Wall clock time and date at job start Sat Apr 11 2020 05:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00409 * 2 1 4 4 H 1.48505 * 109.46888 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47025 * 119.99454 * 3 2 1 6 6 H 1.48497 * 109.47332 * 240.00044 * 3 2 1 7 7 C 1.38814 * 119.99544 * 180.27395 * 2 1 3 8 8 H 1.08004 * 119.99591 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00303 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99947 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46796 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46871 * 179.97438 * 11 10 9 13 13 H 1.08998 * 110.88720 * 305.70398 * 12 11 10 14 14 C 1.55160 * 111.00434 * 181.82174 * 12 11 10 15 15 C 1.54323 * 102.94299 * 206.42798 * 14 12 11 16 16 N 1.47020 * 107.27207 * 22.18979 * 15 14 12 17 17 C 1.34779 * 125.64828 * 181.10090 * 16 15 14 18 18 O 1.21547 * 119.99876 * 174.56492 * 17 16 15 19 19 C 1.47879 * 119.99997 * 354.56279 * 17 16 15 20 20 C 1.40579 * 119.70664 * 319.01057 * 19 17 16 21 21 C 1.35807 * 120.73658 * 179.97438 * 20 19 17 22 22 C 1.40548 * 119.98176 * 359.97438 * 21 20 19 23 23 C 1.40821 * 121.13147 * 179.97438 * 22 21 20 24 24 C 1.36561 * 118.19982 * 180.02562 * 23 22 21 25 25 C 1.39424 * 119.93436 * 0.02562 * 24 23 22 26 26 N 1.31015 * 121.71609 * 359.97438 * 25 24 23 27 27 C 1.33755 * 121.35061 * 0.02562 * 26 25 24 28 28 C 1.38404 * 119.70920 * 138.74074 * 19 17 16 29 29 C 1.47470 * 108.72317 * 1.02947 * 16 15 14 30 30 H 0.97007 * 119.99948 * 359.72873 * 1 2 3 31 31 H 0.96996 * 119.99936 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.47107 * 299.99946 * 10 9 7 33 33 H 1.08995 * 109.47061 * 60.00424 * 10 9 7 34 34 H 1.08994 * 109.47414 * 299.99961 * 11 10 9 35 35 H 1.09008 * 109.47004 * 60.00192 * 11 10 9 36 36 H 1.09000 * 110.72073 * 324.79104 * 14 12 11 37 37 H 1.09002 * 110.72024 * 88.06370 * 14 12 11 38 38 H 1.08994 * 109.88591 * 141.60981 * 15 14 12 39 39 H 1.09005 * 109.87695 * 262.77884 * 15 14 12 40 40 H 1.07999 * 119.62903 * 359.97438 * 20 19 17 41 41 H 1.08005 * 120.01054 * 179.97438 * 21 20 19 42 42 H 1.08001 * 120.90485 * 0.02562 * 23 22 21 43 43 H 1.08000 * 120.03377 * 179.97438 * 24 23 22 44 44 H 1.08003 * 119.13785 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.22975 * 359.97438 * 28 19 17 46 46 H 1.09003 * 110.40290 * 217.08229 * 29 16 15 47 47 H 1.08998 * 110.35148 * 94.74285 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1039 1.6963 1.2126 6 1 3.1040 1.6963 -1.2125 7 6 2.0101 -1.2022 -0.0057 8 1 3.0902 -1.2022 -0.0053 9 7 1.3254 -2.3881 -0.0119 10 6 2.0579 -3.6568 -0.0186 11 6 1.0636 -4.8197 -0.0240 12 6 1.8286 -6.1447 -0.0316 13 1 2.5370 -6.1797 -0.8592 14 6 0.8528 -7.3499 -0.0833 15 6 1.6640 -8.4803 0.5843 16 7 2.6932 -7.8444 1.4196 17 6 3.6209 -8.4919 2.1522 18 8 4.4870 -7.8637 2.7288 19 6 3.5849 -9.9667 2.2544 20 6 2.3519 -10.6246 2.4064 21 6 2.2944 -11.9781 2.5019 22 6 3.4764 -12.7368 2.4483 23 6 3.4450 -14.1413 2.5454 24 6 4.6293 -14.8188 2.4868 25 6 5.8250 -14.1179 2.3351 26 7 5.8508 -12.8111 2.2451 27 6 4.7268 -12.0879 2.2954 28 6 4.7649 -10.6875 2.1939 29 6 2.5440 -6.3805 1.3220 30 1 -0.4850 0.8401 0.0040 31 1 0.3555 -2.3880 -0.0119 32 1 2.6846 -3.7099 -0.9088 33 1 2.6845 -3.7193 0.8711 34 1 0.4373 -4.7664 0.8664 35 1 0.4366 -4.7574 -0.9135 36 1 -0.0528 -7.1376 0.4850 37 1 0.6108 -7.6062 -1.1148 38 1 1.0080 -9.0907 1.2048 39 1 2.1362 -9.0984 -0.1794 40 1 1.4401 -10.0472 2.4478 41 1 1.3408 -12.4715 2.6189 42 1 2.5098 -14.6684 2.6631 43 1 4.6397 -15.8963 2.5586 44 1 6.7542 -14.6667 2.2906 45 1 5.7085 -10.1765 2.0721 46 1 3.5214 -5.8979 1.3236 47 1 1.9338 -6.0061 2.1439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570009915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:42 Heat of formation + Delta-G solvation = 11.040043 kcal Electronic energy + Delta-G solvation = -27605.611082 eV Core-core repulsion = 23752.322043 eV Total energy + Delta-G solvation = -3853.289039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.02626 -41.09812 -39.06745 -37.78449 -36.86838 -34.61177 -34.49168 -32.84786 -31.67738 -31.13355 -30.71746 -28.66966 -26.55610 -25.29150 -25.02454 -24.16113 -23.16756 -22.73178 -21.38585 -21.02354 -19.45356 -19.12467 -18.34441 -17.97029 -17.46771 -17.11939 -16.67926 -16.37100 -16.01429 -15.56989 -15.45558 -15.35063 -15.27714 -15.07322 -14.86523 -14.74311 -14.22966 -14.07629 -13.93689 -13.75971 -13.38041 -13.07904 -13.03093 -12.94651 -12.81311 -12.78289 -12.56790 -12.25074 -12.19011 -12.00725 -11.71360 -11.58442 -11.53257 -11.41244 -11.21135 -10.93252 -10.50123 -9.92780 -9.71850 -9.35744 -9.01470 -7.97185 -5.25917 -0.76178 -0.36685 0.86147 1.36994 1.45559 1.48716 1.54943 1.73779 2.06390 2.54589 3.04111 3.14175 3.35911 3.39106 3.52031 3.59829 3.60041 3.77682 3.81010 3.94297 4.02878 4.03807 4.15628 4.24428 4.30836 4.33709 4.49002 4.55692 4.56027 4.60678 4.69235 4.75493 4.81503 4.85238 4.87668 4.91284 4.96710 5.08841 5.09783 5.14824 5.19961 5.28914 5.30214 5.37756 5.45707 5.48127 5.50645 5.76658 6.25864 6.34208 6.89389 6.90356 7.32004 8.08174 8.32300 9.25898 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030619 B = 0.001745 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.243810 B =16040.977303 C =16643.974137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.973 3.027 4 H -0.291 1.291 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.253 4.253 8 H 0.070 0.930 9 N -0.746 5.746 10 C 0.147 3.853 11 C -0.098 4.098 12 C -0.086 4.086 13 H 0.085 0.915 14 C -0.117 4.117 15 C 0.092 3.908 16 N -0.608 5.608 17 C 0.565 3.435 18 O -0.585 6.585 19 C -0.108 4.108 20 C -0.103 4.103 21 C -0.076 4.076 22 C -0.103 4.103 23 C -0.055 4.055 24 C -0.165 4.165 25 C 0.127 3.873 26 N -0.516 5.516 27 C 0.097 3.903 28 C -0.061 4.061 29 C 0.107 3.893 30 H 0.253 0.747 31 H 0.376 0.624 32 H 0.016 0.984 33 H 0.011 0.989 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.159 0.841 41 H 0.180 0.820 42 H 0.181 0.819 43 H 0.178 0.822 44 H 0.186 0.814 45 H 0.117 0.883 46 H 0.054 0.946 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.607 -39.053 2.747 39.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.802 3.198 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.088 0.912 9 N -0.389 5.389 10 C 0.020 3.980 11 C -0.136 4.136 12 C -0.106 4.106 13 H 0.103 0.897 14 C -0.155 4.155 15 C -0.029 4.029 16 N -0.340 5.340 17 C 0.355 3.645 18 O -0.466 6.466 19 C -0.113 4.113 20 C -0.120 4.120 21 C -0.094 4.094 22 C -0.106 4.106 23 C -0.080 4.080 24 C -0.184 4.184 25 C -0.046 4.046 26 N -0.225 5.225 27 C -0.023 4.023 28 C -0.080 4.080 29 C -0.016 4.016 30 H 0.061 0.939 31 H 0.208 0.792 32 H 0.034 0.966 33 H 0.029 0.971 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.176 0.824 41 H 0.198 0.802 42 H 0.199 0.801 43 H 0.196 0.804 44 H 0.202 0.798 45 H 0.135 0.865 46 H 0.072 0.928 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.010 -38.097 2.971 38.265 hybrid contribution 0.029 1.365 0.226 1.384 sum 2.039 -36.732 3.196 36.927 Atomic orbital electron populations 1.69796 1.06444 1.26229 1.59202 1.25557 0.96486 1.01024 1.03472 0.85220 0.77281 0.79195 0.78115 1.21649 1.20691 1.20374 1.19597 0.91404 0.85693 1.41759 0.91196 1.42557 1.05697 1.01207 1.89446 1.20871 0.94518 0.85430 0.97137 1.21512 0.97456 0.91778 1.02883 1.22207 0.97754 0.94838 0.95772 0.89674 1.22762 0.97625 0.91853 1.03258 1.22587 0.89486 0.96613 0.94248 1.48502 1.31905 1.07778 1.45833 1.18425 0.79981 0.87860 0.78264 1.90793 1.37672 1.69536 1.48595 1.19700 0.95384 0.91274 1.04965 1.21276 0.96173 0.95627 0.98967 1.21341 0.98404 0.92900 0.96786 1.19277 0.93855 0.96159 1.01278 1.22019 1.01190 0.91302 0.93526 1.22412 0.92435 1.03705 0.99848 1.23663 1.00543 0.89022 0.91326 1.68009 1.30171 1.09905 1.14431 1.18812 0.89894 0.93234 1.00316 1.21033 0.97599 0.92284 0.97133 1.22379 1.00516 0.79944 0.98738 0.93866 0.79215 0.96611 0.97070 0.91497 0.90535 0.88953 0.87425 0.87970 0.90050 0.82394 0.80233 0.80140 0.80413 0.79756 0.86466 0.92783 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.81 13.06 21.65 0.28 -59.53 16 2 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.97 47.35 29.55 68.60 2.03 49.38 16 4 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 7 C -0.25 -14.72 9.99 84.03 0.84 -13.88 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 9 N -0.75 -39.12 5.60 -343.45 -1.92 -41.04 16 10 C 0.15 6.01 6.14 86.38 0.53 6.54 16 11 C -0.10 -2.89 4.84 30.59 0.15 -2.74 16 12 C -0.09 -1.97 3.04 -9.40 -0.03 -2.00 16 13 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 14 C -0.12 -1.69 6.42 31.78 0.20 -1.48 16 15 C 0.09 1.31 5.81 86.73 0.50 1.82 16 16 N -0.61 -14.59 3.33 -815.04 -2.71 -17.30 16 17 C 0.56 16.45 7.42 86.80 0.64 17.10 16 18 O -0.58 -22.87 17.15 -3.86 -0.07 -22.94 16 19 C -0.11 -2.48 5.46 -20.11 -0.11 -2.59 16 20 C -0.10 -1.44 8.34 22.28 0.19 -1.25 16 21 C -0.08 -0.75 9.74 22.27 0.22 -0.53 16 22 C -0.10 -1.44 5.75 -21.23 -0.12 -1.56 16 23 C -0.05 -0.38 9.89 22.51 0.22 -0.16 16 24 C -0.16 -1.02 10.03 22.16 0.22 -0.80 16 25 C 0.13 1.54 11.15 85.10 0.95 2.49 16 26 N -0.52 -11.00 10.34 -188.65 -1.95 -12.95 16 27 C 0.10 2.10 6.60 40.25 0.27 2.36 16 28 C -0.06 -1.53 9.59 22.85 0.22 -1.32 16 29 C 0.11 2.92 5.74 86.85 0.50 3.41 16 30 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 31 H 0.38 20.46 7.67 -92.71 -0.71 19.75 16 32 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.01 0.48 7.59 -2.39 -0.02 0.46 16 34 H 0.07 1.98 8.04 -2.39 -0.02 1.96 16 35 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.09 1.19 8.04 -2.39 -0.02 1.17 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.12 16 38 H 0.10 0.90 5.48 -2.39 -0.01 0.89 16 39 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.16 1.47 5.71 -2.91 -0.02 1.46 16 41 H 0.18 0.20 8.06 -2.91 -0.02 0.18 16 42 H 0.18 -0.22 8.06 -2.91 -0.02 -0.24 16 43 H 0.18 -0.29 8.06 -2.91 -0.02 -0.31 16 44 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 45 H 0.12 3.41 8.06 -2.91 -0.02 3.39 16 46 H 0.05 1.78 7.95 -2.39 -0.02 1.76 16 47 H 0.07 1.97 7.96 -2.39 -0.02 1.95 16 Total: -1.00 -84.17 387.35 1.79 -82.37 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.28 Total: 20.42 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 5.86 Total: 1.58 kcal Atomic # 7 Polarization: -124.51 SS G_CDS: -6.30 Total: -130.82 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.07 Total: -22.94 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -84.17 1.79 -82.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570009915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.413 kcal (2) G-P(sol) polarization free energy of solvation -84.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds