Wall clock time and date at job start Sat Apr 11 2020 05:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00119 * 2 1 4 4 H 1.48498 * 109.47167 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47611 * 299.99910 * 3 2 1 6 6 H 1.48504 * 109.47094 * 59.99966 * 3 2 1 7 7 C 1.38810 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00218 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00017 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99690 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47178 * 324.99259 * 10 9 7 12 12 C 1.53005 * 109.46671 * 204.99791 * 10 9 7 13 13 N 1.46497 * 109.47238 * 55.00063 * 12 10 9 14 14 C 1.34776 * 119.99870 * 179.97438 * 13 12 10 15 15 O 1.21275 * 120.00323 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99699 * 179.97438 * 14 13 12 17 17 C 1.50703 * 109.46880 * 180.02562 * 16 14 13 18 18 C 1.36111 * 120.12653 * 265.00471 * 17 16 14 19 19 C 1.39312 * 121.06878 * 180.28105 * 18 17 16 20 20 C 1.36184 * 120.86393 * 359.48759 * 19 18 17 21 21 C 1.40385 * 119.61202 * 0.48635 * 20 19 18 22 22 C 1.40786 * 121.37477 * 179.75996 * 21 20 19 23 23 C 1.36566 * 118.14760 * 180.02562 * 22 21 20 24 24 C 1.39343 * 119.94201 * 359.97438 * 23 22 21 25 25 N 1.31083 * 121.74892 * 0.02562 * 24 23 22 26 26 C 1.33681 * 121.32533 * 359.95877 * 25 24 23 27 27 C 1.52997 * 109.47593 * 84.99872 * 10 9 7 28 28 C 1.53006 * 117.49797 * 8.74423 * 27 10 9 29 29 C 1.52999 * 117.49819 * 300.08734 * 27 10 9 30 30 H 0.96999 * 119.99545 * 0.02562 * 1 2 3 31 31 H 0.96994 * 119.99984 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47101 * 294.99870 * 12 10 9 33 33 H 1.09007 * 109.47001 * 175.00100 * 12 10 9 34 34 H 0.96997 * 120.00040 * 359.97438 * 13 12 10 35 35 H 1.09001 * 109.47006 * 60.00324 * 16 14 13 36 36 H 1.09002 * 109.47130 * 300.00134 * 16 14 13 37 37 H 1.08002 * 119.46321 * 359.97438 * 18 17 16 38 38 H 1.07996 * 119.56904 * 179.71937 * 19 18 17 39 39 H 1.07998 * 120.19145 * 180.26367 * 20 19 18 40 40 H 1.07995 * 120.92334 * 359.97438 * 22 21 20 41 41 H 1.08007 * 120.03264 * 179.97438 * 23 22 21 42 42 H 1.07996 * 119.12285 * 179.97438 * 24 23 22 43 43 H 1.09001 * 115.55542 * 154.41231 * 27 10 9 44 44 H 1.09006 * 117.49409 * 359.97438 * 28 27 10 45 45 H 1.08991 * 117.49881 * 145.02056 * 28 27 10 46 46 H 1.09000 * 117.49944 * 214.97807 * 29 27 10 47 47 H 1.09000 * 117.49875 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9691 -3.5508 -0.5872 12 6 1.1812 -4.7524 -0.6081 13 7 0.7356 -4.3363 -1.9402 14 6 -0.0529 -5.1489 -2.6713 15 8 -0.3939 -6.2243 -2.2263 16 6 -0.5118 -4.7206 -4.0414 17 6 -1.3753 -5.7998 -4.6421 18 6 -0.8283 -6.7292 -5.4725 19 6 -1.6093 -7.7318 -6.0432 20 6 -2.9422 -7.8158 -5.7769 21 6 -3.5400 -6.8741 -4.9244 22 6 -4.9154 -6.9230 -4.6279 23 6 -5.4281 -5.9735 -3.7908 24 6 -4.5938 -4.9936 -3.2566 25 7 -3.3136 -4.9511 -3.5349 26 6 -2.7485 -5.8505 -4.3466 27 6 2.4209 -4.0350 1.4391 28 6 1.8115 -3.1975 2.5652 29 6 3.2978 -3.0593 2.2264 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 0.3132 -4.9200 0.0295 33 1 1.7562 -5.6749 -0.6890 34 1 1.0080 -3.4761 -2.2960 35 1 0.3561 -4.5522 -4.6791 36 1 -1.0873 -3.7985 -3.9601 37 1 0.2273 -6.6857 -5.6966 38 1 -1.1510 -8.4541 -6.7023 39 1 -3.5366 -8.6001 -6.2219 40 1 -5.5475 -7.6895 -5.0512 41 1 -6.4793 -5.9821 -3.5430 42 1 -5.0133 -4.2490 -2.5964 43 1 2.5620 -5.0999 1.6237 44 1 1.1524 -2.3768 2.2820 45 1 1.5520 -3.7114 3.4907 46 1 4.0156 -3.4823 2.9292 47 1 3.6165 -2.1481 1.7202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661151530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:39 Heat of formation + Delta-G solvation = 55.223281 kcal Electronic energy + Delta-G solvation = -28632.652729 eV Core-core repulsion = 24781.279619 eV Total energy + Delta-G solvation = -3851.373110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.96416 -39.20192 -37.62930 -37.08777 -34.43777 -34.02385 -33.19296 -31.50268 -30.71660 -30.58673 -28.53495 -27.06216 -24.27587 -23.67298 -23.61299 -22.68552 -21.54616 -21.13917 -19.91144 -18.96767 -18.33130 -17.36720 -17.00958 -16.84919 -16.53689 -15.53521 -15.24507 -14.93250 -14.67826 -14.53790 -14.32244 -14.13107 -14.03094 -13.57812 -13.51169 -13.11723 -12.98856 -12.88632 -12.80576 -12.19776 -11.77169 -11.73406 -11.63884 -11.30612 -11.15925 -11.13488 -10.87982 -10.82564 -10.53080 -10.49490 -10.07454 -9.68155 -9.55750 -9.45445 -9.36988 -9.12894 -8.96352 -8.80724 -8.50054 -8.20594 -7.04055 -5.81315 -3.11411 0.33704 0.79449 1.93184 2.87730 3.11610 3.39558 3.46164 3.48101 3.70461 4.12815 4.29912 4.43717 4.51668 4.65867 4.66303 4.70278 4.81139 4.98650 5.06666 5.25053 5.26736 5.37348 5.41211 5.42998 5.50759 5.62074 5.64182 5.77431 5.77553 5.87916 5.92467 5.95322 6.01770 6.04725 6.10546 6.14418 6.30771 6.38906 6.40475 6.47380 6.52030 6.68400 6.80299 6.81666 6.97894 7.06148 7.30236 7.67744 7.95081 8.06718 8.35636 8.72209 9.48044 10.02541 10.38926 11.40020 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013194 B = 0.002772 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.716123 B =10098.159140 C =10813.298165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.192 3.808 11 H 0.056 0.944 12 C 0.121 3.879 13 N -0.713 5.713 14 C 0.521 3.479 15 O -0.551 6.551 16 C -0.100 4.100 17 C -0.027 4.027 18 C -0.099 4.099 19 C -0.110 4.110 20 C -0.105 4.105 21 C -0.103 4.103 22 C -0.062 4.062 23 C -0.176 4.176 24 C 0.130 3.870 25 N -0.460 5.460 26 C 0.141 3.859 27 C -0.177 4.177 28 C -0.163 4.163 29 C -0.176 4.176 30 H 0.255 0.745 31 H 0.387 0.613 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.410 0.590 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.159 0.841 43 H 0.085 0.915 44 H 0.119 0.881 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.952 -14.298 -11.270 19.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.205 4.205 3 Si 0.733 3.267 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.082 3.918 11 H 0.074 0.926 12 C -0.003 4.003 13 N -0.365 5.365 14 C 0.307 3.693 15 O -0.429 6.429 16 C -0.140 4.140 17 C -0.028 4.028 18 C -0.119 4.119 19 C -0.128 4.128 20 C -0.123 4.123 21 C -0.105 4.105 22 C -0.089 4.089 23 C -0.196 4.196 24 C -0.043 4.043 25 N -0.167 5.167 26 C 0.020 3.980 27 C -0.199 4.199 28 C -0.200 4.200 29 C -0.213 4.213 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.246 0.754 35 H 0.118 0.882 36 H 0.132 0.868 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.176 0.824 43 H 0.103 0.897 44 H 0.137 0.863 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.429 -14.276 -10.637 18.613 hybrid contribution -0.317 0.676 -0.230 0.781 sum -5.746 -13.600 -10.868 18.332 Atomic orbital electron populations 1.69674 1.04981 1.25553 1.57170 1.24708 0.95404 0.97499 1.02846 0.86211 0.78839 0.84512 0.77155 1.20629 1.21966 1.21972 1.19203 0.90890 0.83821 1.43086 0.91070 1.42484 1.05893 0.99454 1.88041 1.19983 0.94068 0.86134 0.91641 0.92592 1.21527 0.98593 0.97188 0.83013 1.45930 1.50977 1.21824 1.17778 1.20226 0.78018 0.84440 0.86584 1.90661 1.56625 1.23012 1.72589 1.20576 0.99792 0.99173 0.94470 1.19007 0.91327 0.96426 0.96068 1.20759 1.00121 0.94032 0.96943 1.20844 0.93947 0.98287 0.99765 1.20911 0.95440 0.98142 0.97854 1.18803 0.94505 0.97349 0.99800 1.21411 0.93684 0.97817 0.95940 1.21890 1.01604 0.96731 0.99392 1.23020 0.88901 0.96364 0.96025 1.68045 1.12446 1.24279 1.11976 1.18655 0.93673 0.91603 0.94081 1.23077 1.05920 0.95276 0.95641 1.22911 0.96678 1.03542 0.96878 1.22849 0.93474 1.01908 1.03039 0.93533 0.77853 0.91927 0.92133 0.75419 0.88245 0.86776 0.85377 0.85579 0.85512 0.84667 0.84686 0.82365 0.89712 0.86331 0.91339 0.91076 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.33 13.06 55.49 0.72 -25.60 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 21.39 29.55 -169.99 -5.02 16.36 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.24 -5.97 8.15 -15.06 -0.12 -6.10 16 8 H 0.07 1.77 6.91 -52.48 -0.36 1.40 16 9 N -0.72 -16.11 3.08 -53.42 -0.16 -16.27 16 10 C 0.19 3.60 2.86 -67.93 -0.19 3.41 16 11 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 12 C 0.12 2.14 5.22 -4.04 -0.02 2.12 16 13 N -0.71 -12.20 5.39 -60.29 -0.32 -12.53 16 14 C 0.52 9.06 7.82 -10.98 -0.09 8.98 16 15 O -0.55 -11.36 16.03 5.56 0.09 -11.27 16 16 C -0.10 -1.43 5.56 -29.03 -0.16 -1.59 16 17 C -0.03 -0.39 4.38 -104.51 -0.46 -0.85 16 18 C -0.10 -1.17 9.57 -39.95 -0.38 -1.55 16 19 C -0.11 -1.13 9.96 -39.92 -0.40 -1.52 16 20 C -0.10 -1.09 9.78 -39.51 -0.39 -1.48 16 21 C -0.10 -1.30 5.74 -106.80 -0.61 -1.92 16 22 C -0.06 -0.64 9.90 -39.22 -0.39 -1.03 16 23 C -0.18 -1.78 10.03 -39.77 -0.40 -2.18 16 24 C 0.13 1.65 11.15 -17.46 -0.19 1.45 16 25 N -0.46 -7.32 9.51 -10.98 -0.10 -7.43 16 26 C 0.14 2.16 6.58 -84.86 -0.56 1.60 16 27 C -0.18 -3.16 5.71 -90.62 -0.52 -3.68 16 28 C -0.16 -3.11 9.74 -26.69 -0.26 -3.37 16 29 C -0.18 -3.18 9.87 -26.69 -0.26 -3.44 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.39 9.64 7.80 -40.82 -0.32 9.33 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 34 H 0.41 6.96 8.14 -40.82 -0.33 6.63 16 35 H 0.10 1.10 8.04 -51.93 -0.42 0.68 16 36 H 0.11 1.70 7.71 -51.93 -0.40 1.29 16 37 H 0.13 1.23 8.04 -52.49 -0.42 0.81 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 42 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 44 H 0.12 2.70 6.68 -51.93 -0.35 2.36 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.10 2.06 6.22 -51.93 -0.32 1.74 16 LS Contribution 392.34 15.07 5.91 5.91 Total: -1.00 -31.98 392.34 -11.09 -43.08 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: -6.70 Total: 19.21 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -5.50 Total: -11.47 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: 0.13 Total: -61.83 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.98 -11.09 -43.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661151530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.299 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds