.27461 -15.07309 -14.85631 -14.74311 -14.22724 -14.08412 -13.93535 -13.75947 -13.38314 -13.08016 -13.03147 -12.94771 -12.81716 -12.78421 -12.56921 -12.24133 -12.19607 -12.00653 -11.71401 -11.58548 -11.52747 -11.41491 -11.21258 -10.93358 -10.50124 -9.92740 -9.71865 -9.35712 -9.01479 -7.97229 -5.26003 -0.76132 -0.36718 0.86199 1.37014 1.45499 1.48611 1.54881 1.73923 2.06191 2.54495 3.04057 3.14144 3.35840 3.39049 3.51960 3.59631 3.60087 3.77886 3.81178 3.94304 4.02887 4.03796 4.15385 4.24448 4.30698 4.34005 4.48767 4.55769 4.56056 4.60757 4.69258 4.75226 4.81549 4.85237 4.87531 4.91290 4.96568 5.08890 5.09557 5.15120 5.19722 5.29122 5.30218 5.37620 5.45742 5.47978 5.50636 5.76659 6.25870 6.34229 6.89410 6.90363 7.31991 8.08085 8.32265 9.25847 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030307 B = 0.001753 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.668002 B =15970.131255 C =16581.147972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.973 3.027 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.253 4.253 8 H 0.070 0.930 9 N -0.746 5.746 10 C 0.147 3.853 11 C -0.098 4.098 12 C -0.086 4.086 13 H 0.085 0.915 14 C -0.118 4.118 15 C 0.092 3.908 16 N -0.608 5.608 17 C 0.565 3.435 18 O -0.585 6.585 19 C -0.108 4.108 20 C -0.103 4.103 21 C -0.076 4.076 22 C -0.103 4.103 23 C -0.055 4.055 24 C -0.165 4.165 25 C 0.127 3.873 26 N -0.516 5.516 27 C 0.097 3.903 28 C -0.061 4.061 29 C 0.107 3.893 30 H 0.253 0.747 31 H 0.376 0.624 32 H 0.015 0.985 33 H 0.012 0.988 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.159 0.841 41 H 0.180 0.820 42 H 0.181 0.819 43 H 0.179 0.821 44 H 0.186 0.814 45 H 0.117 0.883 46 H 0.054 0.946 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.762 -38.951 -3.645 39.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.802 3.198 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.088 0.912 9 N -0.389 5.389 10 C 0.020 3.980 11 C -0.136 4.136 12 C -0.105 4.105 13 H 0.104 0.896 14 C -0.155 4.155 15 C -0.029 4.029 16 N -0.340 5.340 17 C 0.355 3.645 18 O -0.466 6.466 19 C -0.113 4.113 20 C -0.120 4.120 21 C -0.094 4.094 22 C -0.106 4.106 23 C -0.080 4.080 24 C -0.184 4.184 25 C -0.046 4.046 26 N -0.225 5.225 27 C -0.023 4.023 28 C -0.081 4.081 29 C -0.016 4.016 30 H 0.061 0.939 31 H 0.208 0.792 32 H 0.033 0.967 33 H 0.030 0.970 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.176 0.824 41 H 0.198 0.802 42 H 0.199 0.801 43 H 0.196 0.804 44 H 0.202 0.798 45 H 0.135 0.865 46 H 0.072 0.928 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.175 -37.989 -3.783 38.239 hybrid contribution 0.036 1.375 -0.207 1.391 sum 2.211 -36.614 -3.991 36.897 Atomic orbital electron populations 1.69795 1.06435 1.26231 1.59208 1.25555 0.96486 1.01016 1.03471 0.85223 0.77285 0.79208 0.78112 1.20683 1.21634 1.20395 1.19594 0.91399 0.85694 1.41756 0.91209 1.42557 1.05696 1.01199 1.89448 1.20873 0.94522 0.85438 0.97138 1.21514 0.97447 0.91775 1.02895 1.22203 0.97352 0.94898 0.96087 0.89640 1.22757 0.97396 0.92119 1.03239 1.22586 0.88332 0.96300 0.95708 1.48488 1.28858 1.07897 1.48762 1.18429 0.80279 0.87920 0.77907 1.90794 1.37037 1.68305 1.50462 1.19697 0.95457 0.91323 1.04837 1.21273 0.96229 0.95674 0.98870 1.21340 0.98349 0.92880 0.96857 1.19275 0.93955 0.96200 1.01137 1.22016 1.01073 0.91282 0.93662 1.22408 0.92522 1.03690 0.99777 1.23664 1.00488 0.89072 0.91331 1.68009 1.29834 1.09784 1.14885 1.18813 0.90005 0.93263 1.00173 1.21035 0.97505 0.92276 0.97234 1.22365 1.00337 0.80150 0.98730 0.93862 0.79211 0.96679 0.97010 0.91448 0.90570 0.87405 0.88997 0.87981 0.90030 0.82407 0.80234 0.80140 0.80411 0.79755 0.86464 0.92781 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.81 13.06 21.65 0.28 -59.53 16 2 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 3 Si 0.97 47.38 29.55 68.60 2.03 49.41 16 4 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.25 -14.72 9.99 84.03 0.84 -13.88 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 9 N -0.75 -39.13 5.60 -343.44 -1.92 -41.06 16 10 C 0.15 6.01 6.11 86.38 0.53 6.54 16 11 C -0.10 -2.89 4.84 30.60 0.15 -2.75 16 12 C -0.09 -1.97 3.08 -9.40 -0.03 -1.99 16 13 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 14 C -0.12 -1.69 6.42 31.78 0.20 -1.49 16 15 C 0.09 1.32 5.82 86.73 0.50 1.82 16 16 N -0.61 -14.64 3.32 -815.15 -2.71 -17.35 16 17 C 0.56 16.49 7.42 86.80 0.64 17.14 16 18 O -0.58 -22.92 17.15 -3.87 -0.07 -22.99 16 19 C -0.11 -2.48 5.45 -20.11 -0.11 -2.59 16 20 C -0.10 -1.44 8.34 22.28 0.19 -1.26 16 21 C -0.08 -0.75 9.74 22.27 0.22 -0.53 16 22 C -0.10 -1.44 5.75 -21.23 -0.12 -1.56 16 23 C -0.05 -0.38 9.88 22.51 0.22 -0.16 16 24 C -0.16 -1.02 10.03 22.16 0.22 -0.80 16 25 C 0.13 1.54 11.15 85.10 0.95 2.49 16 26 N -0.52 -11.00 10.34 -188.65 -1.95 -12.95 16 27 C 0.10 2.10 6.60 40.25 0.27 2.37 16 28 C -0.06 -1.54 9.59 22.85 0.22 -1.32 16 29 C 0.11 2.93 5.59 86.86 0.49 3.41 16 30 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 31 H 0.38 20.47 7.67 -92.71 -0.71 19.76 16 32 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.01 0.51 7.46 -2.39 -0.02 0.49 16 34 H 0.07 1.99 8.10 -2.39 -0.02 1.97 16 35 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 36 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.19 8.04 -2.38 -0.02 1.17 16 38 H 0.10 0.91 5.49 -2.39 -0.01 0.89 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.16 1.48 5.71 -2.91 -0.02 1.47 16 41 H 0.18 0.21 8.06 -2.91 -0.02 0.18 16 42 H 0.18 -0.22 8.06 -2.91 -0.02 -0.24 16 43 H 0.18 -0.29 8.06 -2.91 -0.02 -0.31 16 44 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 45 H 0.12 3.42 8.05 -2.91 -0.02 3.40 16 46 H 0.05 1.79 7.91 -2.39 -0.02 1.77 16 47 H 0.07 1.97 8.00 -2.38 -0.02 1.95 16 Total: -1.00 -84.20 387.17 1.78 -82.42 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.28 Total: 20.43 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 5.84 Total: 1.61 kcal Atomic # 7 Polarization: -124.58 SS G_CDS: -6.30 Total: -130.89 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.07 Total: -22.99 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -84.20 1.78 -82.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570009913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.420 kcal (2) G-P(sol) polarization free energy of solvation -84.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds