Wall clock time and date at job start Sat Apr 11 2020 05:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 119.99724 * 2 1 4 4 H 1.48500 * 109.47437 * 269.99630 * 3 2 1 5 5 H 1.48497 * 109.47430 * 30.00021 * 3 2 1 6 6 H 1.48506 * 109.47228 * 150.00041 * 3 2 1 7 7 C 1.38808 * 120.00356 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00331 * 196.63669 * 7 2 1 9 9 N 1.36943 * 119.99921 * 16.63182 * 7 2 1 10 10 C 1.46962 * 120.59150 * 208.76657 * 9 7 2 11 11 C 1.53372 * 108.63082 * 235.24481 * 10 9 7 12 12 N 1.46968 * 108.63540 * 310.57845 * 11 10 9 13 13 C 1.34780 * 120.59249 * 235.20177 * 12 11 10 14 14 O 1.21632 * 120.00018 * 6.27359 * 13 12 11 15 15 C 1.47261 * 119.99953 * 186.27035 * 13 12 11 16 16 C 1.46696 * 126.94058 * 29.07119 * 15 13 12 17 17 C 1.34480 * 106.32908 * 180.29670 * 16 15 13 18 18 N 1.36454 * 108.85805 * 359.57509 * 17 16 15 19 19 C 1.46501 * 124.84998 * 180.13925 * 18 17 16 20 20 C 1.50701 * 109.47300 * 270.34903 * 19 18 17 21 21 C 1.38235 * 119.99451 * 269.72864 * 20 19 18 22 22 C 1.38237 * 119.99637 * 179.76719 * 21 20 19 23 23 C 1.38241 * 119.99884 * 0.50542 * 22 21 20 24 24 C 1.38233 * 120.00027 * 359.74733 * 23 22 21 25 25 C 1.38234 * 120.00149 * 89.99806 * 20 19 18 26 26 C 1.34651 * 110.29614 * 0.44507 * 18 17 16 27 27 C 1.46957 * 118.81112 * 55.47953 * 12 11 10 28 28 C 1.46959 * 120.59289 * 28.78615 * 9 7 2 29 29 H 0.97002 * 120.00391 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.61118 * 115.50459 * 10 9 7 31 31 H 1.08999 * 109.61519 * 354.98971 * 10 9 7 32 32 H 1.09005 * 109.61339 * 190.83122 * 11 10 9 33 33 H 1.09007 * 109.75218 * 70.40737 * 11 10 9 34 34 H 1.07994 * 126.82923 * 0.03420 * 16 15 13 35 35 H 1.08004 * 125.57252 * 179.73887 * 17 16 15 36 36 H 1.09006 * 109.46865 * 30.34863 * 19 18 17 37 37 H 1.08997 * 109.47070 * 150.34352 * 19 18 17 38 38 H 1.07997 * 120.00391 * 359.97438 * 21 20 19 39 39 H 1.07994 * 120.00150 * 180.22527 * 22 21 20 40 40 H 1.07996 * 119.99668 * 179.72644 * 23 22 21 41 41 H 1.07995 * 120.00377 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.99821 * 0.02562 * 25 20 19 43 43 H 1.08002 * 125.80230 * 179.73729 * 26 18 17 44 44 H 1.09001 * 109.61115 * 64.26652 * 27 12 11 45 45 H 1.08998 * 109.60937 * 184.77545 * 27 12 11 46 46 H 1.09001 * 109.60894 * 244.49645 * 28 9 7 47 47 H 1.09005 * 109.60981 * 5.00330 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0563 -1.2215 0.2683 9 7 1.3685 -2.3634 -0.3384 10 6 1.8075 -3.6505 0.2188 11 6 2.1032 -4.6108 -0.9399 12 7 0.9636 -4.5923 -1.8677 13 6 0.3326 -5.7354 -2.2020 14 8 0.6293 -6.7777 -1.6498 15 6 -0.7161 -5.7223 -3.2358 16 6 -0.8181 -4.8057 -4.3766 17 6 -1.9303 -5.1573 -5.0458 18 7 -2.5093 -6.2183 -4.4125 19 6 -3.7394 -6.8840 -4.8484 20 6 -4.9274 -6.2135 -4.2079 21 6 -5.3986 -6.6607 -2.9877 22 6 -6.4853 -6.0426 -2.3979 23 6 -7.1074 -4.9842 -3.0333 24 6 -6.6394 -4.5404 -4.2560 25 6 -5.5494 -5.1551 -4.8433 26 6 -1.7920 -6.5618 -3.3259 27 6 0.5283 -3.3058 -2.4292 28 6 0.2290 -2.3449 -1.2661 29 1 -0.4851 0.8400 -0.0004 30 1 1.0185 -4.0658 0.8458 31 1 2.7102 -3.5037 0.8118 32 1 2.2430 -5.6199 -0.5523 33 1 3.0052 -4.2913 -1.4620 34 1 -0.1379 -4.0050 -4.6265 35 1 -2.3029 -4.6798 -5.9400 36 1 -3.8247 -6.8157 -5.9329 37 1 -3.7100 -7.9323 -4.5515 38 1 -4.9156 -7.4907 -2.4936 39 1 -6.8512 -6.3896 -1.4429 40 1 -7.9592 -4.5042 -2.5745 41 1 -7.1256 -3.7138 -4.7526 42 1 -5.1842 -4.8088 -5.7989 43 1 -2.0264 -7.3640 -2.6418 44 1 1.3201 -2.8927 -3.0541 45 1 -0.3724 -3.4529 -3.0253 46 1 -0.6724 -2.6673 -0.7448 47 1 0.0892 -1.3358 -1.6538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359437321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:01 Heat of formation + Delta-G solvation = 84.524592 kcal Electronic energy + Delta-G solvation = -28958.067535 eV Core-core repulsion = 25107.965025 eV Total energy + Delta-G solvation = -3850.102510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.33117 -39.47070 -38.84238 -36.52026 -34.11030 -33.61152 -31.46477 -31.23061 -30.50083 -29.83649 -29.08802 -27.01697 -26.16228 -23.84826 -22.94487 -22.84971 -21.99883 -21.55943 -20.19529 -19.76658 -18.60311 -17.53382 -17.05083 -16.36065 -15.84673 -15.69500 -15.47297 -15.07223 -14.72175 -14.59721 -14.28825 -13.86916 -13.74599 -13.55438 -13.53083 -13.28194 -13.02960 -12.90538 -12.79694 -12.74314 -12.37731 -12.26583 -11.81921 -11.45001 -11.40096 -11.33657 -11.14444 -10.77491 -10.62250 -10.39612 -10.12452 -9.90579 -9.75045 -9.31365 -9.22440 -9.16258 -8.52911 -8.39212 -8.25996 -7.97647 -6.60607 -5.78076 -3.23131 0.91058 1.10003 2.07703 2.56127 2.83052 3.37946 3.44954 3.46255 3.55307 3.69764 3.95158 4.27958 4.31529 4.50323 4.67240 4.72589 4.81713 4.89948 5.01364 5.07596 5.19095 5.25923 5.35647 5.38512 5.49840 5.61201 5.62639 5.70512 5.96177 6.00360 6.04661 6.07708 6.12696 6.18276 6.20845 6.22016 6.32255 6.37431 6.54073 6.59122 6.66032 6.86262 6.90756 7.06625 7.16210 7.27569 7.40205 7.59109 7.78543 8.17251 8.43957 8.84750 9.19956 9.82602 10.40835 11.29138 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011490 B = 0.003032 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.390147 B = 9233.437418 C =10604.290968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.133 3.867 11 C 0.097 3.903 12 N -0.590 5.590 13 C 0.585 3.415 14 O -0.572 6.572 15 C -0.216 4.216 16 C -0.166 4.166 17 C -0.017 4.017 18 N -0.441 5.441 19 C 0.146 3.854 20 C -0.117 4.117 21 C -0.099 4.099 22 C -0.120 4.120 23 C -0.111 4.111 24 C -0.121 4.121 25 C -0.098 4.098 26 C 0.066 3.934 27 C 0.069 3.931 28 C 0.159 3.841 29 H 0.254 0.746 30 H 0.023 0.977 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.151 0.849 35 H 0.163 0.837 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.168 0.832 44 H 0.058 0.942 45 H 0.093 0.907 46 H 0.021 0.979 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.293 -12.562 -12.934 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.085 0.915 9 N -0.315 5.315 10 C 0.005 3.995 11 C -0.027 4.027 12 N -0.321 5.321 13 C 0.375 3.625 14 O -0.454 6.454 15 C -0.226 4.226 16 C -0.190 4.190 17 C -0.143 4.143 18 N -0.117 5.117 19 C 0.024 3.976 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.138 4.138 23 C -0.129 4.129 24 C -0.139 4.139 25 C -0.117 4.117 26 C -0.068 4.068 27 C -0.055 4.055 28 C 0.033 3.967 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.168 0.832 35 H 0.180 0.820 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.185 0.815 44 H 0.076 0.924 45 H 0.111 0.889 46 H 0.039 0.961 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.502 -13.072 -12.746 22.708 hybrid contribution 0.312 1.150 0.075 1.194 sum -13.190 -11.922 -12.671 21.833 Atomic orbital electron populations 1.70021 1.05277 1.25531 1.53882 1.25068 0.95285 0.98435 1.00786 0.86270 0.79115 0.83573 0.77692 1.21405 1.21789 1.20415 1.19230 0.92497 0.84635 1.41886 0.91549 1.44010 1.36188 1.01753 1.49572 1.21285 0.98257 0.87092 0.92817 1.22164 0.87558 1.00919 0.92096 1.47816 1.32239 1.06910 1.45146 1.17467 0.80748 0.83121 0.81210 1.90693 1.67071 1.31671 1.55916 1.20368 0.99837 1.02124 1.00281 1.22200 0.99175 1.01222 0.96393 1.21665 0.97392 0.93752 1.01526 1.43640 1.19853 1.26454 1.21794 1.20742 0.80224 0.96527 1.00068 1.19992 0.97184 0.98201 0.96384 1.21072 0.96345 0.99869 0.94442 1.21189 0.96195 0.96434 0.99946 1.21255 0.99825 0.96551 0.95254 1.21171 0.96907 0.99875 0.95923 1.21026 0.95675 0.95070 0.99918 1.21594 0.93176 1.00907 0.91145 1.23160 0.99884 0.83723 0.98697 1.21253 0.89009 0.98311 0.88139 0.93594 0.95939 0.91712 0.90128 0.92165 0.83171 0.81979 0.88283 0.88339 0.85926 0.85742 0.85859 0.85779 0.85982 0.81516 0.92410 0.88940 0.96064 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 11.19 55.49 0.62 -25.46 16 2 C 0.00 0.08 4.92 -17.44 -0.09 -0.01 16 3 Si 0.90 21.53 29.58 -169.99 -5.03 16.50 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.25 -6.94 9.57 -15.06 -0.14 -7.08 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -15.14 2.96 -171.77 -0.51 -15.65 16 10 C 0.13 2.96 6.67 -3.60 -0.02 2.93 16 11 C 0.10 1.94 6.60 -3.59 -0.02 1.91 16 12 N -0.59 -11.89 2.94 -173.54 -0.51 -12.40 16 13 C 0.58 11.68 7.63 -12.59 -0.10 11.58 16 14 O -0.57 -12.73 16.44 5.25 0.09 -12.64 16 15 C -0.22 -3.59 5.67 -103.35 -0.59 -4.17 16 16 C -0.17 -2.33 8.62 -37.50 -0.32 -2.66 16 17 C -0.02 -0.20 11.34 -16.82 -0.19 -0.39 16 18 N -0.44 -4.82 2.67 -118.41 -0.32 -5.14 16 19 C 0.15 1.08 6.13 -5.19 -0.03 1.05 16 20 C -0.12 -1.01 5.46 -104.62 -0.57 -1.59 16 21 C -0.10 -0.89 9.70 -39.58 -0.38 -1.28 16 22 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 23 C -0.11 -0.95 10.05 -39.58 -0.40 -1.35 16 24 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 25 C -0.10 -0.83 9.70 -39.58 -0.38 -1.21 16 26 C 0.07 0.90 11.23 -16.85 -0.19 0.72 16 27 C 0.07 1.36 5.55 -3.37 -0.02 1.34 16 28 C 0.16 3.85 5.52 -3.37 -0.02 3.83 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.36 7.93 -51.93 -0.41 0.95 16 32 H 0.08 1.58 6.99 -51.93 -0.36 1.21 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.15 2.02 6.62 -52.49 -0.35 1.67 16 35 H 0.16 1.32 8.06 -52.48 -0.42 0.89 16 36 H 0.10 0.52 8.08 -51.93 -0.42 0.10 16 37 H 0.10 0.58 8.07 -51.93 -0.42 0.16 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.09 1.64 4.01 -51.93 -0.21 1.44 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.10 2.55 6.00 -51.93 -0.31 2.24 16 LS Contribution 384.43 15.07 5.79 5.79 Total: -1.00 -34.28 384.43 -10.81 -45.09 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.68 Total: 3.15 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -4.26 Total: 0.75 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.71 Total: -58.65 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.28 -10.81 -45.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359437321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.618 kcal (2) G-P(sol) polarization free energy of solvation -34.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds