Wall clock time and date at job start Sat Apr 11 2020 05:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86805 * 119.99813 * 2 1 4 4 H 1.48499 * 109.47101 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47197 * 300.00026 * 3 2 1 6 6 H 1.48496 * 109.47048 * 60.00393 * 3 2 1 7 7 C 1.38817 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99886 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99814 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99680 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46978 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.05489 * 53.58286 * 11 10 9 13 13 C 1.54268 * 110.02818 * 292.16760 * 11 10 9 14 14 C 1.54894 * 104.19658 * 217.10395 * 13 11 10 15 15 C 1.54889 * 102.74492 * 37.94483 * 14 13 11 16 16 C 1.53870 * 110.03308 * 175.00369 * 11 10 9 17 17 H 1.09000 * 110.07104 * 238.59232 * 16 11 10 18 18 N 1.46499 * 110.03360 * 359.97438 * 16 11 10 19 19 C 1.34777 * 120.00195 * 203.62013 * 18 16 11 20 20 O 1.21563 * 119.99934 * 0.02562 * 19 18 16 21 21 C 1.47761 * 119.99669 * 180.27934 * 19 18 16 22 22 C 1.40590 * 120.26989 * 359.44534 * 21 19 18 23 23 N 1.30800 * 121.53575 * 179.76553 * 22 21 19 24 24 C 1.33824 * 121.71943 * 0.49785 * 23 22 21 25 25 C 1.40522 * 120.81159 * 179.73167 * 24 23 22 26 26 C 1.36131 * 119.81560 * 180.02562 * 25 24 23 27 27 C 1.39344 * 121.08293 * 0.04862 * 26 25 24 28 28 C 1.36136 * 120.84108 * 359.94371 * 27 26 25 29 29 C 1.40552 * 119.61768 * 0.03417 * 28 27 26 30 30 C 1.39020 * 120.26467 * 179.72990 * 21 19 18 31 31 H 0.96997 * 120.00364 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99807 * 0.02562 * 9 7 2 33 33 H 1.09003 * 109.47094 * 60.00680 * 10 9 7 34 34 H 1.09004 * 109.47335 * 300.00420 * 10 9 7 35 35 H 1.09000 * 110.48861 * 98.42853 * 13 11 10 36 36 H 1.08996 * 110.60218 * 335.83491 * 13 11 10 37 37 H 1.09001 * 110.75472 * 279.63621 * 14 13 11 38 38 H 1.08997 * 110.76051 * 156.25603 * 14 13 11 39 39 H 1.09000 * 110.48934 * 203.38390 * 15 14 13 40 40 H 1.09002 * 110.49051 * 80.73773 * 15 14 13 41 41 H 0.97000 * 120.00069 * 23.62741 * 18 16 11 42 42 H 1.08001 * 119.23248 * 0.02562 * 22 21 19 43 43 H 1.08000 * 120.09563 * 0.02628 * 25 24 23 44 44 H 1.08001 * 119.45880 * 180.02562 * 26 25 24 45 45 H 1.08002 * 119.57714 * 179.97438 * 27 26 25 46 46 H 1.07994 * 120.19440 * 180.02562 * 28 27 26 47 47 H 1.08006 * 121.01342 * 359.94766 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0639 -4.8197 -0.0021 12 1 0.3587 -4.7083 -0.8257 13 6 0.3054 -4.8669 1.3404 14 6 0.1428 -6.3794 1.6320 15 6 1.4882 -6.9687 1.1405 16 6 1.8160 -6.1561 -0.1292 17 1 1.4765 -6.6936 -1.0146 18 7 3.2585 -5.9142 -0.2123 19 6 4.0631 -6.8292 -0.7883 20 8 3.5918 -7.8551 -1.2392 21 6 5.5188 -6.5880 -0.8665 22 6 6.0690 -5.4007 -0.3525 23 7 7.3543 -5.1637 -0.4045 24 6 8.2082 -6.0331 -0.9575 25 6 9.5850 -5.7565 -1.0082 26 6 10.4355 -6.6552 -1.5759 27 6 9.9645 -7.8518 -2.1124 28 6 8.6378 -8.1558 -2.0823 29 6 7.7309 -7.2514 -1.5034 30 6 6.3546 -7.5305 -1.4544 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 2.6854 -3.7149 0.8879 34 1 2.6842 -3.7140 -0.8921 35 1 -0.6700 -4.3899 1.2445 36 1 0.8879 -4.3873 2.1271 37 1 -0.6907 -6.7946 1.0653 38 1 0.0111 -6.5551 2.6996 39 1 1.3762 -8.0256 0.8986 40 1 2.2638 -6.8290 1.8937 41 1 3.6345 -5.0956 0.1473 42 1 5.4157 -4.6692 0.0997 43 1 9.9674 -4.8336 -0.5979 44 1 11.4926 -6.4369 -1.6114 45 1 10.6608 -8.5471 -2.5575 46 1 8.2842 -9.0864 -2.5008 47 1 5.9582 -8.4495 -1.8606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667752272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:25 Heat of formation + Delta-G solvation = 8.253766 kcal Electronic energy + Delta-G solvation = -28511.450444 eV Core-core repulsion = 24658.040582 eV Total energy + Delta-G solvation = -3853.409861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.10451 -41.05360 -39.27554 -37.92422 -36.23027 -34.86977 -34.52931 -33.30163 -31.85218 -31.07735 -30.17838 -28.68040 -26.39732 -25.53105 -25.15302 -24.22648 -23.13155 -22.35433 -21.57158 -20.41679 -19.64026 -19.09163 -18.89979 -18.11421 -17.27264 -16.74441 -16.56003 -16.39272 -16.14139 -15.64363 -15.51053 -15.37227 -15.25252 -15.11330 -14.97055 -14.73203 -14.46446 -14.40351 -14.12811 -13.47885 -13.14134 -12.91157 -12.82496 -12.76861 -12.74059 -12.46270 -12.35010 -12.12645 -11.92563 -11.78970 -11.72483 -11.63451 -11.53581 -11.45330 -11.34047 -10.94152 -10.56944 -10.17952 -9.85524 -9.32765 -8.99194 -7.94688 -5.22922 -0.84802 -0.46807 0.81299 1.46962 1.47910 1.48318 1.58151 2.02402 2.18240 2.55952 3.02617 3.10010 3.38838 3.43993 3.52141 3.57554 3.65169 3.68253 3.76509 3.86546 3.94815 4.17919 4.19969 4.29435 4.38634 4.40561 4.49312 4.50373 4.54344 4.66520 4.68315 4.76150 4.77208 4.91301 4.91984 4.98550 5.03111 5.08226 5.23180 5.25552 5.32632 5.35778 5.38525 5.44211 5.49086 5.49373 5.53331 5.82533 6.27291 6.37945 6.72340 7.04035 7.34782 8.09809 8.32896 9.29016 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009502 B = 0.003071 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.117812 B = 9114.997602 C =11702.683187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.293 1.293 7 C -0.242 4.242 8 H 0.077 0.923 9 N -0.739 5.739 10 C 0.156 3.844 11 C -0.101 4.101 12 H 0.075 0.925 13 C -0.110 4.110 14 C -0.112 4.112 15 C -0.125 4.125 16 C 0.154 3.846 17 H 0.085 0.915 18 N -0.711 5.711 19 C 0.568 3.432 20 O -0.568 6.568 21 C -0.208 4.208 22 C 0.156 3.844 23 N -0.497 5.497 24 C 0.117 3.883 25 C -0.122 4.122 26 C -0.076 4.076 27 C -0.114 4.114 28 C -0.090 4.090 29 C -0.128 4.128 30 C 0.016 3.984 31 H 0.251 0.749 32 H 0.375 0.625 33 H 0.029 0.971 34 H 0.020 0.980 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.409 0.591 42 H 0.167 0.833 43 H 0.141 0.859 44 H 0.165 0.835 45 H 0.166 0.834 46 H 0.159 0.841 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.780 -20.791 -1.236 27.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.223 1.223 6 H -0.220 1.220 7 C -0.374 4.374 8 H 0.095 0.905 9 N -0.382 5.382 10 C 0.030 3.970 11 C -0.120 4.120 12 H 0.093 0.907 13 C -0.148 4.148 14 C -0.150 4.150 15 C -0.163 4.163 16 C 0.049 3.951 17 H 0.103 0.897 18 N -0.364 5.364 19 C 0.355 3.645 20 O -0.449 6.449 21 C -0.213 4.213 22 C -0.018 4.018 23 N -0.205 5.205 24 C -0.003 4.003 25 C -0.141 4.141 26 C -0.096 4.096 27 C -0.132 4.132 28 C -0.109 4.109 29 C -0.130 4.130 30 C -0.010 4.010 31 H 0.059 0.941 32 H 0.207 0.793 33 H 0.047 0.953 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.249 0.751 42 H 0.184 0.816 43 H 0.158 0.842 44 H 0.182 0.818 45 H 0.184 0.816 46 H 0.176 0.824 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 18.056 -20.631 -1.221 27.444 hybrid contribution -0.665 1.176 -0.172 1.362 sum 17.391 -19.455 -1.393 26.132 Atomic orbital electron populations 1.69806 1.06544 1.25928 1.59616 1.25510 0.96334 1.00937 1.03831 0.85140 0.78344 0.80127 0.76584 1.19047 1.22271 1.22045 1.19662 0.91547 0.85266 1.40876 0.90493 1.42503 1.05658 1.00848 1.89202 1.20846 0.93957 0.84809 0.97415 1.22120 0.97351 0.92955 0.99555 0.90697 1.22300 0.99786 0.97200 0.95519 1.22445 0.96877 0.93743 1.01954 1.22719 0.98156 0.99425 0.96019 1.21643 0.78569 0.95150 0.99736 0.89662 1.46313 1.08081 1.22494 1.59468 1.18127 0.86044 0.83086 0.77227 1.90730 1.76851 1.27806 1.49479 1.20873 0.94119 0.98718 1.07622 1.23182 0.91655 0.94053 0.92935 1.67973 1.03877 1.31890 1.16736 1.19491 0.95203 0.90431 0.95204 1.21072 0.90017 1.01674 1.01324 1.21449 1.01523 0.92727 0.93898 1.21427 0.95768 0.97468 0.98506 1.21423 0.93359 0.98931 0.97162 1.19062 0.94314 0.96878 1.02743 1.22161 0.91414 0.97859 0.89581 0.94057 0.79282 0.95348 0.96219 0.92211 0.92184 0.90363 0.89955 0.90679 0.91030 0.75127 0.81615 0.84155 0.81794 0.81645 0.82386 0.81814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.89 13.06 21.65 0.28 -58.61 16 2 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 3 Si 0.97 46.09 29.55 68.60 2.03 48.11 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.24 -13.25 9.99 84.03 0.84 -12.41 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -36.45 5.45 -343.44 -1.87 -38.32 16 10 C 0.16 5.87 4.18 86.38 0.36 6.23 16 11 C -0.10 -3.11 2.96 -10.07 -0.03 -3.14 16 12 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 13 C -0.11 -3.18 6.08 31.67 0.19 -2.99 16 14 C -0.11 -2.47 6.91 31.89 0.22 -2.25 16 15 C -0.12 -2.88 6.53 31.67 0.21 -2.67 16 16 C 0.15 4.15 3.21 45.72 0.15 4.30 16 17 H 0.09 2.44 7.60 -2.39 -0.02 2.42 16 18 N -0.71 -19.01 4.38 -442.05 -1.94 -20.95 16 19 C 0.57 16.00 7.76 86.76 0.67 16.67 16 20 O -0.57 -18.55 16.06 -3.91 -0.06 -18.61 16 21 C -0.21 -5.31 5.89 -20.00 -0.12 -5.43 16 22 C 0.16 4.04 10.68 85.42 0.91 4.96 16 23 N -0.50 -13.67 10.30 -187.69 -1.93 -15.61 16 24 C 0.12 2.79 6.61 40.27 0.27 3.06 16 25 C -0.12 -2.21 9.97 22.34 0.22 -1.99 16 26 C -0.08 -0.86 9.94 22.05 0.22 -0.64 16 27 C -0.11 -1.11 9.96 22.05 0.22 -0.89 16 28 C -0.09 -1.21 9.77 22.34 0.22 -0.99 16 29 C -0.13 -2.64 5.74 -21.28 -0.12 -2.77 16 30 C 0.02 0.36 9.46 23.01 0.22 0.58 16 31 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 32 H 0.38 19.79 7.55 -92.71 -0.70 19.09 16 33 H 0.03 1.03 7.12 -2.39 -0.02 1.01 16 34 H 0.02 0.76 7.40 -2.39 -0.02 0.74 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 36 H 0.06 1.88 7.77 -2.39 -0.02 1.86 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 1.64 8.05 -2.39 -0.02 1.62 16 41 H 0.41 10.55 3.86 -92.71 -0.36 10.19 16 42 H 0.17 3.91 6.37 -2.91 -0.02 3.89 16 43 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 44 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 45 H 0.17 0.46 8.06 -2.91 -0.02 0.43 16 46 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 47 H 0.16 3.14 7.70 -2.91 -0.02 3.11 16 Total: -1.00 -71.78 383.77 1.57 -70.22 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: -0.05 Total: 37.88 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 5.11 Total: -4.11 kcal Atomic # 7 Polarization: -128.03 SS G_CDS: -5.46 Total: -133.49 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.06 Total: -18.61 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -71.78 1.57 -70.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667752272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.473 kcal (2) G-P(sol) polarization free energy of solvation -71.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds