Wall clock time and date at job start Sat Apr 11 2020 05:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99589 * 2 1 4 4 H 1.48499 * 109.47275 * 269.99945 * 3 2 1 5 5 H 1.48499 * 109.47082 * 30.00163 * 3 2 1 6 6 H 1.48497 * 109.46811 * 150.00081 * 3 2 1 7 7 C 1.38805 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00252 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00308 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00440 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46967 * 34.99641 * 10 9 7 12 12 C 1.52997 * 109.47170 * 154.99825 * 10 9 7 13 13 N 1.46497 * 109.46983 * 305.00174 * 12 10 9 14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 10 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.50703 * 109.47064 * 179.97438 * 16 14 13 18 18 C 1.36106 * 120.12425 * 264.99753 * 17 16 14 19 19 C 1.39321 * 121.06575 * 179.97438 * 18 17 16 20 20 C 1.36176 * 120.86815 * 359.97438 * 19 18 17 21 21 C 1.40393 * 119.61518 * 0.02595 * 20 19 18 22 22 C 1.40770 * 121.38844 * 179.97438 * 21 20 19 23 23 C 1.36590 * 118.14918 * 179.08550 * 22 21 20 24 24 C 1.39335 * 119.93607 * 0.88272 * 23 22 21 25 25 N 1.31083 * 121.75226 * 359.38819 * 24 23 22 26 26 C 1.33693 * 121.32036 * 0.02726 * 25 24 23 27 27 C 1.53006 * 109.47078 * 275.00144 * 10 9 7 28 28 C 1.52997 * 117.49906 * 128.74286 * 27 10 9 29 29 C 1.52995 * 117.49774 * 60.08400 * 27 10 9 30 30 H 0.97000 * 120.00265 * 359.97438 * 1 2 3 31 31 H 0.97006 * 119.99592 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46832 * 184.99991 * 12 10 9 33 33 H 1.09002 * 109.47153 * 65.00182 * 12 10 9 34 34 H 0.96995 * 120.00423 * 359.97438 * 13 12 10 35 35 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 36 36 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 37 37 H 1.08005 * 119.47275 * 0.02562 * 18 17 16 38 38 H 1.07994 * 119.56762 * 180.02562 * 19 18 17 39 39 H 1.07998 * 120.19214 * 180.02562 * 20 19 18 40 40 H 1.08001 * 120.92566 * 359.97438 * 22 21 20 41 41 H 1.07996 * 120.02824 * 180.27092 * 23 22 21 42 42 H 1.07993 * 119.12182 * 179.41524 * 24 23 22 43 43 H 1.08998 * 115.54789 * 274.41495 * 27 10 9 44 44 H 1.08999 * 117.49834 * 0.02562 * 28 27 10 45 45 H 1.09003 * 117.49691 * 145.01926 * 28 27 10 46 46 H 1.09007 * 117.49974 * 214.98222 * 29 27 10 47 47 H 1.09002 * 117.50306 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 1 3.5646 -3.2065 -0.5901 12 6 5.4991 -2.2588 -0.6113 13 7 5.3610 -1.6640 -1.9429 14 6 6.4586 -1.3869 -2.6743 15 8 7.5607 -1.6296 -2.2299 16 6 6.3166 -0.7745 -4.0440 17 6 7.6827 -0.5659 -4.6451 18 6 8.3039 0.6394 -4.5276 19 6 9.5669 0.8537 -5.0752 20 6 10.2161 -0.1391 -5.7439 21 6 9.6054 -1.3954 -5.8845 22 6 10.2423 -2.4479 -6.5687 23 6 9.5959 -3.6484 -6.6496 24 6 8.3334 -3.7982 -6.0793 25 7 7.7406 -2.8142 -5.4478 26 6 8.3234 -1.6175 -5.3228 27 6 4.2589 -2.9750 1.4361 28 6 3.8351 -4.4162 1.7257 29 6 2.9758 -3.2509 2.2223 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3619 -0.0014 32 1 6.0105 -3.2179 -0.6930 33 1 6.0786 -1.5913 0.0265 34 1 4.4796 -1.4703 -2.2986 35 1 5.7366 -1.4415 -4.6818 36 1 5.8058 0.1849 -3.9618 37 1 7.8102 1.4426 -4.0006 38 1 10.0377 1.8196 -4.9672 39 1 11.1951 0.0388 -6.1637 40 1 11.2212 -2.3142 -7.0050 41 1 10.0586 -4.4778 -7.1637 42 1 7.8302 -4.7503 -6.1593 43 1 5.1123 -2.5807 1.9878 44 1 3.4522 -5.0054 0.8924 45 1 4.4095 -4.9701 2.4683 46 1 2.9851 -3.0386 3.2914 47 1 2.0270 -3.0729 1.7159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661151529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:34 Heat of formation + Delta-G solvation = 34.549924 kcal Electronic energy + Delta-G solvation = -28509.357972 eV Core-core repulsion = 24657.088398 eV Total energy + Delta-G solvation = -3852.269574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.88457 -40.62220 -39.11367 -38.02105 -36.15483 -35.17957 -35.01485 -33.14596 -32.32046 -31.44453 -30.30274 -28.35073 -25.38560 -25.03240 -24.50386 -23.88489 -23.05850 -22.27978 -21.54566 -20.94468 -19.60950 -19.17483 -18.03723 -17.88537 -17.74992 -17.00136 -16.88383 -16.31799 -16.06403 -15.67966 -15.52831 -15.40223 -15.18304 -14.96382 -14.80594 -14.62101 -14.30831 -14.20289 -13.88735 -13.81734 -13.23134 -13.05806 -12.79918 -12.75210 -12.65671 -12.53297 -12.37933 -12.28793 -12.13804 -12.08526 -11.65344 -11.44699 -11.08533 -11.01756 -10.90538 -10.76017 -10.38442 -10.03681 -9.68695 -9.31642 -9.10892 -7.95843 -5.28724 -0.52044 -0.08606 1.04076 1.40293 1.42524 1.48932 1.69458 2.00409 2.34113 2.51946 2.98670 3.17541 3.38866 3.41006 3.54733 3.64126 3.81703 3.82455 3.90110 4.00511 4.08558 4.12090 4.17347 4.27780 4.31123 4.33414 4.38707 4.47281 4.51853 4.58189 4.62562 4.63998 4.78438 4.88818 4.89365 5.08576 5.10603 5.15467 5.15706 5.17219 5.38121 5.46821 5.46892 5.48519 5.52755 5.64855 5.85118 5.97095 6.26093 6.59451 7.02027 7.11795 7.27385 7.85746 8.05733 9.25268 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.002872 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.559603 B = 9746.049461 C =10959.261443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.058 4.058 3 Si 0.943 3.057 4 H -0.274 1.274 5 H -0.305 1.305 6 H -0.262 1.262 7 C -0.207 4.207 8 H 0.064 0.936 9 N -0.741 5.741 10 C 0.202 3.798 11 H 0.057 0.943 12 C 0.129 3.871 13 N -0.718 5.718 14 C 0.522 3.478 15 O -0.580 6.580 16 C -0.093 4.093 17 C -0.065 4.065 18 C -0.102 4.102 19 C -0.120 4.120 20 C -0.098 4.098 21 C -0.126 4.126 22 C -0.059 4.059 23 C -0.177 4.177 24 C 0.116 3.884 25 N -0.506 5.506 26 C 0.111 3.889 27 C -0.171 4.171 28 C -0.163 4.163 29 C -0.174 4.174 30 H 0.255 0.745 31 H 0.363 0.637 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.411 0.589 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.139 0.861 38 H 0.156 0.844 39 H 0.162 0.838 40 H 0.172 0.828 41 H 0.172 0.828 42 H 0.177 0.823 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.110 0.890 46 H 0.089 0.911 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.269 -4.325 -14.042 27.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.250 4.250 3 Si 0.772 3.228 4 H -0.200 1.200 5 H -0.233 1.233 6 H -0.187 1.187 7 C -0.338 4.338 8 H 0.082 0.918 9 N -0.383 5.383 10 C 0.094 3.906 11 H 0.075 0.925 12 C 0.004 3.996 13 N -0.370 5.370 14 C 0.310 3.690 15 O -0.460 6.460 16 C -0.133 4.133 17 C -0.066 4.066 18 C -0.121 4.121 19 C -0.137 4.137 20 C -0.117 4.117 21 C -0.128 4.128 22 C -0.085 4.085 23 C -0.196 4.196 24 C -0.056 4.056 25 N -0.215 5.215 26 C -0.009 4.009 27 C -0.192 4.192 28 C -0.200 4.200 29 C -0.212 4.212 30 H 0.064 0.936 31 H 0.197 0.803 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.247 0.753 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.157 0.843 38 H 0.174 0.826 39 H 0.180 0.820 40 H 0.190 0.810 41 H 0.189 0.811 42 H 0.194 0.806 43 H 0.121 0.879 44 H 0.110 0.890 45 H 0.128 0.872 46 H 0.107 0.893 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 22.979 -4.597 -13.319 26.955 hybrid contribution -0.022 1.310 0.002 1.310 sum 22.956 -3.287 -13.317 26.742 Atomic orbital electron populations 1.69858 1.06955 1.26248 1.60351 1.25302 0.95786 1.00494 1.03399 0.85595 0.78300 0.80795 0.78138 1.20001 1.23257 1.18702 1.18904 0.81966 0.93165 1.39718 0.91816 1.42781 1.02612 1.03224 1.89708 1.20095 0.90164 0.87861 0.92491 0.92480 1.21445 0.96742 0.98367 0.83018 1.46002 1.09667 1.63514 1.17797 1.20763 0.83732 0.77487 0.87053 1.90641 1.27129 1.54901 1.73332 1.20541 0.96120 1.03881 0.92749 1.19132 0.95942 0.93222 0.98316 1.21108 0.96016 0.96640 0.98376 1.21226 0.94335 1.00890 0.97278 1.21366 1.00755 0.91029 0.98535 1.19190 0.95315 0.97300 1.01006 1.21897 1.00458 0.91556 0.94590 1.22246 0.96126 0.99608 1.01622 1.23510 0.93315 0.97817 0.90969 1.67961 1.36962 1.00443 1.16114 1.18918 0.92472 0.92049 0.97495 1.22899 0.98875 0.99090 0.98346 1.23023 1.03243 0.90265 1.03477 1.22723 0.95565 1.03514 0.99374 0.93647 0.80334 0.90710 0.92391 0.75271 0.87017 0.86217 0.84280 0.82607 0.82029 0.81047 0.81096 0.80578 0.87948 0.89010 0.87216 0.89289 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.93 13.97 21.65 0.30 -60.63 16 2 C -0.06 -3.28 5.50 84.86 0.47 -2.82 16 3 Si 0.94 44.18 27.73 68.60 1.90 46.08 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.31 -14.90 7.11 99.48 0.71 -14.20 16 6 H -0.26 -11.42 6.52 99.48 0.65 -10.78 16 7 C -0.21 -10.82 9.11 84.03 0.77 -10.05 16 8 H 0.06 3.68 7.14 -2.91 -0.02 3.66 16 9 N -0.74 -31.66 4.34 -322.93 -1.40 -33.06 16 10 C 0.20 7.17 2.70 44.99 0.12 7.29 16 11 H 0.06 2.12 7.84 -2.39 -0.02 2.10 16 12 C 0.13 4.16 5.22 86.38 0.45 4.61 16 13 N -0.72 -22.85 5.39 -463.06 -2.49 -25.35 16 14 C 0.52 17.12 7.82 87.66 0.69 17.81 16 15 O -0.58 -22.85 16.03 -3.03 -0.05 -22.89 16 16 C -0.09 -2.52 5.56 29.10 0.16 -2.36 16 17 C -0.06 -1.78 4.38 -19.79 -0.09 -1.87 16 18 C -0.10 -2.32 9.56 22.03 0.21 -2.11 16 19 C -0.12 -2.15 9.96 22.05 0.22 -1.93 16 20 C -0.10 -1.70 9.78 22.31 0.22 -1.48 16 21 C -0.13 -2.77 5.74 -21.28 -0.12 -2.89 16 22 C -0.06 -0.92 9.90 22.50 0.22 -0.70 16 23 C -0.18 -2.60 10.03 22.15 0.22 -2.38 16 24 C 0.12 2.36 11.15 85.07 0.95 3.31 16 25 N -0.51 -14.19 9.52 -188.64 -1.79 -15.99 16 26 C 0.11 3.12 6.58 40.28 0.27 3.38 16 27 C -0.17 -5.62 5.36 -10.79 -0.06 -5.67 16 28 C -0.16 -4.63 10.18 30.62 0.31 -4.32 16 29 C -0.17 -6.18 9.78 30.62 0.30 -5.88 16 30 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 31 H 0.36 15.49 5.66 -92.70 -0.52 14.97 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.41 12.89 8.14 -92.71 -0.75 12.13 16 35 H 0.11 2.95 7.73 -2.39 -0.02 2.94 16 36 H 0.12 2.68 8.04 -2.39 -0.02 2.66 16 37 H 0.14 2.69 8.04 -2.91 -0.02 2.67 16 38 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 39 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 41 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 43 H 0.10 3.15 8.11 -2.39 -0.02 3.13 16 44 H 0.09 2.56 8.05 -2.39 -0.02 2.54 16 45 H 0.11 2.56 8.14 -2.39 -0.02 2.55 16 46 H 0.09 2.94 8.14 -2.38 -0.02 2.93 16 47 H 0.07 3.20 6.23 -2.39 -0.01 3.18 16 Total: -1.00 -75.51 392.15 1.43 -74.08 By element: Atomic # 1 Polarization: 46.15 SS G_CDS: -0.34 Total: 45.82 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 5.30 Total: -8.06 kcal Atomic # 7 Polarization: -129.64 SS G_CDS: -5.39 Total: -135.03 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.90 Total: 46.08 kcal Total: -75.51 1.43 -74.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661151529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.634 kcal (2) G-P(sol) polarization free energy of solvation -75.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds