Wall clock time and date at job start Sat Apr 11 2020 05:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42907 * 113.99609 * 2 1 4 4 C 1.53001 * 109.46712 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47178 * 65.00280 * 4 3 2 6 6 C 1.37098 * 119.99690 * 264.95331 * 5 4 3 7 7 H 1.08005 * 120.00255 * 137.21372 * 6 5 4 8 8 C 1.38949 * 120.00388 * 317.21822 * 6 5 4 9 9 N 1.31412 * 119.99694 * 349.35500 * 8 6 5 10 10 Si 1.86796 * 120.00467 * 169.36153 * 8 6 5 11 11 H 1.48492 * 109.47244 * 59.99409 * 10 8 6 12 12 H 1.48495 * 109.47341 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47028 * 299.99646 * 10 8 6 14 14 C 1.34769 * 120.00533 * 84.95214 * 5 4 3 15 15 O 1.21297 * 119.99718 * 6.19411 * 14 5 4 16 16 C 1.50700 * 120.00644 * 186.19358 * 14 5 4 17 17 C 1.53016 * 109.46417 * 273.54563 * 16 14 5 18 18 C 1.53082 * 109.41619 * 179.50547 * 17 16 14 19 19 C 1.52469 * 109.58568 * 59.14533 * 18 17 16 20 20 C 1.52464 * 110.75066 * 301.43691 * 19 18 17 21 21 C 1.53009 * 109.46941 * 153.51348 * 16 14 5 22 22 N 1.46834 * 110.54033 * 64.30454 * 19 18 17 23 23 C 1.34690 * 106.43006 * 118.50665 * 22 19 18 24 24 O 1.21531 * 123.79157 * 179.97438 * 23 22 19 25 25 N 1.33862 * 112.41951 * 359.97438 * 23 22 19 26 26 C 1.34917 * 111.60952 * 359.97438 * 25 23 22 27 27 O 1.21236 * 127.25302 * 180.02562 * 26 25 23 28 28 H 1.08997 * 109.47072 * 59.99863 * 1 2 3 29 29 H 1.08998 * 109.46910 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46723 * 300.00260 * 1 2 3 31 31 H 1.08994 * 109.47437 * 60.00482 * 3 2 1 32 32 H 1.08998 * 109.46963 * 300.00001 * 3 2 1 33 33 H 1.08995 * 109.47468 * 304.99941 * 4 3 2 34 34 H 1.08995 * 109.46813 * 184.99731 * 4 3 2 35 35 H 0.96999 * 120.00139 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.45834 * 33.52819 * 16 14 5 37 37 H 1.09004 * 109.47951 * 299.48619 * 17 16 14 38 38 H 1.09000 * 109.48085 * 59.52030 * 17 16 14 39 39 H 1.08997 * 109.44840 * 299.11226 * 18 17 16 40 40 H 1.09000 * 109.44823 * 179.18165 * 18 17 16 41 41 H 1.09004 * 109.45030 * 298.52639 * 20 19 18 42 42 H 1.09009 * 109.45139 * 178.60293 * 20 19 18 43 43 H 1.09003 * 109.47880 * 300.47768 * 21 16 14 44 44 H 1.08996 * 109.48032 * 60.50717 * 21 16 14 45 45 H 0.96996 * 126.78278 * 298.48471 * 22 19 18 46 46 H 0.97002 * 124.19709 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5646 -1.2528 6 6 4.1966 -0.7874 -1.3075 7 1 3.8520 -1.3570 -2.1580 8 6 4.8637 -1.4250 -0.2687 9 7 5.4645 -0.7154 0.6599 10 14 4.9066 -3.2909 -0.1921 11 1 5.5583 -3.8217 -1.4163 12 1 5.6750 -3.7198 1.0040 13 1 3.5199 -3.8147 -0.1028 14 6 4.1636 1.3229 -2.3509 15 8 4.0779 2.5305 -2.2758 16 6 4.4801 0.6708 -3.6721 17 6 5.9903 0.4512 -3.7835 18 6 6.3094 -0.2225 -5.1206 19 6 5.8210 0.6577 -6.2657 20 6 4.3209 0.9063 -6.1542 21 6 4.0099 1.5754 -4.8130 22 7 6.5540 1.9299 -6.2865 23 6 7.1970 1.9798 -7.4689 24 8 7.9028 2.9064 -7.8159 25 7 6.9713 0.8943 -8.2190 26 6 6.1530 0.0212 -7.5960 27 8 5.7651 -1.0483 -8.0151 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5683 0.8409 34 1 3.9785 2.1766 0.0889 35 1 5.9305 -1.1604 1.3849 36 1 3.9678 -0.2893 -3.7351 37 1 6.5023 1.4120 -3.7293 38 1 6.3262 -0.1865 -2.9658 39 1 5.8097 -1.1900 -5.1678 40 1 7.3864 -0.3659 -5.2068 41 1 3.7899 -0.0435 -6.2178 42 1 3.9993 1.5568 -6.9676 43 1 2.9354 1.7383 -4.7285 44 1 4.5284 2.5324 -4.7553 45 1 6.5714 2.6016 -5.5870 46 1 7.3493 0.7530 -9.1012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001629261590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:28 Heat of formation + Delta-G solvation = -152.224119 kcal Electronic energy + Delta-G solvation = -31407.589935 eV Core-core repulsion = 27104.079216 eV Total energy + Delta-G solvation = -4303.510719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.70008 -40.85346 -39.77592 -38.95285 -38.28260 -36.74394 -36.44718 -34.21232 -33.40771 -31.97283 -31.53518 -30.32455 -27.25419 -26.64793 -25.79099 -24.14706 -23.87881 -23.50291 -22.25205 -21.14445 -20.67045 -19.14867 -18.66253 -17.90822 -17.56491 -17.53919 -17.16308 -17.07277 -16.88289 -16.53803 -16.29903 -16.07045 -15.82155 -15.75302 -15.29327 -15.18719 -14.82526 -14.75460 -14.05822 -13.69313 -13.56645 -13.33178 -13.22649 -13.10825 -12.88735 -12.81852 -12.72372 -12.46740 -12.41958 -12.17625 -12.07784 -11.97292 -11.79329 -11.49323 -11.42715 -11.37247 -11.16023 -10.87220 -10.51180 -10.43048 -10.12987 -9.28440 -8.13578 -5.95736 0.50410 1.43086 1.50256 1.55862 1.61101 1.93110 2.10100 2.11575 2.42233 2.85529 3.00865 3.09430 3.27320 3.47636 3.56927 4.00639 4.09110 4.20553 4.28560 4.31194 4.35724 4.42637 4.49075 4.52223 4.56235 4.61797 4.67652 4.75168 4.78984 4.85616 4.90828 4.97286 5.04886 5.08508 5.15962 5.19741 5.43247 5.46318 5.49222 5.64461 5.74462 5.88260 6.18223 6.35694 6.44267 6.52509 7.10336 7.27897 7.72211 8.13409 8.89288 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013657 B = 0.003690 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.736834 B = 7585.689137 C = 8342.084740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.064 3.936 4 C 0.112 3.888 5 N -0.442 5.442 6 C -0.319 4.319 7 H 0.093 0.907 8 C 0.008 3.992 9 N -0.904 5.904 10 Si 0.970 3.030 11 H -0.259 1.259 12 H -0.292 1.292 13 H -0.274 1.274 14 C 0.468 3.532 15 O -0.635 6.635 16 C -0.083 4.083 17 C -0.089 4.089 18 C -0.102 4.102 19 C 0.127 3.873 20 C -0.102 4.102 21 C -0.089 4.089 22 N -0.702 5.702 23 C 0.709 3.291 24 O -0.583 6.583 25 N -0.668 5.668 26 C 0.546 3.454 27 O -0.480 6.480 28 H 0.040 0.960 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.266 0.734 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.445 0.555 46 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 -0.891 -10.907 11.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.013 4.013 4 C -0.012 4.012 5 N -0.159 5.159 6 C -0.447 4.447 7 H 0.110 0.890 8 C -0.194 4.194 9 N -0.542 5.542 10 Si 0.796 3.204 11 H -0.183 1.183 12 H -0.218 1.218 13 H -0.199 1.199 14 C 0.259 3.741 15 O -0.523 6.523 16 C -0.104 4.104 17 C -0.127 4.127 18 C -0.140 4.140 19 C 0.036 3.964 20 C -0.141 4.141 21 C -0.127 4.127 22 N -0.367 5.367 23 C 0.408 3.592 24 O -0.459 6.459 25 N -0.339 5.339 26 C 0.332 3.668 27 O -0.350 6.350 28 H 0.059 0.941 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.102 0.898 41 H 0.119 0.881 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.291 0.709 46 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -2.772 -0.636 -10.996 11.358 hybrid contribution 0.089 -0.175 0.683 0.710 sum -2.682 -0.812 -10.314 10.688 Atomic orbital electron populations 1.22880 0.80733 1.03295 1.00201 1.88074 1.20349 1.27741 1.95288 1.22828 0.94732 0.84560 0.99199 1.21347 0.90966 0.97657 0.91273 1.43484 1.56933 1.07497 1.07953 1.19417 1.34853 0.82428 1.07971 0.88952 1.26015 0.94136 1.03093 0.96124 1.69912 1.32993 1.37254 1.14090 0.85328 0.78167 0.79036 0.77916 1.18329 1.21789 1.19942 1.21191 0.78785 0.86383 0.87762 1.90488 1.58574 1.15908 1.87360 1.21047 0.98080 1.00105 0.91207 1.21190 0.93620 1.00800 0.97099 1.21636 1.02534 0.98692 0.91175 1.21151 0.95936 0.84942 0.94370 1.21658 0.90339 1.03699 0.98363 1.21258 1.01536 0.98151 0.91751 1.45694 1.50070 1.22391 1.18522 1.15927 0.79859 0.81890 0.81522 1.91028 1.42885 1.36623 1.75400 1.44222 1.47732 1.19716 1.22233 1.20571 0.76534 0.83295 0.86371 1.90837 1.53037 1.19813 1.71297 0.94089 0.88845 0.93255 0.92070 0.95009 0.88827 0.92952 0.92477 0.88871 0.92420 0.91449 0.88249 0.89752 0.88137 0.89161 0.91475 0.91637 0.70879 0.71451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.40 -15.86 10.42 -148.98 -1.55 -17.41 16 3 C 0.06 2.56 6.25 71.98 0.45 3.01 16 4 C 0.11 5.23 5.31 86.38 0.46 5.69 16 5 N -0.44 -20.78 2.46 -635.54 -1.56 -22.34 16 6 C -0.32 -14.94 7.79 84.04 0.65 -14.28 16 7 H 0.09 4.10 6.54 -2.91 -0.02 4.08 16 8 C 0.01 0.37 5.13 84.93 0.44 0.81 16 9 N -0.90 -46.74 11.27 21.66 0.24 -46.49 16 10 Si 0.97 38.70 29.57 68.60 2.03 40.73 16 11 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 12 H -0.29 -11.85 7.11 99.48 0.71 -11.15 16 13 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 14 C 0.47 20.55 6.68 87.66 0.59 21.14 16 15 O -0.63 -30.75 15.76 -3.08 -0.05 -30.79 16 16 C -0.08 -2.75 1.82 -11.53 -0.02 -2.77 16 17 C -0.09 -2.67 5.03 30.63 0.15 -2.51 16 18 C -0.10 -2.31 4.97 30.45 0.15 -2.15 16 19 C 0.13 2.59 0.83 2.59 0.00 2.59 16 20 C -0.10 -2.04 4.98 30.44 0.15 -1.89 16 21 C -0.09 -2.37 4.64 30.62 0.14 -2.23 16 22 N -0.70 -14.68 5.25 -442.70 -2.32 -17.00 16 23 C 0.71 16.08 9.00 179.37 1.61 17.70 16 24 O -0.58 -17.36 18.04 -3.81 -0.07 -17.43 16 25 N -0.67 -11.96 5.72 -441.16 -2.52 -14.49 16 26 C 0.55 11.03 7.44 87.78 0.65 11.69 16 27 O -0.48 -11.74 18.02 -2.89 -0.05 -11.79 16 28 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 4.81 5.59 -2.39 -0.01 4.80 16 34 H 0.05 2.54 7.50 -2.39 -0.02 2.52 16 35 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 36 H 0.09 3.06 6.54 -2.39 -0.02 3.04 16 37 H 0.06 1.75 7.36 -2.38 -0.02 1.73 16 38 H 0.07 2.42 7.61 -2.39 -0.02 2.40 16 39 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.06 1.84 7.10 -2.39 -0.02 1.83 16 45 H 0.44 9.38 7.75 -92.71 -0.72 8.67 16 46 H 0.44 5.86 8.96 -92.71 -0.83 5.03 16 Total: -1.00 -65.28 373.37 0.31 -64.98 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -0.51 Total: 33.28 kcal Atomic # 6 Polarization: 32.07 SS G_CDS: 6.68 Total: 38.75 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -6.17 Total: -100.32 kcal Atomic # 8 Polarization: -75.70 SS G_CDS: -1.72 Total: -77.42 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Total: -65.28 0.31 -64.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001629261590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.248 kcal (2) G-P(sol) polarization free energy of solvation -65.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds