Wall clock time and date at job start Sat Apr 11 2020 05:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00219 * 2 1 4 4 H 1.48501 * 109.47027 * 239.99986 * 3 2 1 5 5 H 1.48498 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46925 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99830 * 173.56199 * 7 2 1 9 9 C 1.50693 * 120.00071 * 353.56219 * 7 2 1 10 10 C 1.53000 * 115.55018 * 85.40999 * 9 7 2 11 11 N 1.46506 * 109.47217 * 65.14014 * 10 9 7 12 12 C 1.34774 * 120.00245 * 178.34213 * 11 10 9 13 13 O 1.21286 * 119.99769 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00107 * 180.02562 * 12 11 10 15 15 C 1.50699 * 109.47351 * 180.02562 * 14 12 11 16 16 C 1.34671 * 126.59520 * 85.01812 * 15 14 12 17 17 N 1.34127 * 108.01946 * 179.97438 * 16 15 14 18 18 C 1.30491 * 109.25805 * 0.02562 * 17 16 15 19 19 N 1.35039 * 108.70148 * 359.76474 * 18 17 16 20 20 C 1.46501 * 126.39823 * 180.26934 * 19 18 17 21 21 C 1.50699 * 109.47202 * 265.11858 * 20 19 18 22 22 C 1.38233 * 120.00353 * 269.72711 * 21 20 19 23 23 C 1.38233 * 119.99986 * 179.76082 * 22 21 20 24 24 C 1.38240 * 120.00146 * 0.51421 * 23 22 21 25 25 C 1.38229 * 119.99614 * 359.74063 * 24 23 22 26 26 C 1.38232 * 120.00373 * 0.02562 * 25 24 23 27 27 C 1.52998 * 117.50397 * 231.08114 * 9 7 2 28 28 C 1.52998 * 117.50176 * 299.74174 * 9 7 2 29 29 H 0.97006 * 119.99631 * 5.06753 * 1 2 3 30 30 H 1.09008 * 109.47186 * 305.14386 * 10 9 7 31 31 H 1.09004 * 109.47399 * 185.14060 * 10 9 7 32 32 H 0.96994 * 119.99698 * 358.34687 * 11 10 9 33 33 H 1.08997 * 109.47307 * 59.99603 * 14 12 11 34 34 H 1.09009 * 109.46908 * 299.99529 * 14 12 11 35 35 H 1.07997 * 125.98349 * 359.96957 * 16 15 14 36 36 H 1.08000 * 125.65038 * 180.02562 * 18 17 16 37 37 H 1.08991 * 109.47334 * 25.12082 * 20 19 18 38 38 H 1.09007 * 109.47029 * 145.12080 * 20 19 18 39 39 H 1.08003 * 119.99876 * 0.02562 * 22 21 20 40 40 H 1.08001 * 120.00189 * 180.22920 * 23 22 21 41 41 H 1.07995 * 120.00100 * 179.72011 * 24 23 22 42 42 H 1.08005 * 120.00089 * 179.97438 * 25 24 23 43 43 H 1.08005 * 120.00076 * 179.97438 * 26 25 24 44 44 H 1.09000 * 117.50469 * 215.00476 * 27 9 7 45 45 H 1.09007 * 117.49309 * 0.02562 * 27 9 7 46 46 H 1.09007 * 117.49650 * 359.97438 * 28 9 7 47 47 H 1.09003 * 117.50284 * 144.96773 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1971 -0.1043 9 6 1.2581 -2.4949 0.1474 10 6 0.7023 -3.0869 -1.1493 11 7 1.8115 -3.4600 -2.0307 12 6 1.5605 -4.0362 -3.2229 13 8 0.4163 -4.2462 -3.5660 14 6 2.7015 -4.4204 -4.1292 15 6 2.1553 -5.0402 -5.3896 16 6 1.7379 -4.3860 -6.4902 17 7 1.3275 -5.2978 -7.3842 18 6 1.4741 -6.4921 -6.8791 19 7 1.9924 -6.3764 -5.6375 20 6 2.3179 -7.4758 -4.7256 21 6 1.1602 -7.7120 -3.7902 22 6 1.0996 -7.0423 -2.5824 23 6 0.0351 -7.2553 -1.7267 24 6 -0.9634 -8.1461 -2.0739 25 6 -0.9000 -8.8198 -3.2793 26 6 0.1620 -8.6031 -4.1372 27 6 1.7466 -3.4729 1.2179 28 6 0.4414 -2.7005 1.4248 29 1 -0.4850 0.8368 -0.0742 30 1 0.0757 -2.3469 -1.6473 31 1 0.1076 -3.9711 -0.9195 32 1 2.7266 -3.2924 -1.7561 33 1 3.3442 -5.1385 -3.6198 34 1 3.2794 -3.5315 -4.3828 35 1 1.7343 -3.3149 -6.6287 36 1 1.2263 -7.4195 -7.3739 37 1 2.5102 -8.3809 -5.3015 38 1 3.2053 -7.2177 -4.1474 39 1 1.8817 -6.3494 -2.3093 40 1 -0.0142 -6.7293 -0.7847 41 1 -1.7927 -8.3159 -1.4033 42 1 -1.6799 -9.5160 -3.5504 43 1 0.2116 -9.1298 -5.0788 44 1 1.6722 -4.5379 0.9983 45 1 2.6078 -3.1750 1.8162 46 1 0.4443 -1.8949 2.1591 47 1 -0.4921 -3.2571 1.3412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356333262.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:50 Heat of formation + Delta-G solvation = 57.381450 kcal Electronic energy + Delta-G solvation = -29669.660957 eV Core-core repulsion = 25818.381432 eV Total energy + Delta-G solvation = -3851.279525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.07767 -40.46073 -40.03766 -38.43130 -35.54427 -34.84853 -33.96102 -33.20521 -31.86323 -31.77992 -28.89156 -27.63807 -27.25862 -26.48601 -23.64230 -22.98627 -22.74234 -22.22810 -21.61157 -21.27249 -20.39604 -18.51600 -18.08359 -17.84112 -17.54929 -16.75274 -16.62015 -16.43780 -16.22839 -16.10195 -15.65367 -15.42782 -15.06710 -14.72430 -14.55549 -14.27772 -14.19307 -14.08798 -13.90830 -13.81446 -13.50988 -13.37101 -13.12067 -12.96065 -12.85166 -12.74966 -12.38901 -12.23975 -12.04453 -11.91965 -11.46859 -10.92895 -10.88478 -10.83337 -10.48920 -10.43748 -10.03997 -9.84093 -9.77826 -9.72984 -9.24425 -8.08951 -6.21948 0.27149 0.49618 1.08517 1.44191 1.45668 1.51743 1.82872 1.99348 2.21931 2.42790 2.58202 2.92117 3.20038 3.51430 3.62170 3.70450 3.71226 3.94000 4.02421 4.09214 4.12389 4.18045 4.22312 4.28977 4.36498 4.52009 4.57090 4.57704 4.62090 4.66421 4.68088 4.75490 4.88393 4.99712 5.03675 5.07955 5.09211 5.27918 5.38359 5.50731 5.58230 5.60312 5.61156 5.62961 5.72903 5.79999 5.81300 6.07026 6.37309 6.37790 6.83285 6.88641 7.17797 7.47710 7.50379 8.98241 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012520 B = 0.003631 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.916514 B = 7709.488702 C = 9260.510371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.025 3.975 3 Si 0.947 3.053 4 H -0.269 1.269 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.503 4.503 8 H 0.067 0.933 9 C 0.008 3.992 10 C 0.190 3.810 11 N -0.700 5.700 12 C 0.505 3.495 13 O -0.577 6.577 14 C -0.061 4.061 15 C 0.003 3.997 16 C -0.045 4.045 17 N -0.535 5.535 18 C 0.187 3.813 19 N -0.442 5.442 20 C 0.143 3.857 21 C -0.123 4.123 22 C -0.095 4.095 23 C -0.136 4.136 24 C -0.124 4.124 25 C -0.132 4.132 26 C -0.104 4.104 27 C -0.172 4.172 28 C -0.164 4.164 29 H 0.257 0.743 30 H 0.020 0.980 31 H 0.031 0.969 32 H 0.410 0.590 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.157 0.843 36 H 0.240 0.760 37 H 0.142 0.858 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.131 0.869 42 H 0.145 0.855 43 H 0.151 0.849 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.060 0.940 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.678 -20.094 -7.345 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.175 4.175 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.540 4.540 8 H 0.085 0.915 9 C 0.008 3.992 10 C 0.065 3.935 11 N -0.351 5.351 12 C 0.291 3.709 13 O -0.457 6.457 14 C -0.102 4.102 15 C -0.113 4.113 16 C -0.192 4.192 17 N -0.254 5.254 18 C -0.095 4.095 19 N -0.125 5.125 20 C 0.022 3.978 21 C -0.124 4.124 22 C -0.113 4.113 23 C -0.154 4.154 24 C -0.142 4.142 25 C -0.150 4.150 26 C -0.122 4.122 27 C -0.209 4.209 28 C -0.202 4.202 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.246 0.754 33 H 0.145 0.855 34 H 0.152 0.848 35 H 0.175 0.825 36 H 0.256 0.744 37 H 0.160 0.840 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.149 0.851 42 H 0.163 0.837 43 H 0.169 0.831 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.079 0.921 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.452 -20.044 -8.206 22.600 hybrid contribution 0.208 1.652 1.325 2.128 sum 6.660 -18.392 -6.881 20.736 Atomic orbital electron populations 1.70104 1.07367 1.27279 1.49956 1.25689 0.95348 1.02050 0.94455 0.85790 0.78394 0.79550 0.78950 1.19424 1.22135 1.19476 1.20645 0.93204 0.89493 1.50706 0.91535 1.19049 0.99426 0.94443 0.86312 1.20386 0.87733 0.94953 0.90397 1.45811 1.10870 1.60616 1.17755 1.20937 0.90777 0.77359 0.81792 1.90717 1.24598 1.55844 1.74491 1.20138 0.95939 1.03749 0.90358 1.20482 1.08948 0.84128 0.97730 1.22066 1.05834 0.99344 0.91964 1.70181 1.22431 1.00102 1.32641 1.25525 1.00763 0.99195 0.84014 1.45484 1.47073 1.05722 1.14177 1.21044 0.95717 0.89933 0.91076 1.20079 0.98310 0.98784 0.95215 1.21037 0.98273 0.97609 0.94419 1.21246 0.95305 0.98665 1.00225 1.21445 0.98518 0.96368 0.97857 1.21442 0.99035 1.00393 0.94108 1.21350 0.93210 0.97575 1.00075 1.22986 0.97093 0.96221 1.04563 1.22411 0.93780 1.01483 1.02518 0.93381 0.96155 0.95086 0.75437 0.85478 0.84842 0.82526 0.74439 0.84019 0.86904 0.87104 0.87130 0.85065 0.83735 0.83133 0.89199 0.89577 0.92095 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.36 12.91 21.45 0.28 -51.08 16 2 C 0.03 1.32 5.39 84.66 0.46 1.77 16 3 Si 0.95 41.65 29.55 68.60 2.03 43.67 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 5 H -0.30 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.50 -24.79 8.63 25.60 0.22 -24.57 16 8 H 0.07 3.12 7.82 -2.91 -0.02 3.10 16 9 C 0.01 0.38 1.38 -52.93 -0.07 0.30 16 10 C 0.19 8.35 5.50 86.38 0.48 8.82 16 11 N -0.70 -24.40 5.47 -463.04 -2.54 -26.94 16 12 C 0.50 16.91 5.71 87.66 0.50 17.41 16 13 O -0.58 -24.87 15.42 -3.05 -0.05 -24.92 16 14 C -0.06 -1.42 5.81 29.10 0.17 -1.25 16 15 C 0.00 0.07 5.45 40.95 0.22 0.29 16 16 C -0.04 -1.41 11.79 83.52 0.98 -0.43 16 17 N -0.54 -16.54 11.25 -200.32 -2.25 -18.79 16 18 C 0.19 4.21 12.56 180.27 2.26 6.47 16 19 N -0.44 -9.42 2.73 -518.63 -1.42 -10.84 16 20 C 0.14 2.01 6.05 85.63 0.52 2.53 16 21 C -0.12 -2.48 5.46 -19.87 -0.11 -2.59 16 22 C -0.09 -2.39 8.25 22.27 0.18 -2.20 16 23 C -0.14 -3.71 10.05 22.27 0.22 -3.49 16 24 C -0.12 -2.93 10.05 22.27 0.22 -2.71 16 25 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 26 C -0.10 -1.88 9.70 22.27 0.22 -1.67 16 27 C -0.17 -6.42 9.96 30.62 0.30 -6.12 16 28 C -0.16 -7.28 9.42 30.62 0.29 -6.99 16 29 H 0.26 14.19 8.32 -92.70 -0.77 13.42 16 30 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.03 1.36 8.09 -2.38 -0.02 1.34 16 32 H 0.41 12.37 8.37 -92.71 -0.78 11.60 16 33 H 0.13 2.03 6.92 -2.39 -0.02 2.01 16 34 H 0.13 2.61 8.14 -2.38 -0.02 2.59 16 35 H 0.16 4.85 8.06 -2.91 -0.02 4.83 16 36 H 0.24 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.14 0.89 8.07 -2.39 -0.02 0.87 16 38 H 0.11 1.22 7.23 -2.38 -0.02 1.20 16 39 H 0.11 2.76 6.20 -2.91 -0.02 2.74 16 40 H 0.11 3.12 8.06 -2.91 -0.02 3.09 16 41 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 42 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 43 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 44 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 45 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16 46 H 0.06 2.96 8.14 -2.38 -0.02 2.94 16 47 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -74.31 398.07 3.55 -70.76 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: 0.20 Total: 34.94 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 7.29 Total: -16.81 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -5.93 Total: -107.65 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.05 Total: -24.92 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Total: -74.31 3.55 -70.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356333262.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.141 kcal (2) G-P(sol) polarization free energy of solvation -74.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds