Wall clock time and date at job start Sat Apr 11 2020 05:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31355 * 1 3 3 Si 1.86804 * 119.99294 * 2 1 4 4 H 1.48506 * 109.46689 * 184.75305 * 3 2 1 5 5 H 1.48495 * 109.46987 * 304.74909 * 3 2 1 6 6 H 1.48495 * 109.47201 * 64.75411 * 3 2 1 7 7 C 1.39007 * 120.00483 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00232 * 182.86187 * 7 2 1 9 9 N 1.36897 * 120.00019 * 2.85331 * 7 2 1 10 10 C 1.38208 * 125.61772 * 133.29329 * 9 7 2 11 11 C 1.46895 * 125.43778 * 0.04202 * 10 9 7 12 12 O 1.21667 * 120.00041 * 173.76759 * 11 10 9 13 13 N 1.34778 * 119.99752 * 353.77538 * 11 10 9 14 14 C 1.46497 * 119.99943 * 184.82354 * 13 11 10 15 15 H 1.09003 * 112.94751 * 28.27324 * 14 13 11 16 16 C 1.53952 * 113.66000 * 256.87221 * 14 13 11 17 17 C 1.53949 * 87.29448 * 270.25581 * 16 14 13 18 18 H 1.09000 * 113.66822 * 220.79404 * 17 16 14 19 19 N 1.46901 * 113.74551 * 89.75332 * 17 16 14 20 20 C 1.52907 * 86.78413 * 335.26917 * 17 16 14 21 21 C 1.52907 * 121.13587 * 150.61460 * 20 17 16 22 22 C 1.53947 * 86.78346 * 100.82320 * 21 20 17 23 23 C 1.53071 * 121.06640 * 259.15788 * 20 17 16 24 24 C 1.36121 * 109.12694 * 179.78143 * 10 9 7 25 25 C 1.41701 * 107.74687 * 0.22786 * 24 10 9 26 26 C 1.40019 * 133.34723 * 180.02562 * 25 24 10 27 27 C 1.36585 * 119.82925 * 179.97438 * 26 25 24 28 28 C 1.38853 * 120.59936 * 359.97438 * 27 26 25 29 29 C 1.37847 * 120.63460 * 359.97438 * 28 27 26 30 30 C 1.37838 * 125.61996 * 313.47566 * 9 7 2 31 31 H 0.96993 * 120.00674 * 5.00994 * 1 2 3 32 32 H 0.97002 * 120.00429 * 4.81739 * 13 11 10 33 33 H 1.09001 * 113.57859 * 155.65549 * 16 14 13 34 34 H 1.09000 * 113.65483 * 24.87161 * 16 14 13 35 35 H 1.00903 * 111.00338 * 77.33852 * 19 17 16 36 36 H 1.00897 * 111.00210 * 201.29918 * 19 17 16 37 37 H 1.08996 * 113.66269 * 346.34923 * 21 20 17 38 38 H 1.09008 * 113.65932 * 215.29389 * 21 20 17 39 39 H 1.09000 * 113.58082 * 139.33361 * 22 21 20 40 40 H 1.08995 * 113.58129 * 270.05132 * 22 21 20 41 41 H 1.09002 * 113.66078 * 144.67384 * 23 20 17 42 42 H 1.09000 * 113.71207 * 13.57154 * 23 20 17 43 43 H 1.08002 * 126.12602 * 180.24973 * 24 10 9 44 44 H 1.08000 * 120.08932 * 359.97438 * 26 25 24 45 45 H 1.07996 * 119.69940 * 179.97438 * 27 26 25 46 46 H 1.08003 * 119.68427 * 180.02562 * 28 27 26 47 47 H 1.07999 * 120.09501 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6179 0.0000 4 1 3.7033 1.3490 -0.1160 5 1 1.8037 2.4455 -1.1503 6 1 1.9777 2.3451 1.2663 7 6 2.0087 -1.2038 -0.0005 8 1 3.0877 -1.2043 0.0462 9 7 1.3256 -2.3886 -0.0601 10 6 1.6260 -3.4500 -0.8928 11 6 2.7327 -3.4885 -1.8580 12 8 2.9776 -4.5158 -2.4621 13 7 3.4770 -2.3859 -2.0741 14 6 4.5116 -2.3922 -3.1114 15 1 4.2900 -3.0789 -3.9284 16 6 5.9411 -2.5320 -2.5573 17 6 5.9816 -0.9951 -2.4762 18 1 6.9344 -0.5656 -2.7858 19 7 5.5018 -0.4575 -1.1961 20 6 4.9214 -0.9949 -3.5780 21 6 3.8962 0.1341 -3.6884 22 6 4.7756 0.7054 -4.8155 23 6 5.2984 -0.7256 -5.0369 24 6 0.7362 -4.4561 -0.6718 25 6 -0.1658 -4.0223 0.3312 26 6 -1.2688 -4.6183 0.9548 27 6 -1.9599 -3.9329 1.9130 28 6 -1.5787 -2.6481 2.2764 29 6 -0.4957 -2.0409 1.6776 30 6 0.2227 -2.7184 0.6981 31 1 -0.4851 0.8367 -0.0733 32 1 3.3277 -1.5880 -1.5430 33 1 6.6478 -2.9495 -3.2745 34 1 5.9872 -3.0213 -1.5844 35 1 6.2021 -0.5574 -0.4766 36 1 5.2170 0.5057 -1.2924 37 1 3.8493 0.7705 -2.8048 38 1 2.9142 -0.1982 -4.0255 39 1 4.2052 1.0965 -5.6580 40 1 5.5392 1.3990 -4.4636 41 1 4.7113 -1.2999 -5.7536 42 1 6.3702 -0.7750 -5.2290 43 1 0.7208 -5.4136 -1.1712 44 1 -1.5724 -5.6173 0.6789 45 1 -2.8105 -4.3944 2.3923 46 1 -2.1355 -2.1198 3.0362 47 1 -0.2066 -1.0414 1.9672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:17 Heat of formation + Delta-G solvation = 57.175558 kcal Electronic energy + Delta-G solvation = -30715.070914 eV Core-core repulsion = 26863.782461 eV Total energy + Delta-G solvation = -3851.288453 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.30819 -41.72889 -39.69116 -37.54902 -36.45485 -35.38368 -34.33531 -32.44673 -32.07297 -30.57074 -29.63176 -26.77056 -26.71817 -25.74001 -25.32558 -23.76994 -22.67101 -21.95888 -21.35226 -20.91965 -19.91319 -18.64948 -18.17201 -17.34223 -17.12611 -17.01970 -16.64829 -16.41990 -16.01931 -15.95231 -15.86740 -15.54889 -14.95766 -14.81756 -14.67577 -14.53158 -14.17905 -13.88213 -13.55983 -13.38665 -13.31792 -13.15375 -12.92627 -12.80649 -12.70206 -12.56186 -12.29015 -12.14090 -11.93816 -11.81573 -11.41758 -11.35784 -11.23046 -11.02932 -10.93847 -10.84287 -10.33282 -9.81556 -9.47023 -8.88890 -8.55424 -8.26996 -6.45966 0.16419 1.14554 1.38702 1.40299 1.46714 1.56921 2.13659 2.33280 2.54400 2.87210 2.92086 3.21386 3.39676 3.54588 3.58118 3.78674 3.87298 3.96225 4.07745 4.15442 4.28960 4.45984 4.47980 4.50763 4.58171 4.75563 4.77008 4.78420 4.84633 4.88384 4.92435 5.02084 5.04370 5.06078 5.08581 5.11587 5.19201 5.26511 5.39516 5.41322 5.49294 5.56035 5.75152 5.84114 5.95437 6.01789 6.25120 6.31564 6.33790 6.59844 6.63140 6.79695 7.01059 7.43075 7.55030 8.44875 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013213 B = 0.004831 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.682495 B = 5794.649108 C = 7188.964860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.019 3.981 3 Si 0.984 3.016 4 H -0.215 1.215 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.381 4.381 8 H 0.126 0.874 9 N -0.273 5.273 10 C -0.045 4.045 11 C 0.583 3.417 12 O -0.591 6.591 13 N -0.682 5.682 14 C 0.120 3.880 15 H 0.071 0.929 16 C -0.140 4.140 17 C 0.104 3.896 18 H 0.076 0.924 19 N -0.846 5.846 20 C -0.105 4.105 21 C -0.137 4.137 22 C -0.126 4.126 23 C -0.098 4.098 24 C -0.185 4.185 25 C -0.157 4.157 26 C -0.097 4.097 27 C -0.152 4.152 28 C -0.144 4.144 29 C -0.071 4.071 30 C 0.075 3.925 31 H 0.281 0.719 32 H 0.427 0.573 33 H 0.111 0.889 34 H 0.056 0.944 35 H 0.355 0.645 36 H 0.348 0.652 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.137 0.863 44 H 0.131 0.869 45 H 0.145 0.855 46 H 0.135 0.865 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.054 5.557 -4.004 12.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.137 1.137 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.508 4.508 8 H 0.143 0.857 9 N 0.063 4.937 10 C -0.159 4.159 11 C 0.372 3.628 12 O -0.474 6.474 13 N -0.339 5.339 14 C 0.014 3.986 15 H 0.089 0.911 16 C -0.179 4.179 17 C -0.007 4.007 18 H 0.093 0.907 19 N -0.381 5.381 20 C -0.106 4.106 21 C -0.175 4.175 22 C -0.163 4.163 23 C -0.136 4.136 24 C -0.213 4.213 25 C -0.161 4.161 26 C -0.116 4.116 27 C -0.170 4.170 28 C -0.165 4.165 29 C -0.091 4.091 30 C -0.039 4.039 31 H 0.091 0.909 32 H 0.275 0.725 33 H 0.130 0.870 34 H 0.074 0.926 35 H 0.170 0.830 36 H 0.164 0.836 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.155 0.845 44 H 0.149 0.851 45 H 0.162 0.838 46 H 0.153 0.847 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.749 4.829 -4.435 11.749 hybrid contribution 0.334 1.463 0.188 1.513 sum 10.083 6.292 -4.246 12.621 Atomic orbital electron populations 1.70099 1.07977 1.29975 1.40676 1.26659 0.96275 1.03460 0.92620 0.85047 0.81390 0.75306 0.77824 1.13709 1.20195 1.20694 1.20173 0.93078 0.81382 1.56164 0.85717 1.40215 1.20337 1.10547 1.22627 1.20540 1.02204 0.93086 1.00120 1.17351 0.80746 0.83722 0.80970 1.90647 1.71848 1.32429 1.52433 1.46252 1.34166 1.15964 1.37563 1.21772 0.88281 0.98104 0.90399 0.91090 1.23482 0.96355 0.96481 1.01588 1.21998 0.95222 0.94715 0.88758 0.90663 1.58377 1.46764 1.25896 1.07042 1.23050 0.97331 0.93006 0.97173 1.22623 0.97326 0.97692 0.99825 1.22818 0.99038 0.96528 0.97917 1.22608 1.02586 0.96435 0.92003 1.20597 0.97903 0.99426 1.03344 1.18422 1.00366 0.95197 1.02143 1.20436 0.94271 0.99871 0.97032 1.20716 1.01514 0.95195 0.99614 1.21010 0.97292 0.96328 1.01848 1.20231 0.95669 0.98069 0.95110 1.18760 0.93850 0.94175 0.97124 0.90907 0.72473 0.87038 0.92562 0.82995 0.83626 0.91900 0.92314 0.90718 0.88609 0.89783 0.88667 0.84473 0.85136 0.83763 0.84726 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.53 10.12 21.67 0.22 -43.31 16 2 C 0.02 0.89 5.11 84.95 0.43 1.32 16 3 Si 0.98 34.68 29.56 68.60 2.03 36.71 16 4 H -0.22 -6.26 5.95 99.48 0.59 -5.67 16 5 H -0.28 -9.77 7.11 99.48 0.71 -9.06 16 6 H -0.28 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.38 -18.69 7.65 84.09 0.64 -18.05 16 8 H 0.13 5.80 6.46 -2.91 -0.02 5.78 16 9 N -0.27 -14.44 2.83 -331.34 -0.94 -15.38 16 10 C -0.04 -2.34 6.77 39.91 0.27 -2.07 16 11 C 0.58 28.80 7.77 86.51 0.67 29.47 16 12 O -0.59 -30.72 16.55 -4.24 -0.07 -30.79 16 13 N -0.68 -28.27 4.86 -444.92 -2.16 -30.43 16 14 C 0.12 3.99 4.03 45.28 0.18 4.17 16 15 H 0.07 2.56 7.65 -2.39 -0.02 2.54 16 16 C -0.14 -3.71 7.69 31.23 0.24 -3.47 16 17 C 0.10 2.30 4.84 45.20 0.22 2.52 16 18 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 19 N -0.85 -20.21 8.13 -167.47 -1.36 -21.58 16 20 C -0.10 -2.59 0.82 -52.26 -0.04 -2.64 16 21 C -0.14 -3.66 7.23 30.88 0.22 -3.44 16 22 C -0.13 -2.34 8.08 31.23 0.25 -2.09 16 23 C -0.10 -1.84 7.86 30.94 0.24 -1.60 16 24 C -0.18 -9.40 10.55 22.63 0.24 -9.16 16 25 C -0.16 -7.79 6.16 -21.34 -0.13 -7.93 16 26 C -0.10 -4.04 10.06 22.32 0.22 -3.81 16 27 C -0.15 -5.67 9.97 22.03 0.22 -5.45 16 28 C -0.14 -5.84 10.02 22.32 0.22 -5.61 16 29 C -0.07 -3.44 8.47 22.38 0.19 -3.25 16 30 C 0.08 3.97 6.04 39.06 0.24 4.21 16 31 H 0.28 13.35 8.31 -92.71 -0.77 12.58 16 32 H 0.43 17.61 3.36 -92.71 -0.31 17.30 16 33 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.36 7.14 9.08 -89.69 -0.81 6.32 16 36 H 0.35 7.84 6.70 -89.70 -0.60 7.24 16 37 H 0.06 1.73 6.91 -2.39 -0.02 1.72 16 38 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.14 6.51 8.06 -2.91 -0.02 6.49 16 44 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 45 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 46 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 47 H 0.11 5.30 6.55 -2.91 -0.02 5.28 16 Total: -1.00 -66.04 373.71 1.44 -64.60 By element: Atomic # 1 Polarization: 67.86 SS G_CDS: -0.81 Total: 67.05 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: 4.54 Total: -26.87 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -4.24 Total: -110.70 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.07 Total: -30.79 kcal Atomic # 14 Polarization: 34.68 SS G_CDS: 2.03 Total: 36.71 kcal Total: -66.04 1.44 -64.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.775 kcal (2) G-P(sol) polarization free energy of solvation -66.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds