Wall clock time and date at job start Sat Apr 11 2020 05:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 119.99743 * 2 1 4 4 H 1.48503 * 109.47298 * 270.00130 * 3 2 1 5 5 H 1.48505 * 109.47249 * 29.99839 * 3 2 1 6 6 H 1.48504 * 109.47212 * 150.00066 * 3 2 1 7 7 C 1.38816 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99991 * 190.85784 * 7 2 1 9 9 N 1.36937 * 119.99686 * 10.85903 * 7 2 1 10 10 C 1.46686 * 121.33706 * 28.09990 * 9 7 2 11 11 C 1.50805 * 109.67355 * 135.60656 * 10 9 7 12 12 C 1.38832 * 117.80682 * 191.52748 * 11 10 9 13 13 C 1.37962 * 120.51011 * 180.52081 * 12 11 10 14 14 C 1.38260 * 119.71237 * 0.04485 * 13 12 11 15 15 C 1.37909 * 119.83049 * 359.74166 * 14 13 12 16 16 C 1.37674 * 122.34714 * 11.60898 * 11 10 9 17 17 C 1.50600 * 122.86173 * 358.46889 * 16 11 10 18 18 C 1.47229 * 121.32788 * 208.12225 * 9 7 2 19 19 H 1.08999 * 109.76826 * 124.52781 * 18 9 7 20 20 C 1.53000 * 109.77422 * 3.78998 * 18 9 7 21 21 N 1.46502 * 109.46928 * 54.99942 * 20 18 9 22 22 C 1.34771 * 119.99803 * 180.02562 * 21 20 18 23 23 O 1.21280 * 120.00156 * 0.02562 * 22 21 20 24 24 C 1.50704 * 120.00125 * 179.97438 * 22 21 20 25 25 C 1.50695 * 109.47200 * 179.97438 * 24 22 21 26 26 C 1.34855 * 125.89499 * 274.95948 * 25 24 22 27 27 C 1.40889 * 107.42109 * 180.02562 * 26 25 24 28 28 C 1.34860 * 107.41511 * 0.02562 * 27 26 25 29 29 N 1.36340 * 108.21717 * 359.97438 * 28 27 26 30 30 H 0.96998 * 125.63438 * 179.97438 * 29 28 27 31 31 H 0.96997 * 120.00675 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.43578 * 255.67611 * 10 9 7 33 33 H 1.09001 * 109.43146 * 15.55065 * 10 9 7 34 34 H 1.08006 * 119.74738 * 0.49526 * 12 11 10 35 35 H 1.07994 * 120.14295 * 180.02562 * 13 12 11 36 36 H 1.08001 * 120.08957 * 179.71763 * 14 13 12 37 37 H 1.08009 * 119.71095 * 179.97438 * 15 14 13 38 38 H 1.08996 * 109.20210 * 259.84205 * 17 16 11 39 39 H 1.08990 * 109.19976 * 140.54941 * 17 16 11 40 40 H 1.08994 * 109.46890 * 295.00262 * 20 18 9 41 41 H 1.08996 * 109.47236 * 174.99831 * 20 18 9 42 42 H 0.97002 * 120.00068 * 359.97438 * 21 20 18 43 43 H 1.09001 * 109.47004 * 59.99700 * 24 22 21 44 44 H 1.08996 * 109.47109 * 300.00063 * 24 22 21 45 45 H 1.07995 * 126.28884 * 0.02562 * 26 25 24 46 46 H 1.07992 * 126.29429 * 180.02562 * 27 26 25 47 47 H 1.07998 * 125.88898 * 180.26741 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0758 -1.2104 0.1767 9 7 1.3440 -2.3775 -0.2224 10 6 0.1205 -2.4195 -1.0305 11 6 0.1789 -3.5899 -1.9796 12 6 -0.7717 -3.6528 -2.9895 13 6 -0.7766 -4.7047 -3.8822 14 6 0.1722 -5.7039 -3.7692 15 6 1.1198 -5.6402 -2.7692 16 6 1.1306 -4.5789 -1.8719 17 6 2.2117 -4.5620 -0.8236 18 6 1.8268 -3.6497 0.3400 19 1 1.0370 -4.1156 0.9292 20 6 3.0494 -3.3942 1.2236 21 7 2.7145 -2.3983 2.2446 22 6 3.6441 -2.0137 3.1413 23 8 4.7582 -2.4915 3.1027 24 6 3.2998 -0.9888 4.1912 25 6 4.5040 -0.7373 5.0616 26 6 4.8662 -1.4628 6.1391 27 6 6.0438 -0.8889 6.6575 28 6 6.3561 0.1659 5.8775 29 7 5.4147 0.2638 4.8961 30 1 5.3957 0.9351 4.1962 31 1 -0.4851 0.8400 -0.0004 32 1 -0.7436 -2.5268 -0.3749 33 1 0.0304 -1.4946 -1.6002 34 1 -1.5134 -2.8726 -3.0766 35 1 -1.5186 -4.7475 -4.6657 36 1 0.1712 -6.5324 -4.4620 37 1 1.8599 -6.4220 -2.6825 38 1 3.1385 -4.2019 -1.2701 39 1 2.3644 -5.5744 -0.4499 40 1 3.8701 -3.0232 0.6098 41 1 3.3488 -4.3239 1.7073 42 1 1.8238 -2.0153 2.2747 43 1 2.4791 -1.3595 4.8053 44 1 3.0003 -0.0593 3.7072 45 1 4.3487 -2.3253 6.5323 46 1 6.5951 -1.2308 7.5209 47 1 7.2079 0.8175 6.0050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570271093.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:50 Heat of formation + Delta-G solvation = 57.368292 kcal Electronic energy + Delta-G solvation = -29319.868026 eV Core-core repulsion = 25468.587931 eV Total energy + Delta-G solvation = -3851.280096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.92381 -39.48780 -38.74645 -36.57228 -33.69873 -32.95104 -31.72781 -31.42479 -30.69089 -30.18986 -28.96387 -26.68863 -25.66488 -24.84670 -22.88419 -21.58361 -21.20782 -20.46014 -20.15642 -19.69874 -19.07618 -17.44552 -16.80924 -16.26333 -16.02132 -15.49171 -15.11025 -14.66784 -14.60110 -14.31883 -14.08200 -13.86592 -13.50865 -13.42279 -13.22088 -13.00673 -12.72621 -12.63425 -12.46656 -12.36156 -12.12581 -12.02784 -11.67547 -11.60949 -11.31473 -11.12876 -10.98786 -10.90249 -10.74872 -10.57001 -10.24425 -10.06788 -9.76531 -9.31645 -8.84243 -8.62735 -8.29832 -8.23454 -7.88804 -7.80539 -6.88033 -5.98955 -3.43103 1.83918 1.91493 2.44356 3.18861 3.20953 3.24138 3.29056 3.31096 3.51897 3.99505 4.26030 4.29389 4.99797 5.10149 5.16864 5.24277 5.29943 5.33473 5.42810 5.44287 5.50799 5.55495 5.63699 5.69557 5.77380 5.88531 5.91604 5.93558 6.02328 6.06114 6.16501 6.28071 6.33882 6.42266 6.51434 6.52594 6.59711 6.78574 6.91694 6.92723 7.10024 7.13564 7.17268 7.21174 7.34498 7.46515 7.60004 7.65467 7.77922 8.19013 8.28109 8.89116 9.00523 9.60037 10.19137 11.09999 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014737 B = 0.003264 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.485575 B = 8575.973724 C = 9994.797942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.007 3.993 3 Si 0.897 3.103 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.589 5.589 10 C 0.208 3.792 11 C -0.078 4.078 12 C -0.123 4.123 13 C -0.130 4.130 14 C -0.140 4.140 15 C -0.127 4.127 16 C -0.068 4.068 17 C -0.090 4.090 18 C 0.158 3.842 19 H 0.043 0.957 20 C 0.138 3.862 21 N -0.694 5.694 22 C 0.508 3.492 23 O -0.553 6.553 24 C -0.076 4.076 25 C 0.047 3.953 26 C -0.187 4.187 27 C -0.202 4.202 28 C -0.020 4.020 29 N -0.553 5.553 30 H 0.412 0.588 31 H 0.256 0.744 32 H 0.043 0.957 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.416 0.584 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.150 -4.320 3.487 5.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.727 3.273 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.312 5.312 10 C 0.083 3.917 11 C -0.079 4.079 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.158 4.158 15 C -0.146 4.146 16 C -0.068 4.068 17 C -0.130 4.130 18 C 0.051 3.949 19 H 0.060 0.940 20 C 0.013 3.987 21 N -0.345 5.345 22 C 0.293 3.707 23 O -0.432 6.432 24 C -0.117 4.117 25 C -0.067 4.067 26 C -0.212 4.212 27 C -0.227 4.227 28 C -0.151 4.151 29 N -0.147 5.147 30 H 0.247 0.753 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.114 0.886 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.254 0.746 43 H 0.129 0.871 44 H 0.117 0.883 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.828 -4.382 3.372 6.210 hybrid contribution -0.016 1.387 -0.675 1.542 sum 2.812 -2.995 2.697 4.914 Atomic orbital electron populations 1.69947 1.04990 1.25704 1.54238 1.25034 0.95332 0.97978 1.00870 0.86382 0.78930 0.83936 0.78088 1.21359 1.21572 1.20623 1.19126 0.91304 0.83219 1.43605 0.91074 1.44036 1.28533 1.02311 1.56329 1.19777 0.88608 0.93045 0.90317 1.21011 0.93265 0.97226 0.96444 1.21118 0.99204 0.98407 0.95475 1.20953 0.99192 0.95193 0.99508 1.20851 0.96684 0.99167 0.99111 1.21130 0.99073 0.98420 0.95940 1.19489 0.96517 0.93998 0.96805 1.20880 0.96899 0.99518 0.95695 1.20721 0.93972 0.88590 0.91637 0.93961 1.21206 0.97495 0.90727 0.89222 1.45896 1.16052 1.42664 1.29927 1.20312 0.85111 0.82910 0.82323 1.90670 1.21740 1.56897 1.73931 1.20142 0.95480 1.00214 0.95830 1.19634 0.94655 0.93239 0.99156 1.20558 0.99689 1.02125 0.98822 1.20802 0.99925 0.99110 1.02895 1.21705 0.96745 1.03210 0.93412 1.41930 1.21554 1.25870 1.25351 0.75252 0.93376 0.93979 0.88596 0.86477 0.86990 0.87118 0.87076 0.90843 0.91839 0.91781 0.92496 0.74631 0.87113 0.88313 0.85175 0.85137 0.82347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.88 11.06 55.49 0.61 -22.27 16 2 C 0.01 0.16 5.08 -17.43 -0.09 0.07 16 3 Si 0.90 19.85 29.57 -169.99 -5.03 14.83 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.24 -5.69 6.96 -15.06 -0.10 -5.80 16 8 H 0.07 1.73 6.19 -52.49 -0.32 1.41 16 9 N -0.59 -12.68 2.85 -166.39 -0.47 -13.16 16 10 C 0.21 4.49 4.80 -5.04 -0.02 4.47 16 11 C -0.08 -1.49 5.82 -104.56 -0.61 -2.10 16 12 C -0.12 -2.11 9.62 -39.46 -0.38 -2.49 16 13 C -0.13 -1.95 10.05 -39.67 -0.40 -2.35 16 14 C -0.14 -2.03 10.04 -39.69 -0.40 -2.43 16 15 C -0.13 -1.97 9.59 -39.43 -0.38 -2.35 16 16 C -0.07 -1.20 5.76 -104.60 -0.60 -1.80 16 17 C -0.09 -1.51 5.21 -28.04 -0.15 -1.65 16 18 C 0.16 2.89 3.02 -67.64 -0.20 2.68 16 19 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 20 C 0.14 2.47 4.45 -4.04 -0.02 2.45 16 21 N -0.69 -12.45 4.01 -60.30 -0.24 -12.69 16 22 C 0.51 9.17 7.82 -10.99 -0.09 9.09 16 23 O -0.55 -11.79 16.03 5.56 0.09 -11.70 16 24 C -0.08 -1.13 6.24 -29.04 -0.18 -1.31 16 25 C 0.05 0.72 5.66 -81.79 -0.46 0.25 16 26 C -0.19 -2.85 10.76 -39.78 -0.43 -3.28 16 27 C -0.20 -2.80 10.86 -39.78 -0.43 -3.23 16 28 C -0.02 -0.25 11.94 -16.75 -0.20 -0.45 16 29 N -0.55 -7.69 6.07 -9.12 -0.06 -7.75 16 30 H 0.41 4.96 8.96 -40.82 -0.37 4.60 16 31 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 32 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.10 2.34 6.46 -51.93 -0.34 2.00 16 34 H 0.12 1.87 8.05 -52.48 -0.42 1.45 16 35 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 36 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.11 1.47 8.05 -52.48 -0.42 1.04 16 38 H 0.07 1.26 8.01 -51.93 -0.42 0.85 16 39 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 40 H 0.06 1.26 7.31 -51.93 -0.38 0.88 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.42 7.70 7.34 -40.82 -0.30 7.41 16 43 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 46 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 47 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 382.41 15.07 5.76 5.76 Total: -1.00 -28.99 382.41 -11.23 -40.22 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -6.75 Total: 16.98 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -5.14 Total: -10.22 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.16 Total: -55.87 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.83 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.99 -11.23 -40.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570271093.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.586 kcal (2) G-P(sol) polarization free energy of solvation -28.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds