Wall clock time and date at job start Sat Apr 11 2020 05:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99589 * 2 1 4 4 H 1.48499 * 109.47275 * 269.99945 * 3 2 1 5 5 H 1.48499 * 109.47082 * 30.00163 * 3 2 1 6 6 H 1.48497 * 109.46811 * 150.00081 * 3 2 1 7 7 C 1.38805 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00252 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00308 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00440 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46967 * 34.99641 * 10 9 7 12 12 C 1.52997 * 109.47170 * 154.99825 * 10 9 7 13 13 N 1.46497 * 109.46983 * 305.00174 * 12 10 9 14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 10 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.50703 * 109.47064 * 179.97438 * 16 14 13 18 18 C 1.36106 * 120.12425 * 264.99753 * 17 16 14 19 19 C 1.39321 * 121.06575 * 179.97438 * 18 17 16 20 20 C 1.36176 * 120.86815 * 359.97438 * 19 18 17 21 21 C 1.40393 * 119.61518 * 0.02595 * 20 19 18 22 22 C 1.40770 * 121.38844 * 179.97438 * 21 20 19 23 23 C 1.36590 * 118.14918 * 179.08550 * 22 21 20 24 24 C 1.39335 * 119.93607 * 0.88272 * 23 22 21 25 25 N 1.31083 * 121.75226 * 359.38819 * 24 23 22 26 26 C 1.33693 * 121.32036 * 0.02726 * 25 24 23 27 27 C 1.53006 * 109.47078 * 275.00144 * 10 9 7 28 28 C 1.52997 * 117.49906 * 128.74286 * 27 10 9 29 29 C 1.52995 * 117.49774 * 60.08400 * 27 10 9 30 30 H 0.97000 * 120.00265 * 359.97438 * 1 2 3 31 31 H 0.97006 * 119.99592 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46832 * 184.99991 * 12 10 9 33 33 H 1.09002 * 109.47153 * 65.00182 * 12 10 9 34 34 H 0.96995 * 120.00423 * 359.97438 * 13 12 10 35 35 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 36 36 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 37 37 H 1.08005 * 119.47275 * 0.02562 * 18 17 16 38 38 H 1.07994 * 119.56762 * 180.02562 * 19 18 17 39 39 H 1.07998 * 120.19214 * 180.02562 * 20 19 18 40 40 H 1.08001 * 120.92566 * 359.97438 * 22 21 20 41 41 H 1.07996 * 120.02824 * 180.27092 * 23 22 21 42 42 H 1.07993 * 119.12182 * 179.41524 * 24 23 22 43 43 H 1.08998 * 115.54789 * 274.41495 * 27 10 9 44 44 H 1.08999 * 117.49834 * 0.02562 * 28 27 10 45 45 H 1.09003 * 117.49691 * 145.01926 * 28 27 10 46 46 H 1.09007 * 117.49974 * 214.98222 * 29 27 10 47 47 H 1.09002 * 117.50306 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 1 3.5646 -3.2065 -0.5901 12 6 5.4991 -2.2588 -0.6113 13 7 5.3610 -1.6640 -1.9429 14 6 6.4586 -1.3869 -2.6743 15 8 7.5607 -1.6296 -2.2299 16 6 6.3166 -0.7745 -4.0440 17 6 7.6827 -0.5659 -4.6451 18 6 8.3039 0.6394 -4.5276 19 6 9.5669 0.8537 -5.0752 20 6 10.2161 -0.1391 -5.7439 21 6 9.6054 -1.3954 -5.8845 22 6 10.2423 -2.4479 -6.5687 23 6 9.5959 -3.6484 -6.6496 24 6 8.3334 -3.7982 -6.0793 25 7 7.7406 -2.8142 -5.4478 26 6 8.3234 -1.6175 -5.3228 27 6 4.2589 -2.9750 1.4361 28 6 3.8351 -4.4162 1.7257 29 6 2.9758 -3.2509 2.2223 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3619 -0.0014 32 1 6.0105 -3.2179 -0.6930 33 1 6.0786 -1.5913 0.0265 34 1 4.4796 -1.4703 -2.2986 35 1 5.7366 -1.4415 -4.6818 36 1 5.8058 0.1849 -3.9618 37 1 7.8102 1.4426 -4.0006 38 1 10.0377 1.8196 -4.9672 39 1 11.1951 0.0388 -6.1637 40 1 11.2212 -2.3142 -7.0050 41 1 10.0586 -4.4778 -7.1637 42 1 7.8302 -4.7503 -6.1593 43 1 5.1123 -2.5807 1.9878 44 1 3.4522 -5.0054 0.8924 45 1 4.4095 -4.9701 2.4683 46 1 2.9851 -3.0386 3.2914 47 1 2.0270 -3.0729 1.7159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661151529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:35 Heat of formation + Delta-G solvation = 55.450315 kcal Electronic energy + Delta-G solvation = -28508.451663 eV Core-core repulsion = 24657.088398 eV Total energy + Delta-G solvation = -3851.363265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.07729 -39.34454 -37.68971 -37.18567 -34.73061 -34.16468 -33.40272 -31.63327 -31.09442 -30.69507 -28.85537 -27.22834 -24.38646 -23.74923 -23.54066 -22.34749 -21.70487 -21.26937 -20.17273 -19.55282 -18.43934 -17.76352 -17.11718 -16.96850 -16.63496 -15.61151 -15.43526 -15.08487 -14.79644 -14.50798 -14.43169 -14.25153 -14.08597 -13.76097 -13.70466 -13.25206 -13.06739 -12.98833 -12.78359 -12.53696 -11.94728 -11.86336 -11.74488 -11.48289 -11.40717 -11.27768 -10.93670 -10.87850 -10.71561 -10.63876 -10.26893 -9.73564 -9.69479 -9.60727 -9.46744 -9.36067 -9.01318 -8.91098 -8.66962 -8.30715 -7.35708 -5.82330 -3.18369 0.22852 0.68722 1.82366 2.77412 2.97597 3.32393 3.37799 3.41966 3.55254 4.00543 4.17454 4.32823 4.42156 4.53781 4.53974 4.61724 4.70886 4.87895 4.98039 5.12690 5.14303 5.17049 5.26481 5.30699 5.36169 5.44767 5.52883 5.57633 5.65565 5.70057 5.78528 5.80158 5.86395 5.91022 5.96902 6.01748 6.15169 6.22129 6.24829 6.29814 6.36079 6.52138 6.57239 6.71095 6.75558 6.86227 7.00714 7.79946 7.90382 7.92362 8.35688 8.56957 9.13453 9.86059 10.05803 11.35457 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.002872 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.559603 B = 9746.049461 C =10959.261443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.880 3.120 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.240 4.240 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.199 3.801 11 H 0.064 0.936 12 C 0.118 3.882 13 N -0.718 5.718 14 C 0.521 3.479 15 O -0.547 6.547 16 C -0.101 4.101 17 C -0.030 4.030 18 C -0.096 4.096 19 C -0.109 4.109 20 C -0.104 4.104 21 C -0.102 4.102 22 C -0.060 4.060 23 C -0.178 4.178 24 C 0.128 3.872 25 N -0.464 5.464 26 C 0.142 3.858 27 C -0.164 4.164 28 C -0.193 4.193 29 C -0.154 4.154 30 H 0.259 0.741 31 H 0.362 0.638 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.410 0.590 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.158 0.842 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.714 -4.125 -13.059 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.188 4.188 3 Si 0.710 3.290 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.110 0.890 9 N -0.384 5.384 10 C 0.089 3.911 11 H 0.082 0.918 12 C -0.006 4.006 13 N -0.371 5.371 14 C 0.307 3.693 15 O -0.425 6.425 16 C -0.141 4.141 17 C -0.031 4.031 18 C -0.116 4.116 19 C -0.127 4.127 20 C -0.123 4.123 21 C -0.104 4.104 22 C -0.086 4.086 23 C -0.198 4.198 24 C -0.045 4.045 25 N -0.172 5.172 26 C 0.021 3.979 27 C -0.185 4.185 28 C -0.231 4.231 29 C -0.192 4.192 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.246 0.754 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.175 0.825 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 19.378 -4.366 -12.327 23.378 hybrid contribution 1.020 1.432 -0.264 1.777 sum 20.397 -2.935 -12.592 24.150 Atomic orbital electron populations 1.69689 1.05074 1.25840 1.57290 1.24638 0.95136 0.97043 1.01991 0.86626 0.79308 0.85278 0.77757 1.21098 1.21867 1.20369 1.19012 0.80331 0.94536 1.43072 0.89015 1.42838 1.04076 1.01723 1.89803 1.20020 0.89867 0.89630 0.91570 0.91811 1.21596 0.98123 0.98028 0.82872 1.45975 1.09511 1.63625 1.17953 1.20267 0.84480 0.78292 0.86288 1.90671 1.25945 1.53461 1.72407 1.20583 0.95246 1.03445 0.94804 1.18981 0.95541 0.92103 0.96501 1.20817 0.95149 0.96988 0.98606 1.20875 0.94890 0.99409 0.97476 1.20929 0.99719 0.91987 0.99663 1.18798 0.95625 0.95580 1.00400 1.21432 0.99287 0.92261 0.95631 1.21872 0.97055 0.98512 1.02343 1.22962 0.92168 0.97678 0.91678 1.68001 1.35460 0.99575 1.14127 1.18616 0.91112 0.91800 0.96399 1.22951 0.99018 0.97081 0.99484 1.22950 1.05429 0.91327 1.03403 1.22847 0.96807 1.00427 0.99075 0.93039 0.80509 0.91439 0.92061 0.75434 0.86963 0.87946 0.85232 0.85450 0.85411 0.84602 0.84690 0.82509 0.89221 0.89392 0.90076 0.90235 0.87106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.93 13.97 55.49 0.78 -27.15 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 21.21 27.73 -169.99 -4.71 16.49 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 7 C -0.24 -6.16 9.11 -15.06 -0.14 -6.30 16 8 H 0.09 2.54 7.14 -52.48 -0.37 2.17 16 9 N -0.74 -15.98 4.34 -53.42 -0.23 -16.21 16 10 C 0.20 3.59 2.70 -67.93 -0.18 3.41 16 11 H 0.06 1.19 7.84 -51.93 -0.41 0.78 16 12 C 0.12 1.97 5.22 -4.04 -0.02 1.95 16 13 N -0.72 -11.57 5.39 -60.30 -0.32 -11.90 16 14 C 0.52 8.55 7.82 -10.98 -0.09 8.47 16 15 O -0.55 -10.75 16.03 5.56 0.09 -10.66 16 16 C -0.10 -1.35 5.56 -29.03 -0.16 -1.51 16 17 C -0.03 -0.41 4.38 -104.51 -0.46 -0.87 16 18 C -0.10 -1.13 9.56 -39.94 -0.38 -1.51 16 19 C -0.11 -1.08 9.96 -39.92 -0.40 -1.48 16 20 C -0.10 -1.02 9.78 -39.51 -0.39 -1.41 16 21 C -0.10 -1.20 5.74 -106.80 -0.61 -1.81 16 22 C -0.06 -0.55 9.90 -39.22 -0.39 -0.94 16 23 C -0.18 -1.53 10.03 -39.77 -0.40 -1.93 16 24 C 0.13 1.36 11.15 -17.46 -0.19 1.16 16 25 N -0.46 -6.45 9.52 -10.98 -0.10 -6.55 16 26 C 0.14 1.99 6.58 -84.86 -0.56 1.43 16 27 C -0.16 -2.81 5.36 -90.62 -0.49 -3.29 16 28 C -0.19 -2.96 10.18 -26.70 -0.27 -3.23 16 29 C -0.15 -2.77 9.78 -26.70 -0.26 -3.03 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.36 7.93 5.66 -40.82 -0.23 7.70 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.41 6.47 8.14 -40.82 -0.33 6.14 16 35 H 0.11 1.43 7.73 -51.93 -0.40 1.03 16 36 H 0.10 1.16 8.04 -51.93 -0.42 0.74 16 37 H 0.13 1.31 8.04 -52.48 -0.42 0.88 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 42 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 44 H 0.09 1.31 8.05 -51.93 -0.42 0.89 16 45 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.11 2.31 6.23 -51.93 -0.32 1.98 16 LS Contribution 392.15 15.07 5.91 5.91 Total: -1.00 -33.48 392.15 -10.80 -44.28 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -6.72 Total: 16.56 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -5.48 Total: -10.77 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: 0.11 Total: -61.82 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.71 Total: 16.49 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.48 -10.80 -44.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661151529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.733 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds