Wall clock time and date at job start Sat Apr 11 2020 05:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 119.99846 * 2 1 4 4 H 1.48502 * 109.47497 * 239.99935 * 3 2 1 5 5 H 1.48507 * 109.47436 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47288 * 119.99998 * 3 2 1 7 7 C 1.38814 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99542 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99680 * 0.02562 * 7 2 1 10 10 C 1.47420 * 125.65387 * 0.04119 * 9 7 2 11 11 C 1.55127 * 104.94564 * 203.97148 * 10 9 7 12 12 C 1.55155 * 101.48270 * 323.21593 * 11 10 9 13 13 H 1.08992 * 110.72571 * 276.83325 * 12 11 10 14 14 C 1.53002 * 110.71657 * 153.73329 * 12 11 10 15 15 C 1.53004 * 109.47088 * 177.44533 * 14 12 11 16 16 N 1.46499 * 109.47117 * 180.02562 * 15 14 12 17 17 C 1.34777 * 119.99624 * 180.02562 * 16 15 14 18 18 O 1.21538 * 120.00510 * 359.97438 * 17 16 15 19 19 C 1.47907 * 119.99710 * 179.97438 * 17 16 15 20 20 C 1.38889 * 121.11109 * 354.14493 * 19 17 16 21 21 C 1.39281 * 119.57905 * 180.02562 * 20 19 17 22 22 N 1.30995 * 121.88205 * 0.02562 * 21 20 19 23 23 C 1.33539 * 121.82506 * 359.97438 * 22 21 20 24 24 C 1.40712 * 120.96629 * 179.97438 * 23 22 21 25 25 C 1.36055 * 119.74280 * 180.02562 * 24 23 22 26 26 C 1.39359 * 121.05151 * 0.02562 * 25 24 23 27 27 C 1.36250 * 120.83912 * 359.97438 * 26 25 24 28 28 C 1.40098 * 119.64248 * 359.72311 * 27 26 25 29 29 C 1.47027 * 125.64872 * 179.97438 * 9 7 2 30 30 H 0.96998 * 120.00166 * 0.02562 * 1 2 3 31 31 H 1.09006 * 110.36896 * 322.93256 * 10 9 7 32 32 H 1.08997 * 110.37087 * 85.14608 * 10 9 7 33 33 H 1.09004 * 111.16201 * 205.13041 * 11 10 9 34 34 H 1.08993 * 110.93796 * 81.21219 * 11 10 9 35 35 H 1.08999 * 109.47305 * 57.44524 * 14 12 11 36 36 H 1.08996 * 109.47053 * 297.44214 * 14 12 11 37 37 H 1.09005 * 109.46551 * 300.00213 * 15 14 12 38 38 H 1.08999 * 109.47054 * 59.99838 * 15 14 12 39 39 H 0.96997 * 120.00171 * 359.97438 * 16 15 14 40 40 H 1.07998 * 120.21396 * 359.97438 * 20 19 17 41 41 H 1.08001 * 119.05672 * 180.02562 * 21 20 19 42 42 H 1.08003 * 120.13607 * 0.03468 * 24 23 22 43 43 H 1.07996 * 119.48186 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.57748 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.17778 * 180.02562 * 27 26 25 46 46 H 1.09003 * 109.87883 * 59.55490 * 29 9 7 47 47 H 1.09003 * 110.01200 * 298.46952 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5332 -0.0009 11 6 -0.4053 -3.9351 0.6086 12 6 0.7784 -4.7524 0.0272 13 1 0.5490 -5.1005 -0.9799 14 6 1.1223 -5.9311 0.9401 15 6 2.2484 -6.7529 0.3095 16 7 2.5773 -7.8819 1.1833 17 6 3.5475 -8.7477 0.8291 18 8 4.1493 -8.5923 -0.2154 19 6 3.8800 -9.8872 1.7115 20 6 3.2936 -10.0203 2.9635 21 6 3.6304 -11.1058 3.7686 22 7 4.4907 -12.0143 3.3807 23 6 5.0932 -11.9510 2.1906 24 6 6.0151 -12.9368 1.7925 25 6 6.6149 -12.8474 0.5746 26 6 6.3321 -11.7919 -0.2903 27 6 5.4450 -10.8193 0.0613 28 6 4.8040 -10.8830 1.3054 29 6 1.9318 -3.7275 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6000 -1.7587 0.6142 32 1 -0.5265 -2.4851 -1.0194 33 1 -1.3607 -4.3373 0.2715 34 1 -0.3596 -3.9015 1.6971 35 1 0.2415 -6.5603 1.0685 36 1 1.4459 -5.5563 1.9110 37 1 1.9248 -7.1276 -0.6616 38 1 3.1292 -6.1238 0.1810 39 1 2.0974 -8.0058 2.0170 40 1 2.5816 -9.2863 3.3109 41 1 3.1690 -11.2012 4.7404 42 1 6.2455 -13.7612 2.4510 43 1 7.3220 -13.6061 0.2734 44 1 6.8223 -11.7443 -1.2514 45 1 5.2335 -10.0063 -0.6174 46 1 2.5578 -3.8510 0.8843 47 1 2.5304 -3.8660 -0.8998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664726885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:49 Heat of formation + Delta-G solvation = 46.200527 kcal Electronic energy + Delta-G solvation = -27749.292607 eV Core-core repulsion = 23897.528241 eV Total energy + Delta-G solvation = -3851.764366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.45152 -39.62352 -37.85533 -37.45639 -35.44787 -33.88253 -33.06672 -31.14396 -30.87141 -30.17628 -28.98391 -26.84660 -25.43572 -24.55832 -23.93370 -23.12671 -22.14368 -21.11713 -20.13272 -19.43649 -18.49470 -17.92690 -17.69575 -16.89338 -16.10179 -15.94041 -15.76219 -15.21325 -15.09651 -14.81217 -14.65762 -14.49728 -14.24732 -13.73853 -13.65402 -13.52274 -13.41422 -12.56709 -12.32748 -12.15085 -12.04977 -11.93310 -11.76574 -11.71099 -11.61004 -11.12629 -10.93269 -10.84324 -10.75762 -10.63754 -10.19115 -10.06619 -9.97136 -9.77428 -9.60758 -9.46295 -9.33297 -9.18513 -8.63942 -8.60787 -6.81869 -5.64444 -3.05899 -0.28137 0.40658 1.37636 2.42902 2.74621 2.81729 3.40879 3.44971 3.46317 3.77061 3.85254 4.12798 4.22391 4.34274 4.47267 4.49832 4.71916 4.80376 4.89128 4.96530 5.02782 5.14604 5.21076 5.23515 5.37782 5.47335 5.54844 5.58207 5.64529 5.69998 5.75089 5.83384 5.96168 5.97034 6.04995 6.14196 6.16825 6.21116 6.30678 6.36354 6.52170 6.58835 6.61550 6.75109 6.95738 7.14765 7.45132 7.52747 7.63736 7.85539 7.86480 8.37638 9.23484 9.84535 10.49760 11.39377 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.001867 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.264791 B =14994.483478 C =15485.834895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.222 4.222 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.139 4.139 12 C -0.097 4.097 13 H 0.072 0.928 14 C -0.117 4.117 15 C 0.116 3.884 16 N -0.716 5.716 17 C 0.557 3.443 18 O -0.524 6.524 19 C -0.068 4.068 20 C -0.140 4.140 21 C 0.125 3.875 22 N -0.459 5.459 23 C 0.123 3.877 24 C -0.100 4.100 25 C -0.097 4.097 26 C -0.118 4.118 27 C -0.100 4.100 28 C -0.066 4.066 29 C 0.139 3.861 30 H 0.252 0.748 31 H 0.106 0.894 32 H 0.010 0.990 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.400 0.600 40 H 0.144 0.856 41 H 0.167 0.833 42 H 0.136 0.864 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.170 0.830 46 H 0.022 0.978 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.963 -26.571 5.762 27.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.026 3.974 11 C -0.177 4.177 12 C -0.117 4.117 13 H 0.091 0.909 14 C -0.155 4.155 15 C -0.007 4.007 16 N -0.367 5.367 17 C 0.344 3.656 18 O -0.401 6.401 19 C -0.080 4.080 20 C -0.160 4.160 21 C -0.047 4.047 22 N -0.167 5.167 23 C 0.002 3.998 24 C -0.119 4.119 25 C -0.117 4.117 26 C -0.136 4.136 27 C -0.118 4.118 28 C -0.069 4.069 29 C 0.013 3.987 30 H 0.063 0.937 31 H 0.123 0.877 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.236 0.764 40 H 0.161 0.839 41 H 0.184 0.816 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.187 0.813 46 H 0.040 0.960 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 6.614 -26.928 5.467 28.262 hybrid contribution 0.002 1.465 -0.105 1.469 sum 6.616 -25.463 5.363 26.849 Atomic orbital electron populations 1.69788 1.04875 1.24831 1.57715 1.24790 0.95745 0.97723 1.02547 0.86151 0.78395 0.83041 0.77904 1.21217 1.21573 1.21186 1.19040 0.90479 0.82549 1.42965 0.90599 1.44499 1.01991 0.99788 1.86805 1.21960 0.84682 0.92588 0.98160 1.23075 0.95809 0.98887 0.99974 1.22091 0.97591 0.93709 0.98299 0.90915 1.21808 0.97024 0.96790 0.99903 1.21623 0.99302 0.86328 0.93416 1.46002 1.37471 1.28017 1.25213 1.18048 0.80183 0.81885 0.85516 1.90616 1.51089 1.73823 1.24599 1.20396 0.97282 0.95259 0.95017 1.22456 0.99965 0.99709 0.93916 1.22924 0.93128 0.89090 0.99530 1.67809 1.07040 1.26701 1.15157 1.18899 0.96772 0.94303 0.89853 1.20787 0.95974 0.98174 0.96916 1.21022 0.98849 0.98149 0.93631 1.21143 0.98176 0.94187 1.00089 1.22092 0.94247 0.99824 0.95681 1.18681 0.97237 0.94683 0.96260 1.21366 0.93646 0.85964 0.97682 0.93723 0.87672 0.97159 0.92438 0.92196 0.91514 0.91050 0.91017 0.90463 0.76429 0.83879 0.81601 0.84570 0.85169 0.85237 0.81333 0.96022 0.96269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.97 10.09 55.49 0.56 -26.41 16 2 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.22 -6.24 10.27 -15.06 -0.15 -6.40 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.53 3.40 -169.93 -0.58 -16.11 16 10 C 0.15 3.63 5.89 -2.41 -0.01 3.62 16 11 C -0.14 -2.49 6.55 -24.47 -0.16 -2.65 16 12 C -0.10 -1.57 2.95 -88.79 -0.26 -1.83 16 13 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 14 C -0.12 -1.38 4.72 -26.73 -0.13 -1.51 16 15 C 0.12 1.36 5.54 -4.04 -0.02 1.34 16 16 N -0.72 -7.05 5.51 -61.23 -0.34 -7.39 16 17 C 0.56 6.61 7.75 -12.30 -0.10 6.52 16 18 O -0.52 -7.77 13.53 5.33 0.07 -7.70 16 19 C -0.07 -0.72 5.94 -104.34 -0.62 -1.34 16 20 C -0.14 -1.05 9.60 -38.95 -0.37 -1.42 16 21 C 0.13 0.96 11.14 -17.52 -0.20 0.77 16 22 N -0.46 -4.72 10.30 -11.00 -0.11 -4.84 16 23 C 0.12 1.35 6.61 -84.87 -0.56 0.79 16 24 C -0.10 -0.90 9.98 -39.43 -0.39 -1.29 16 25 C -0.10 -0.75 9.94 -39.95 -0.40 -1.14 16 26 C -0.12 -1.04 9.96 -39.88 -0.40 -1.44 16 27 C -0.10 -1.12 9.25 -39.60 -0.37 -1.49 16 28 C -0.07 -0.76 5.76 -106.52 -0.61 -1.37 16 29 C 0.14 2.85 6.11 -3.06 -0.02 2.83 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.11 2.85 5.87 -51.93 -0.30 2.55 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.85 8.00 -51.93 -0.42 0.43 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.05 7.58 -51.93 -0.39 0.66 16 39 H 0.40 2.73 6.65 -40.82 -0.27 2.45 16 40 H 0.14 0.60 6.55 -52.49 -0.34 0.25 16 41 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 43 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.17 2.11 4.98 -52.49 -0.26 1.85 16 46 H 0.02 0.44 7.73 -51.93 -0.40 0.04 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 379.78 15.07 5.72 5.72 Total: -1.00 -33.91 379.78 -11.15 -45.05 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.58 Total: 0.97 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -4.87 Total: -6.47 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.47 Total: -54.74 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.07 Total: -7.70 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.91 -11.15 -45.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664726885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.255 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds