Wall clock time and date at job start Sat Apr 11 2020 05:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31350 * 1 3 3 Si 1.86801 * 119.99967 * 2 1 4 4 H 1.48502 * 109.47006 * 274.89887 * 3 2 1 5 5 H 1.48502 * 109.47383 * 34.89638 * 3 2 1 6 6 H 1.48497 * 109.47148 * 154.90121 * 3 2 1 7 7 C 1.39016 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99684 * 3.89005 * 7 2 1 9 9 N 1.36888 * 120.00143 * 183.89162 * 7 2 1 10 10 C 1.38208 * 125.62316 * 126.24611 * 9 7 2 11 11 C 1.46890 * 125.43352 * 0.04198 * 10 9 7 12 12 O 1.21661 * 120.00177 * 185.21854 * 11 10 9 13 13 N 1.34779 * 120.00134 * 5.21181 * 11 10 9 14 14 C 1.46495 * 120.00075 * 184.72286 * 13 11 10 15 15 H 1.09000 * 112.94898 * 332.22036 * 14 13 11 16 16 C 1.53950 * 113.66556 * 103.62625 * 14 13 11 17 17 C 1.53944 * 87.29816 * 139.20371 * 16 14 13 18 18 H 1.08996 * 113.66628 * 89.73878 * 17 16 14 19 19 N 1.46901 * 113.66393 * 220.80068 * 17 16 14 20 20 C 1.52909 * 86.78308 * 335.26767 * 17 16 14 21 21 C 1.52910 * 121.13592 * 150.61264 * 20 17 16 22 22 C 1.53955 * 86.78078 * 100.82414 * 21 20 17 23 23 C 1.53074 * 121.07095 * 259.15581 * 20 17 16 24 24 C 1.36122 * 109.12987 * 179.76964 * 10 9 7 25 25 C 1.41699 * 107.74784 * 0.23184 * 24 10 9 26 26 C 1.40018 * 133.35474 * 180.02562 * 25 24 10 27 27 C 1.36578 * 119.83411 * 180.02562 * 26 25 24 28 28 C 1.38851 * 120.59927 * 359.92383 * 27 26 25 29 29 C 1.37847 * 120.63328 * 0.06170 * 28 27 26 30 30 C 1.37836 * 125.61769 * 306.41930 * 9 7 2 31 31 H 0.97000 * 120.00077 * 5.00229 * 1 2 3 32 32 H 0.97000 * 120.00065 * 4.72578 * 13 11 10 33 33 H 1.09005 * 113.57778 * 24.60165 * 16 14 13 34 34 H 1.08998 * 113.64930 * 253.82178 * 16 14 13 35 35 H 1.00902 * 110.99560 * 277.18333 * 19 17 16 36 36 H 1.00895 * 111.00249 * 41.14055 * 19 17 16 37 37 H 1.09002 * 113.66817 * 346.35285 * 21 20 17 38 38 H 1.09001 * 113.66470 * 215.29913 * 21 20 17 39 39 H 1.09007 * 113.57574 * 139.33773 * 22 21 20 40 40 H 1.08996 * 113.57853 * 270.05161 * 22 21 20 41 41 H 1.08997 * 113.66113 * 144.67707 * 23 20 17 42 42 H 1.08995 * 113.70753 * 13.57732 * 23 20 17 43 43 H 1.07996 * 126.12584 * 180.24489 * 24 10 9 44 44 H 1.08004 * 120.08178 * 359.96356 * 26 25 24 45 45 H 1.08004 * 119.69565 * 179.97438 * 27 26 25 46 46 H 1.07999 * 119.68110 * 180.02562 * 28 27 26 47 47 H 1.08004 * 120.08744 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.3914 2.1062 -1.3950 5 1 1.5005 2.6207 0.8010 6 1 3.5930 1.4125 0.5939 7 6 2.0086 -1.2039 0.0005 8 1 1.4705 -2.1381 -0.0625 9 7 3.3751 -1.2052 0.0810 10 6 4.1261 -1.9002 1.0100 11 6 3.5851 -2.7590 2.0719 12 8 4.3323 -3.2504 2.8967 13 7 2.2609 -3.0024 2.1325 14 6 1.7081 -3.7727 3.2493 15 1 2.4234 -4.4760 3.6757 16 6 0.9900 -2.9078 4.3011 17 6 -0.0816 -4.0109 4.3702 18 1 0.1305 -4.7811 5.1117 19 7 -1.4542 -3.4948 4.4571 20 6 0.3420 -4.3917 2.9512 21 6 0.2187 -5.8306 2.4486 22 6 -1.0627 -5.3764 1.7261 23 6 -0.4792 -3.9518 1.7367 24 6 5.4474 -1.6667 0.7803 25 6 5.5446 -0.7898 -0.3285 26 6 6.6258 -0.2135 -1.0064 27 6 6.3984 0.6146 -2.0684 28 6 5.1029 0.8905 -2.4849 29 6 4.0224 0.3349 -1.8337 30 6 4.2288 -0.5109 -0.7491 31 1 -0.4850 0.8368 -0.0732 32 1 1.6738 -2.6676 1.4367 33 1 0.6175 -1.9621 3.9072 34 1 1.5528 -2.7880 5.2268 35 1 -1.6914 -3.2566 5.4085 36 1 -1.5828 -2.7041 3.8436 37 1 0.0399 -6.5571 3.2412 38 1 1.0202 -6.1280 1.7724 39 1 -1.1711 -5.7958 0.7257 40 1 -1.9643 -5.4828 2.3292 41 1 0.1258 -3.7203 0.8601 42 1 -1.2148 -3.1795 1.9614 43 1 6.2735 -2.0766 1.3422 44 1 7.6369 -0.4226 -0.6896 45 1 7.2340 1.0582 -2.5894 46 1 4.9403 1.5471 -3.3268 47 1 3.0185 0.5559 -2.1649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:07 Heat of formation + Delta-G solvation = 75.719548 kcal Electronic energy + Delta-G solvation = -30422.140963 eV Core-core repulsion = 26571.656637 eV Total energy + Delta-G solvation = -3850.484325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.03594 -40.55974 -38.25029 -36.25533 -35.05671 -33.88872 -33.25028 -31.52343 -30.81351 -29.26877 -28.32889 -25.58923 -25.01046 -24.57551 -24.06876 -22.20719 -21.22041 -20.82588 -20.20696 -19.33431 -18.56760 -17.89875 -16.72497 -16.26129 -15.98725 -15.87156 -15.30389 -15.04343 -14.63952 -14.47760 -14.40525 -13.82593 -13.62321 -13.41294 -13.33165 -13.27289 -12.77737 -12.66539 -12.41791 -12.27006 -12.06390 -12.02103 -11.78631 -11.51256 -11.23666 -11.09350 -11.07783 -10.87034 -10.59954 -10.27154 -10.17425 -10.07241 -9.96537 -9.94900 -9.43626 -9.38728 -8.82295 -8.61380 -8.32624 -7.39645 -7.08492 -6.88214 -4.90056 1.50781 2.39277 2.76588 2.94928 3.07490 3.17941 3.75104 3.82562 4.06015 4.15041 4.43888 4.50759 4.57522 4.63752 4.70885 4.85956 5.02350 5.06673 5.12513 5.43177 5.52834 5.59866 5.60926 5.70087 5.76198 5.83164 5.86151 5.98992 6.04808 6.07855 6.09068 6.14286 6.14885 6.29487 6.34977 6.46704 6.53332 6.58954 6.65799 6.70056 6.73168 7.10040 7.13141 7.16788 7.17095 7.23643 7.48164 7.49574 7.53592 7.60495 7.99533 8.26702 8.52615 8.89835 8.95877 10.03543 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014711 B = 0.004270 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.842636 B = 6555.369372 C = 7463.937320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.089 3.911 3 Si 0.880 3.120 4 H -0.256 1.256 5 H -0.286 1.286 6 H -0.246 1.246 7 C -0.374 4.374 8 H 0.119 0.881 9 N -0.288 5.288 10 C 0.000 4.000 11 C 0.593 3.407 12 O -0.558 6.558 13 N -0.708 5.708 14 C 0.135 3.865 15 H 0.109 0.891 16 C -0.188 4.188 17 C 0.101 3.899 18 H 0.103 0.897 19 N -0.834 5.834 20 C -0.103 4.103 21 C -0.124 4.124 22 C -0.131 4.131 23 C -0.106 4.106 24 C -0.158 4.158 25 C -0.127 4.127 26 C -0.071 4.071 27 C -0.163 4.163 28 C -0.120 4.120 29 C -0.123 4.123 30 C 0.079 3.921 31 H 0.287 0.713 32 H 0.421 0.579 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.338 0.662 36 H 0.346 0.654 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.139 0.861 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 -3.518 2.915 4.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.125 4.125 3 Si 0.705 3.295 4 H -0.181 1.181 5 H -0.213 1.213 6 H -0.169 1.169 7 C -0.501 4.501 8 H 0.136 0.864 9 N 0.045 4.955 10 C -0.114 4.114 11 C 0.382 3.618 12 O -0.438 6.438 13 N -0.367 5.367 14 C 0.029 3.971 15 H 0.127 0.873 16 C -0.229 4.229 17 C -0.012 4.012 18 H 0.121 0.879 19 N -0.363 5.363 20 C -0.105 4.105 21 C -0.161 4.161 22 C -0.169 4.169 23 C -0.144 4.144 24 C -0.185 4.185 25 C -0.132 4.132 26 C -0.090 4.090 27 C -0.182 4.182 28 C -0.140 4.140 29 C -0.143 4.143 30 C -0.034 4.034 31 H 0.098 0.902 32 H 0.268 0.732 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.150 0.850 36 H 0.161 0.839 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.157 0.843 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.335 -4.513 3.313 5.756 hybrid contribution 0.405 2.010 -0.084 2.052 sum -0.930 -2.503 3.229 4.190 Atomic orbital electron populations 1.69575 1.06120 1.29991 1.40417 1.25495 0.95456 0.99486 0.92101 0.86801 0.81279 0.81495 0.79905 1.18076 1.21327 1.16948 1.19038 0.77456 0.96138 1.57424 0.86445 1.40245 1.04868 1.32224 1.18134 1.20393 0.91634 1.04444 0.94955 1.17244 0.82187 0.79217 0.83187 1.90713 1.58958 1.52501 1.41611 1.46653 1.08343 1.54454 1.27222 1.22027 0.93413 0.93807 0.87880 0.87303 1.24284 0.99380 0.99328 0.99952 1.22333 0.86606 0.96526 0.95738 0.87909 1.58646 1.23810 1.41054 1.12742 1.23084 0.94791 0.97114 0.95466 1.22704 0.98341 0.95210 0.99882 1.22746 0.97489 0.96565 1.00051 1.22462 0.98493 0.97227 0.96220 1.20522 0.94307 1.03525 1.00171 1.18049 0.92548 1.02954 0.99611 1.20218 0.96867 0.96721 0.95197 1.20376 0.96254 1.02257 0.99330 1.20625 0.92186 1.01097 1.00109 1.20232 0.99481 0.98729 0.95856 1.18526 0.89733 1.00281 0.94867 0.90231 0.73153 0.89464 0.91388 0.84964 0.83916 0.91616 0.90228 0.92135 0.89792 0.89777 0.90684 0.84299 0.86975 0.87100 0.86825 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.00 13.95 55.50 0.77 -19.23 16 2 C 0.09 2.14 5.49 -17.47 -0.10 2.04 16 3 Si 0.88 19.84 23.53 -169.99 -4.00 15.84 16 4 H -0.26 -5.46 6.06 56.52 0.34 -5.11 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.25 -5.99 6.24 56.52 0.35 -5.64 16 7 C -0.37 -8.95 8.29 -15.01 -0.12 -9.08 16 8 H 0.12 2.86 6.06 -52.49 -0.32 2.54 16 9 N -0.29 -6.81 2.41 -56.08 -0.14 -6.94 16 10 C 0.00 -0.01 6.77 -82.25 -0.56 -0.57 16 11 C 0.59 13.14 7.77 -12.76 -0.10 13.04 16 12 O -0.56 -13.01 16.48 5.22 0.09 -12.93 16 13 N -0.71 -13.89 5.19 -54.61 -0.28 -14.17 16 14 C 0.14 2.22 4.10 -67.48 -0.28 1.94 16 15 H 0.11 1.83 7.52 -51.93 -0.39 1.44 16 16 C -0.19 -2.76 7.60 -25.75 -0.20 -2.96 16 17 C 0.10 1.25 4.90 -67.27 -0.33 0.92 16 18 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 19 N -0.83 -9.44 9.28 -4.29 -0.04 -9.48 16 20 C -0.10 -1.44 1.07 -154.63 -0.16 -1.61 16 21 C -0.12 -1.60 7.84 -26.28 -0.21 -1.81 16 22 C -0.13 -1.70 8.08 -25.75 -0.21 -1.91 16 23 C -0.11 -1.60 6.84 -26.20 -0.18 -1.78 16 24 C -0.16 -3.44 10.55 -39.02 -0.41 -3.85 16 25 C -0.13 -2.73 6.16 -106.89 -0.66 -3.39 16 26 C -0.07 -1.30 10.06 -39.51 -0.40 -1.70 16 27 C -0.16 -2.77 9.97 -39.95 -0.40 -3.17 16 28 C -0.12 -2.18 10.02 -39.50 -0.40 -2.57 16 29 C -0.12 -2.61 6.87 -39.41 -0.27 -2.88 16 30 C 0.08 1.82 4.56 -83.83 -0.38 1.43 16 31 H 0.29 6.49 8.31 -40.82 -0.34 6.15 16 32 H 0.42 8.58 2.81 -40.82 -0.11 8.47 16 33 H 0.09 1.42 8.03 -51.93 -0.42 1.01 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.34 3.17 9.08 -39.29 -0.36 2.82 16 36 H 0.35 4.22 7.42 -39.29 -0.29 3.93 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 1.45 6.56 -51.93 -0.34 1.11 16 42 H 0.07 1.17 6.68 -51.93 -0.35 0.82 16 43 H 0.14 2.75 8.06 -52.49 -0.42 2.33 16 44 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 45 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 46 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 47 H 0.12 2.59 5.70 -52.48 -0.30 2.29 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -26.47 366.42 -9.77 -36.25 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: -6.35 Total: 23.04 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -5.35 Total: -17.91 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.32 Total: -49.82 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.00 Total: 15.84 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -26.47 -9.77 -36.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.966 kcal (2) G-P(sol) polarization free energy of solvation -26.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds