Wall clock time and date at job start Sat Apr 11 2020 05:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99790 * 2 1 4 4 H 1.48494 * 109.47509 * 270.00442 * 3 2 1 5 5 H 1.48503 * 109.46666 * 30.00296 * 3 2 1 6 6 H 1.48495 * 109.47061 * 149.99951 * 3 2 1 7 7 C 1.37868 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00025 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00202 * 179.72465 * 7 2 1 10 10 C 1.52995 * 109.47110 * 179.97438 * 9 7 2 11 11 N 1.46508 * 109.46946 * 179.97438 * 10 9 7 12 12 C 1.35471 * 124.78827 * 264.69452 * 11 10 9 13 13 C 1.36372 * 109.76676 * 179.85434 * 12 11 10 14 14 C 1.46910 * 126.76739 * 180.13292 * 13 12 11 15 15 O 1.21671 * 120.00052 * 139.86567 * 14 13 12 16 16 N 1.34785 * 120.00317 * 319.86769 * 14 13 12 17 17 C 1.45945 * 119.94764 * 184.26623 * 16 14 13 18 18 C 1.51755 * 111.21915 * 142.82638 * 17 16 14 19 19 N 1.45107 * 113.34761 * 55.81848 * 18 17 16 20 20 C 1.46059 * 114.96596 * 310.62985 * 19 18 17 21 21 H 1.09006 * 115.47195 * 235.86299 * 20 19 18 22 22 C 1.53558 * 116.48565 * 92.15986 * 20 19 18 23 23 C 1.46213 * 119.93939 * 3.99044 * 16 14 13 24 24 H 1.09004 * 115.41218 * 336.68575 * 23 16 14 25 25 C 1.47439 * 106.46403 * 0.39573 * 13 12 11 26 26 C 1.39273 * 134.00642 * 179.75466 * 25 13 12 27 27 C 1.37753 * 119.67318 * 180.02562 * 26 25 13 28 28 C 1.38748 * 120.29960 * 0.02562 * 27 26 25 29 29 C 1.37766 * 120.63588 * 0.02562 * 28 27 26 30 30 C 1.37967 * 124.78484 * 85.00174 * 11 10 9 31 31 H 0.97004 * 119.99928 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.46734 * 299.99800 * 9 7 2 33 33 H 1.09004 * 109.46916 * 59.99535 * 9 7 2 34 34 H 1.08993 * 109.47621 * 299.99669 * 10 9 7 35 35 H 1.09004 * 109.47392 * 60.00095 * 10 9 7 36 36 H 1.07999 * 125.11142 * 359.97438 * 12 11 10 37 37 H 1.09002 * 109.13076 * 263.27776 * 17 16 14 38 38 H 1.09005 * 109.12815 * 22.37445 * 17 16 14 39 39 H 1.08998 * 108.70649 * 176.82330 * 18 17 16 40 40 H 1.09004 * 108.70705 * 294.81970 * 18 17 16 41 41 H 1.00899 * 110.99716 * 183.59970 * 19 18 17 42 42 H 1.08999 * 117.50857 * 357.32030 * 22 20 19 43 43 H 1.09002 * 117.50984 * 142.38729 * 22 20 19 44 44 H 1.08007 * 120.16445 * 359.97438 * 26 25 13 45 45 H 1.08005 * 119.85283 * 180.02562 * 27 26 25 46 46 H 1.08000 * 119.68617 * 180.02562 * 28 27 26 47 47 H 1.08003 * 120.03400 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0068 10 6 4.0216 -2.6363 -0.0055 11 7 5.4867 -2.6363 -0.0122 12 6 6.2545 -2.7419 -1.1233 13 6 7.5733 -2.7050 -0.7778 14 6 8.7234 -2.7875 -1.6880 15 8 9.6987 -2.0845 -1.5012 16 7 8.6983 -3.6419 -2.7302 17 6 9.8763 -3.7909 -3.5787 18 6 10.0569 -5.2317 -4.0197 19 7 8.8942 -5.7762 -4.6961 20 6 7.6253 -5.5710 -4.0025 21 1 7.0545 -6.4755 -3.7920 22 6 6.8348 -4.3097 -4.3798 23 6 7.4928 -4.4224 -3.0050 24 1 6.8293 -4.5737 -2.1535 25 6 7.6171 -2.5725 0.6900 26 6 8.6472 -2.4882 1.6236 27 6 8.3460 -2.3679 2.9624 28 6 7.0240 -2.3311 3.3819 29 6 5.9953 -2.4147 2.4694 30 6 6.2790 -2.5346 1.1128 31 1 -0.4850 0.8401 0.0004 32 1 3.8712 -0.6818 -0.8994 33 1 3.8786 -0.6782 0.8806 34 1 3.6621 -3.1481 0.8872 35 1 3.6546 -3.1524 -0.8927 36 1 5.8788 -2.8387 -2.1311 37 1 9.7641 -3.1591 -4.4598 38 1 10.7590 -3.4740 -3.0232 39 1 10.9113 -5.2864 -4.6942 40 1 10.2683 -5.8422 -3.1417 41 1 9.0301 -6.7503 -4.9211 42 1 7.2867 -3.6294 -5.1016 43 1 5.7488 -4.3913 -4.4262 44 1 9.6771 -2.5178 1.2995 45 1 9.1426 -2.3018 3.6888 46 1 6.7992 -2.2362 4.4340 47 1 4.9697 -2.3855 2.8068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:03 Heat of formation + Delta-G solvation = 45.368887 kcal Electronic energy + Delta-G solvation = -29340.532515 eV Core-core repulsion = 25488.732086 eV Total energy + Delta-G solvation = -3851.800429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.64955 -41.20513 -39.16144 -38.18143 -35.90145 -34.95597 -34.74226 -34.05912 -32.14535 -30.53393 -30.34105 -28.91581 -26.93707 -24.78828 -24.31767 -23.80681 -23.10093 -22.69076 -21.76693 -21.03088 -19.52399 -19.13765 -18.74947 -17.76409 -17.46180 -17.11454 -16.72915 -16.59128 -16.45557 -16.25335 -15.66706 -15.56187 -15.26654 -15.17833 -14.85892 -14.67775 -14.62403 -14.50113 -13.83414 -13.69862 -13.61160 -13.08241 -13.00892 -12.98289 -12.85619 -12.72496 -12.56422 -12.12375 -12.04106 -11.92166 -11.88065 -11.84679 -11.69314 -11.52381 -11.11575 -10.84486 -10.60627 -9.55756 -9.28370 -9.18383 -8.65281 -8.36682 -6.41230 0.02737 0.59232 1.02857 1.28497 1.33151 1.41914 1.67588 1.79051 2.09941 2.27748 2.75400 2.93623 2.99222 3.12637 3.49940 3.65714 3.66897 3.68492 3.85083 3.95169 3.97584 4.10636 4.19366 4.25125 4.26947 4.31631 4.38590 4.46348 4.57976 4.62026 4.65165 4.71088 4.78248 4.79285 4.85628 4.96644 5.06184 5.12875 5.14140 5.18139 5.44147 5.48683 5.49982 5.61035 5.66087 5.79653 6.03620 6.12085 6.18933 6.21632 6.26394 6.48388 6.66503 7.07911 7.24552 8.78626 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010343 B = 0.003653 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.539157 B = 7662.118087 C = 9331.198619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.022 3.978 3 Si 0.933 3.067 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.526 4.526 8 H 0.054 0.946 9 C -0.019 4.019 10 C 0.125 3.875 11 N -0.461 5.461 12 C 0.125 3.875 13 C -0.263 4.263 14 C 0.599 3.401 15 O -0.581 6.581 16 N -0.576 5.576 17 C 0.110 3.890 18 C 0.069 3.931 19 N -0.677 5.677 20 C 0.037 3.963 21 H 0.137 0.863 22 C -0.178 4.178 23 C 0.036 3.964 24 H 0.138 0.862 25 C -0.088 4.088 26 C -0.093 4.093 27 C -0.134 4.134 28 C -0.103 4.103 29 C -0.131 4.131 30 C 0.071 3.929 31 H 0.268 0.732 32 H 0.017 0.983 33 H 0.013 0.987 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.200 0.800 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.030 0.970 41 H 0.372 0.628 42 H 0.089 0.911 43 H 0.125 0.875 44 H 0.118 0.882 45 H 0.152 0.848 46 H 0.155 0.845 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.562 -14.129 -4.744 23.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.564 4.564 8 H 0.072 0.928 9 C -0.057 4.057 10 C 0.005 3.995 11 N -0.139 5.139 12 C -0.009 4.009 13 C -0.274 4.274 14 C 0.390 3.610 15 O -0.462 6.462 16 N -0.306 5.306 17 C -0.013 4.013 18 C -0.061 4.061 19 N -0.310 5.310 20 C -0.075 4.075 21 H 0.155 0.845 22 C -0.218 4.218 23 C -0.070 4.070 24 H 0.155 0.845 25 C -0.092 4.092 26 C -0.112 4.112 27 C -0.153 4.153 28 C -0.122 4.122 29 C -0.151 4.151 30 C -0.033 4.033 31 H 0.077 0.923 32 H 0.035 0.965 33 H 0.032 0.968 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.217 0.783 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.129 0.871 40 H 0.048 0.952 41 H 0.194 0.806 42 H 0.107 0.893 43 H 0.144 0.856 44 H 0.136 0.864 45 H 0.169 0.831 46 H 0.173 0.827 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 18.540 -13.131 -4.993 23.261 hybrid contribution -0.097 0.627 0.512 0.816 sum 18.443 -12.503 -4.481 22.728 Atomic orbital electron populations 1.70004 1.07795 1.28190 1.51858 1.25702 0.95344 1.02509 0.94158 0.85914 0.79242 0.79934 0.79084 1.19355 1.20714 1.18597 1.21140 0.90479 0.93844 1.50966 0.92802 1.19795 0.95070 0.94015 0.96816 1.21947 0.73599 0.98790 1.05170 1.44276 1.07174 1.57899 1.04578 1.22536 0.88985 0.96812 0.92572 1.19767 0.92440 1.22631 0.92585 1.17370 0.85672 0.78502 0.79412 1.90726 1.36682 1.44322 1.74457 1.46900 1.14060 1.40909 1.28755 1.21239 0.88073 0.97959 0.94006 1.21346 0.93738 0.93040 0.97928 1.57820 1.00504 1.24557 1.48147 1.22670 0.93412 0.93910 0.97474 0.84516 1.23856 1.00712 1.01031 0.96214 1.22368 0.90174 0.98754 0.95733 0.84478 1.18980 0.92826 1.05450 0.91938 1.20622 0.97731 1.00029 0.92810 1.21231 0.97315 1.01790 0.94923 1.21159 0.91656 0.99265 1.00112 1.20419 1.00845 1.04538 0.89275 1.18539 0.89595 1.05675 0.89487 0.92262 0.96487 0.96839 0.89097 0.87213 0.78287 0.91739 0.89780 0.87085 0.95179 0.80617 0.89282 0.85644 0.86412 0.83064 0.82734 0.85558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.73 13.96 21.44 0.30 -55.43 16 2 C 0.02 1.20 5.47 84.65 0.46 1.66 16 3 Si 0.93 43.59 27.47 68.60 1.88 45.48 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.26 -11.97 6.54 99.48 0.65 -11.32 16 7 C -0.53 -27.60 9.66 25.60 0.25 -27.35 16 8 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 9 C -0.02 -0.81 4.37 29.85 0.13 -0.68 16 10 C 0.12 4.17 5.90 86.38 0.51 4.68 16 11 N -0.46 -14.74 2.74 -515.29 -1.41 -16.16 16 12 C 0.12 3.58 8.86 83.70 0.74 4.32 16 13 C -0.26 -8.49 5.55 -19.02 -0.11 -8.59 16 14 C 0.60 19.33 7.58 86.51 0.66 19.99 16 15 O -0.58 -22.58 16.59 -4.26 -0.07 -22.65 16 16 N -0.58 -14.22 3.15 -807.51 -2.54 -16.77 16 17 C 0.11 2.30 6.22 86.07 0.54 2.83 16 18 C 0.07 0.98 6.58 86.23 0.57 1.54 16 19 N -0.68 -8.69 6.68 -499.32 -3.34 -12.03 16 20 C 0.04 0.51 6.83 45.16 0.31 0.82 16 21 H 0.14 1.27 8.14 -2.38 -0.02 1.25 16 22 C -0.18 -2.81 10.24 30.73 0.31 -2.50 16 23 C 0.04 0.67 4.66 44.89 0.21 0.88 16 24 H 0.14 2.61 5.52 -2.38 -0.01 2.60 16 25 C -0.09 -2.98 6.36 -20.08 -0.13 -3.10 16 26 C -0.09 -2.86 10.09 22.40 0.23 -2.64 16 27 C -0.13 -3.37 10.03 22.28 0.22 -3.15 16 28 C -0.10 -2.59 10.01 22.28 0.22 -2.37 16 29 C -0.13 -3.96 9.97 22.37 0.22 -3.74 16 30 C 0.07 2.40 6.79 38.91 0.26 2.66 16 31 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 32 H 0.02 0.74 7.58 -2.38 -0.02 0.72 16 33 H 0.01 0.61 7.19 -2.39 -0.02 0.59 16 34 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 35 H 0.11 3.20 8.11 -2.39 -0.02 3.18 16 36 H 0.20 4.49 6.79 -2.91 -0.02 4.47 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.08 1.96 7.22 -2.38 -0.02 1.94 16 39 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.03 0.45 8.14 -2.38 -0.02 0.43 16 41 H 0.37 2.99 8.88 -89.69 -0.80 2.19 16 42 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.12 3.58 8.06 -2.91 -0.02 3.56 16 45 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 46 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 47 H 0.13 3.71 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -71.88 383.33 0.57 -71.31 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.14 Total: 20.98 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 5.61 Total: -14.72 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -6.99 Total: -100.38 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.07 Total: -22.65 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.48 kcal Total: -71.88 0.57 -71.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.677 kcal (2) G-P(sol) polarization free energy of solvation -71.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds