Wall clock time and date at job start Sat Apr 11 2020 05:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99790 * 2 1 4 4 H 1.48494 * 109.47509 * 270.00442 * 3 2 1 5 5 H 1.48503 * 109.46666 * 30.00296 * 3 2 1 6 6 H 1.48495 * 109.47061 * 149.99951 * 3 2 1 7 7 C 1.37868 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00025 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00202 * 179.72465 * 7 2 1 10 10 C 1.52995 * 109.47110 * 179.97438 * 9 7 2 11 11 N 1.46508 * 109.46946 * 179.97438 * 10 9 7 12 12 C 1.35471 * 124.78827 * 264.69452 * 11 10 9 13 13 C 1.36372 * 109.76676 * 179.85434 * 12 11 10 14 14 C 1.46910 * 126.76739 * 180.13292 * 13 12 11 15 15 O 1.21671 * 120.00052 * 139.86567 * 14 13 12 16 16 N 1.34785 * 120.00317 * 319.86769 * 14 13 12 17 17 C 1.45945 * 119.94764 * 184.26623 * 16 14 13 18 18 C 1.51755 * 111.21915 * 142.82638 * 17 16 14 19 19 N 1.45107 * 113.34761 * 55.81848 * 18 17 16 20 20 C 1.46059 * 114.96596 * 310.62985 * 19 18 17 21 21 H 1.09006 * 115.47195 * 235.86299 * 20 19 18 22 22 C 1.53558 * 116.48565 * 92.15986 * 20 19 18 23 23 C 1.46213 * 119.93939 * 3.99044 * 16 14 13 24 24 H 1.09004 * 115.41218 * 336.68575 * 23 16 14 25 25 C 1.47439 * 106.46403 * 0.39573 * 13 12 11 26 26 C 1.39273 * 134.00642 * 179.75466 * 25 13 12 27 27 C 1.37753 * 119.67318 * 180.02562 * 26 25 13 28 28 C 1.38748 * 120.29960 * 0.02562 * 27 26 25 29 29 C 1.37766 * 120.63588 * 0.02562 * 28 27 26 30 30 C 1.37967 * 124.78484 * 85.00174 * 11 10 9 31 31 H 0.97004 * 119.99928 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.46734 * 299.99800 * 9 7 2 33 33 H 1.09004 * 109.46916 * 59.99535 * 9 7 2 34 34 H 1.08993 * 109.47621 * 299.99669 * 10 9 7 35 35 H 1.09004 * 109.47392 * 60.00095 * 10 9 7 36 36 H 1.07999 * 125.11142 * 359.97438 * 12 11 10 37 37 H 1.09002 * 109.13076 * 263.27776 * 17 16 14 38 38 H 1.09005 * 109.12815 * 22.37445 * 17 16 14 39 39 H 1.08998 * 108.70649 * 176.82330 * 18 17 16 40 40 H 1.09004 * 108.70705 * 294.81970 * 18 17 16 41 41 H 1.00899 * 110.99716 * 183.59970 * 19 18 17 42 42 H 1.08999 * 117.50857 * 357.32030 * 22 20 19 43 43 H 1.09002 * 117.50984 * 142.38729 * 22 20 19 44 44 H 1.08007 * 120.16445 * 359.97438 * 26 25 13 45 45 H 1.08005 * 119.85283 * 180.02562 * 27 26 25 46 46 H 1.08000 * 119.68617 * 180.02562 * 28 27 26 47 47 H 1.08003 * 120.03400 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0068 10 6 4.0216 -2.6363 -0.0055 11 7 5.4867 -2.6363 -0.0122 12 6 6.2545 -2.7419 -1.1233 13 6 7.5733 -2.7050 -0.7778 14 6 8.7234 -2.7875 -1.6880 15 8 9.6987 -2.0845 -1.5012 16 7 8.6983 -3.6419 -2.7302 17 6 9.8763 -3.7909 -3.5787 18 6 10.0569 -5.2317 -4.0197 19 7 8.8942 -5.7762 -4.6961 20 6 7.6253 -5.5710 -4.0025 21 1 7.0545 -6.4755 -3.7920 22 6 6.8348 -4.3097 -4.3798 23 6 7.4928 -4.4224 -3.0050 24 1 6.8293 -4.5737 -2.1535 25 6 7.6171 -2.5725 0.6900 26 6 8.6472 -2.4882 1.6236 27 6 8.3460 -2.3679 2.9624 28 6 7.0240 -2.3311 3.3819 29 6 5.9953 -2.4147 2.4694 30 6 6.2790 -2.5346 1.1128 31 1 -0.4850 0.8401 0.0004 32 1 3.8712 -0.6818 -0.8994 33 1 3.8786 -0.6782 0.8806 34 1 3.6621 -3.1481 0.8872 35 1 3.6546 -3.1524 -0.8927 36 1 5.8788 -2.8387 -2.1311 37 1 9.7641 -3.1591 -4.4598 38 1 10.7590 -3.4740 -3.0232 39 1 10.9113 -5.2864 -4.6942 40 1 10.2683 -5.8422 -3.1417 41 1 9.0301 -6.7503 -4.9211 42 1 7.2867 -3.6294 -5.1016 43 1 5.7488 -4.3913 -4.4262 44 1 9.6771 -2.5178 1.2995 45 1 9.1426 -2.3018 3.6888 46 1 6.7992 -2.2362 4.4340 47 1 4.9697 -2.3855 2.8068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:04 Heat of formation + Delta-G solvation = 65.060244 kcal Electronic energy + Delta-G solvation = -29339.678634 eV Core-core repulsion = 25488.732086 eV Total energy + Delta-G solvation = -3850.946548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.48220 -40.25670 -38.12904 -37.00819 -34.42671 -33.92250 -33.82929 -32.40981 -30.71745 -29.33436 -29.13172 -27.90729 -25.40255 -23.95565 -23.22407 -22.56905 -21.87033 -21.60492 -20.53968 -19.94419 -18.61498 -17.83078 -17.18059 -16.69107 -16.45209 -16.05460 -15.69357 -15.42990 -15.24175 -14.89018 -14.59999 -14.27415 -14.11011 -13.98418 -13.68624 -13.48366 -13.14145 -12.95756 -12.79994 -12.63585 -12.17484 -12.12695 -12.01299 -11.95050 -11.54212 -11.35987 -11.19319 -11.14650 -11.05272 -10.77502 -10.44379 -10.30019 -9.99955 -9.90365 -9.50289 -9.37429 -8.73192 -8.61939 -8.59522 -8.05770 -7.45050 -6.24236 -4.26407 1.18979 1.75206 2.21972 2.67723 3.00826 3.19833 3.20530 3.29172 3.34232 3.46558 3.80193 4.10669 4.29525 4.36361 4.48241 4.60400 4.69376 4.80038 4.86075 4.86932 4.96597 5.08221 5.11434 5.21485 5.30932 5.34160 5.38896 5.53852 5.60179 5.64676 5.68294 5.73025 5.82063 5.83464 5.87812 5.90037 6.14211 6.20664 6.35997 6.60561 6.69327 6.75465 6.81162 6.84095 6.89571 6.92272 7.04974 7.30515 7.36171 7.39918 7.57342 8.22375 8.25449 8.75760 9.36496 10.87959 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010343 B = 0.003653 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.539157 B = 7662.118087 C = 9331.198619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.076 3.924 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.076 0.924 9 C -0.025 4.025 10 C 0.111 3.889 11 N -0.456 5.456 12 C 0.115 3.885 13 C -0.250 4.250 14 C 0.604 3.396 15 O -0.539 6.539 16 N -0.583 5.583 17 C 0.115 3.885 18 C 0.060 3.940 19 N -0.673 5.673 20 C 0.023 3.977 21 H 0.113 0.887 22 C -0.183 4.183 23 C 0.060 3.940 24 H 0.139 0.861 25 C -0.065 4.065 26 C -0.076 4.076 27 C -0.143 4.143 28 C -0.109 4.109 29 C -0.113 4.113 30 C 0.093 3.907 31 H 0.267 0.733 32 H 0.019 0.981 33 H 0.025 0.975 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.176 0.824 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.032 0.968 41 H 0.357 0.643 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.124 0.876 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.488 -13.041 -4.439 22.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.568 4.568 8 H 0.094 0.906 9 C -0.063 4.063 10 C -0.008 4.008 11 N -0.133 5.133 12 C -0.019 4.019 13 C -0.261 4.261 14 C 0.395 3.605 15 O -0.416 6.416 16 N -0.315 5.315 17 C -0.008 4.008 18 C -0.069 4.069 19 N -0.305 5.305 20 C -0.089 4.089 21 H 0.131 0.869 22 C -0.223 4.223 23 C -0.047 4.047 24 H 0.156 0.844 25 C -0.069 4.069 26 C -0.094 4.094 27 C -0.162 4.162 28 C -0.128 4.128 29 C -0.133 4.133 30 C -0.012 4.012 31 H 0.076 0.924 32 H 0.037 0.963 33 H 0.043 0.957 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.193 0.807 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.050 0.950 41 H 0.176 0.824 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.142 0.858 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 17.455 -11.991 -4.656 21.682 hybrid contribution 0.196 0.367 0.405 0.581 sum 17.650 -11.624 -4.251 21.557 Atomic orbital electron populations 1.69887 1.06258 1.27315 1.49743 1.24930 0.94707 0.99137 0.93951 0.86830 0.80467 0.83579 0.78843 1.20055 1.21013 1.18931 1.20828 0.88268 0.94896 1.52830 0.90582 1.19938 0.97845 0.90828 0.97648 1.22231 0.72897 1.01833 1.03833 1.44394 1.07742 1.57024 1.04154 1.22206 0.89560 0.98077 0.92063 1.19628 0.91817 1.22032 0.92584 1.17293 0.86215 0.78286 0.78686 1.90764 1.35389 1.42367 1.73113 1.46874 1.12788 1.41993 1.29802 1.21105 0.89095 0.95936 0.94665 1.21407 0.92862 0.95180 0.97440 1.57834 1.00842 1.23338 1.48459 1.22495 0.93136 0.93655 0.99597 0.86919 1.23833 0.99723 1.00739 0.97982 1.22195 0.90510 0.97056 0.94939 0.84401 1.18654 0.92329 1.04768 0.91145 1.20441 0.98009 0.99112 0.91875 1.20858 0.96335 1.03803 0.95199 1.20766 0.92152 1.01029 0.98863 1.20178 1.00093 1.03758 0.89299 1.18259 0.89410 1.04707 0.88813 0.92358 0.96312 0.95690 0.89517 0.89298 0.80734 0.91522 0.88604 0.89296 0.95009 0.82361 0.87940 0.87351 0.86148 0.86216 0.85844 0.85649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.19 27.47 -169.99 -4.67 16.53 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.53 -13.90 9.66 -34.44 -0.33 -14.24 16 8 H 0.08 2.10 7.99 -52.49 -0.42 1.68 16 9 C -0.02 -0.54 4.37 -27.88 -0.12 -0.66 16 10 C 0.11 1.93 5.90 -4.04 -0.02 1.90 16 11 N -0.46 -7.49 2.74 -114.22 -0.31 -7.80 16 12 C 0.12 1.71 8.86 -16.62 -0.15 1.56 16 13 C -0.25 -4.01 5.55 -103.31 -0.57 -4.59 16 14 C 0.60 9.59 7.58 -12.75 -0.10 9.49 16 15 O -0.54 -10.11 16.59 5.21 0.09 -10.02 16 16 N -0.58 -7.28 3.15 -169.22 -0.53 -7.82 16 17 C 0.11 1.22 6.22 -4.97 -0.03 1.19 16 18 C 0.06 0.48 6.58 -5.42 -0.04 0.45 16 19 N -0.67 -5.20 6.68 -109.17 -0.73 -5.93 16 20 C 0.02 0.19 6.83 -68.03 -0.46 -0.28 16 21 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 22 C -0.18 -1.63 10.24 -26.53 -0.27 -1.90 16 23 C 0.06 0.61 4.66 -68.32 -0.32 0.29 16 24 H 0.14 1.41 5.52 -51.93 -0.29 1.13 16 25 C -0.06 -1.10 6.36 -104.96 -0.67 -1.76 16 26 C -0.08 -1.17 10.09 -39.37 -0.40 -1.57 16 27 C -0.14 -1.93 10.03 -39.57 -0.40 -2.33 16 28 C -0.11 -1.48 10.01 -39.57 -0.40 -1.88 16 29 C -0.11 -1.77 9.97 -39.43 -0.39 -2.17 16 30 C 0.09 1.59 6.79 -83.97 -0.57 1.02 16 31 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.02 0.42 7.58 -51.93 -0.39 0.03 16 33 H 0.02 0.58 7.19 -51.93 -0.37 0.21 16 34 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 36 H 0.18 2.11 6.79 -52.49 -0.36 1.76 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.10 1.08 7.22 -51.93 -0.38 0.71 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.36 2.00 8.88 -39.29 -0.35 1.65 16 42 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 45 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 46 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 47 H 0.13 1.89 8.06 -52.48 -0.42 1.46 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -32.69 383.33 -11.74 -44.43 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.79 Total: 3.79 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -5.34 Total: -13.48 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.80 Total: -47.02 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.69 -11.74 -44.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.486 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds