Wall clock time and date at job start Sat Apr 11 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 119.99846 * 2 1 4 4 H 1.48502 * 109.47497 * 239.99935 * 3 2 1 5 5 H 1.48507 * 109.47436 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47288 * 119.99998 * 3 2 1 7 7 C 1.38814 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99542 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99680 * 0.02562 * 7 2 1 10 10 C 1.47420 * 125.65387 * 0.04119 * 9 7 2 11 11 C 1.55127 * 104.94564 * 203.97148 * 10 9 7 12 12 C 1.55155 * 101.48270 * 323.21593 * 11 10 9 13 13 H 1.08992 * 110.72571 * 276.83325 * 12 11 10 14 14 C 1.53002 * 110.71657 * 153.73329 * 12 11 10 15 15 C 1.53004 * 109.47088 * 177.44533 * 14 12 11 16 16 N 1.46499 * 109.47117 * 180.02562 * 15 14 12 17 17 C 1.34777 * 119.99624 * 180.02562 * 16 15 14 18 18 O 1.21538 * 120.00510 * 359.97438 * 17 16 15 19 19 C 1.47907 * 119.99710 * 179.97438 * 17 16 15 20 20 C 1.38889 * 121.11109 * 354.14493 * 19 17 16 21 21 C 1.39281 * 119.57905 * 180.02562 * 20 19 17 22 22 N 1.30995 * 121.88205 * 0.02562 * 21 20 19 23 23 C 1.33539 * 121.82506 * 359.97438 * 22 21 20 24 24 C 1.40712 * 120.96629 * 179.97438 * 23 22 21 25 25 C 1.36055 * 119.74280 * 180.02562 * 24 23 22 26 26 C 1.39359 * 121.05151 * 0.02562 * 25 24 23 27 27 C 1.36250 * 120.83912 * 359.97438 * 26 25 24 28 28 C 1.40098 * 119.64248 * 359.72311 * 27 26 25 29 29 C 1.47027 * 125.64872 * 179.97438 * 9 7 2 30 30 H 0.96998 * 120.00166 * 0.02562 * 1 2 3 31 31 H 1.09006 * 110.36896 * 322.93256 * 10 9 7 32 32 H 1.08997 * 110.37087 * 85.14608 * 10 9 7 33 33 H 1.09004 * 111.16201 * 205.13041 * 11 10 9 34 34 H 1.08993 * 110.93796 * 81.21219 * 11 10 9 35 35 H 1.08999 * 109.47305 * 57.44524 * 14 12 11 36 36 H 1.08996 * 109.47053 * 297.44214 * 14 12 11 37 37 H 1.09005 * 109.46551 * 300.00213 * 15 14 12 38 38 H 1.08999 * 109.47054 * 59.99838 * 15 14 12 39 39 H 0.96997 * 120.00171 * 359.97438 * 16 15 14 40 40 H 1.07998 * 120.21396 * 359.97438 * 20 19 17 41 41 H 1.08001 * 119.05672 * 180.02562 * 21 20 19 42 42 H 1.08003 * 120.13607 * 0.03468 * 24 23 22 43 43 H 1.07996 * 119.48186 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.57748 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.17778 * 180.02562 * 27 26 25 46 46 H 1.09003 * 109.87883 * 59.55490 * 29 9 7 47 47 H 1.09003 * 110.01200 * 298.46952 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5332 -0.0009 11 6 -0.4053 -3.9351 0.6086 12 6 0.7784 -4.7524 0.0272 13 1 0.5490 -5.1005 -0.9799 14 6 1.1223 -5.9311 0.9401 15 6 2.2484 -6.7529 0.3095 16 7 2.5773 -7.8819 1.1833 17 6 3.5475 -8.7477 0.8291 18 8 4.1493 -8.5923 -0.2154 19 6 3.8800 -9.8872 1.7115 20 6 3.2936 -10.0203 2.9635 21 6 3.6304 -11.1058 3.7686 22 7 4.4907 -12.0143 3.3807 23 6 5.0932 -11.9510 2.1906 24 6 6.0151 -12.9368 1.7925 25 6 6.6149 -12.8474 0.5746 26 6 6.3321 -11.7919 -0.2903 27 6 5.4450 -10.8193 0.0613 28 6 4.8040 -10.8830 1.3054 29 6 1.9318 -3.7275 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6000 -1.7587 0.6142 32 1 -0.5265 -2.4851 -1.0194 33 1 -1.3607 -4.3373 0.2715 34 1 -0.3596 -3.9015 1.6971 35 1 0.2415 -6.5603 1.0685 36 1 1.4459 -5.5563 1.9110 37 1 1.9248 -7.1276 -0.6616 38 1 3.1292 -6.1238 0.1810 39 1 2.0974 -8.0058 2.0170 40 1 2.5816 -9.2863 3.3109 41 1 3.1690 -11.2012 4.7404 42 1 6.2455 -13.7612 2.4510 43 1 7.3220 -13.6061 0.2734 44 1 6.8223 -11.7443 -1.2514 45 1 5.2335 -10.0063 -0.6174 46 1 2.5578 -3.8510 0.8843 47 1 2.5304 -3.8660 -0.8998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664726885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:48 Heat of formation + Delta-G solvation = 24.923813 kcal Electronic energy + Delta-G solvation = -27750.215235 eV Core-core repulsion = 23897.528241 eV Total energy + Delta-G solvation = -3852.686994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.16076 -40.49505 -39.38063 -38.10461 -36.58629 -34.91178 -34.45187 -32.56944 -31.55287 -31.14330 -30.51946 -28.26569 -26.81547 -25.79595 -24.59103 -24.08723 -23.19081 -22.04188 -21.87181 -20.76528 -19.20211 -18.89759 -18.64132 -18.36996 -17.14846 -16.97174 -16.67363 -16.50911 -16.29931 -15.79440 -15.63252 -15.44396 -15.39878 -14.84909 -14.76461 -14.28244 -14.26589 -14.12452 -13.78957 -13.50739 -13.33300 -13.12246 -12.82608 -12.80622 -12.68002 -12.63932 -12.33979 -12.24800 -12.03867 -11.77682 -11.60364 -11.57276 -11.43549 -11.36182 -11.20264 -10.73715 -10.36436 -10.24126 -9.82195 -9.30951 -8.87392 -7.77575 -5.21762 -0.97003 -0.23607 0.64773 1.44940 1.48098 1.54583 1.71082 1.90471 2.07056 2.49180 3.07789 3.27383 3.30972 3.42106 3.61987 3.66609 3.74562 3.76576 3.85239 3.94408 4.15281 4.18124 4.20734 4.31381 4.35466 4.40408 4.53815 4.56928 4.64450 4.71688 4.74466 4.76448 4.89072 4.98899 5.04224 5.08286 5.13745 5.20244 5.26854 5.33457 5.33819 5.44007 5.48029 5.52407 5.55774 5.70237 5.84457 5.86799 6.32959 6.37588 6.80054 7.04573 7.11823 7.80155 8.43640 9.23685 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.001867 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.264791 B =14994.483478 C =15485.834895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.069 4.069 3 Si 0.980 3.020 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.241 4.241 8 H 0.076 0.924 9 N -0.629 5.629 10 C 0.148 3.852 11 C -0.121 4.121 12 C -0.084 4.084 13 H 0.078 0.922 14 C -0.101 4.101 15 C 0.122 3.878 16 N -0.701 5.701 17 C 0.555 3.445 18 O -0.563 6.563 19 C -0.094 4.094 20 C -0.118 4.118 21 C 0.125 3.875 22 N -0.477 5.477 23 C 0.100 3.900 24 C -0.107 4.107 25 C -0.094 4.094 26 C -0.115 4.115 27 C -0.131 4.131 28 C -0.087 4.087 29 C 0.133 3.867 30 H 0.247 0.753 31 H 0.071 0.929 32 H -0.018 1.018 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.418 0.582 40 H 0.181 0.819 41 H 0.206 0.794 42 H 0.152 0.848 43 H 0.163 0.837 44 H 0.148 0.852 45 H 0.149 0.851 46 H 0.027 0.973 47 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.832 -28.638 7.668 30.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.371 4.371 8 H 0.094 0.906 9 N -0.355 5.355 10 C 0.023 3.977 11 C -0.160 4.160 12 C -0.103 4.103 13 H 0.097 0.903 14 C -0.139 4.139 15 C -0.001 4.001 16 N -0.353 5.353 17 C 0.343 3.657 18 O -0.443 6.443 19 C -0.106 4.106 20 C -0.139 4.139 21 C -0.047 4.047 22 N -0.185 5.185 23 C -0.021 4.021 24 C -0.125 4.125 25 C -0.114 4.114 26 C -0.133 4.133 27 C -0.149 4.149 28 C -0.089 4.089 29 C 0.008 3.992 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.000 1.000 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.257 0.743 40 H 0.199 0.801 41 H 0.223 0.777 42 H 0.170 0.830 43 H 0.181 0.819 44 H 0.166 0.834 45 H 0.166 0.834 46 H 0.045 0.955 47 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 6.482 -29.031 7.398 30.652 hybrid contribution 0.058 2.082 -0.689 2.194 sum 6.540 -26.948 6.709 28.531 Atomic orbital electron populations 1.70051 1.06105 1.25059 1.58550 1.25638 0.96710 1.00965 1.02798 0.85135 0.77152 0.78800 0.78138 1.20719 1.21714 1.20185 1.19405 0.90901 0.84096 1.42652 0.90607 1.44849 1.02965 1.00993 1.86700 1.21809 0.83878 0.95678 0.96342 1.22911 0.97884 0.94973 1.00189 1.22003 0.94704 0.93844 0.99781 0.90333 1.21650 0.98252 0.95255 0.98702 1.21396 0.98371 0.86545 0.93779 1.45770 1.37026 1.26905 1.25564 1.18333 0.79918 0.82262 0.85209 1.90609 1.52524 1.74828 1.26371 1.20369 0.98793 0.95105 0.96295 1.22879 0.98926 0.99895 0.92167 1.23641 0.92106 0.88203 1.00791 1.67862 1.07907 1.27817 1.14937 1.19180 0.97796 0.94806 0.90271 1.21104 0.95569 0.98217 0.97624 1.21347 0.98893 0.98250 0.92897 1.21434 0.97130 0.93691 1.01000 1.22026 0.96248 1.00551 0.96069 1.18884 0.97958 0.95529 0.96574 1.21585 0.95320 0.85052 0.97264 0.94321 0.91092 1.00049 0.89514 0.91213 0.88057 0.90382 0.91458 0.92844 0.74339 0.80130 0.77725 0.83012 0.81909 0.83414 0.83383 0.95529 0.97184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.02 10.09 21.65 0.22 -56.80 16 2 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16 3 Si 0.98 46.32 29.55 68.60 2.03 48.35 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.24 -13.87 10.27 84.04 0.86 -13.01 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.63 -32.91 3.40 -691.54 -2.35 -35.26 16 10 C 0.15 7.26 5.89 86.93 0.51 7.77 16 11 C -0.12 -4.10 6.55 32.06 0.21 -3.89 16 12 C -0.08 -2.53 2.95 -9.61 -0.03 -2.56 16 13 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 14 C -0.10 -2.03 4.72 30.60 0.14 -1.88 16 15 C 0.12 2.67 5.54 86.38 0.48 3.15 16 16 N -0.70 -12.35 5.51 -465.91 -2.57 -14.91 16 17 C 0.56 12.99 7.75 86.80 0.67 13.66 16 18 O -0.56 -17.46 13.53 -3.84 -0.05 -17.52 16 19 C -0.09 -1.91 5.94 -19.68 -0.12 -2.03 16 20 C -0.12 -1.44 9.60 22.68 0.22 -1.22 16 21 C 0.12 1.54 11.14 85.07 0.95 2.49 16 22 N -0.48 -9.01 10.30 -188.72 -1.94 -10.95 16 23 C 0.10 2.13 6.61 40.34 0.27 2.39 16 24 C -0.11 -1.80 9.98 22.37 0.22 -1.58 16 25 C -0.09 -1.33 9.94 22.03 0.22 -1.11 16 26 C -0.11 -2.01 9.96 22.08 0.22 -1.79 16 27 C -0.13 -3.08 9.25 22.26 0.21 -2.87 16 28 C -0.09 -2.01 5.76 -21.10 -0.12 -2.14 16 29 C 0.13 5.42 6.11 86.73 0.53 5.95 16 30 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.07 3.98 5.87 -2.38 -0.01 3.96 16 32 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 33 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.07 2.25 8.05 -2.39 -0.02 2.23 16 35 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.54 8.00 -2.39 -0.02 1.52 16 37 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.05 1.44 7.58 -2.39 -0.02 1.42 16 39 H 0.42 4.12 6.65 -92.71 -0.62 3.51 16 40 H 0.18 0.66 6.55 -2.91 -0.02 0.64 16 41 H 0.21 0.77 8.06 -2.91 -0.02 0.75 16 42 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 43 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 44 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 45 H 0.15 4.07 4.98 -2.91 -0.01 4.06 16 46 H 0.03 1.06 7.73 -2.39 -0.02 1.04 16 47 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -78.99 379.78 1.62 -77.37 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.38 Total: 11.89 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 5.91 Total: -2.17 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -6.64 Total: -117.93 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.05 Total: -17.52 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -78.99 1.62 -77.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664726885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.293 kcal (2) G-P(sol) polarization free energy of solvation -78.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds