Wall clock time and date at job start Sat Apr 11 2020 05:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 119.99724 * 2 1 4 4 H 1.48500 * 109.47437 * 269.99630 * 3 2 1 5 5 H 1.48497 * 109.47430 * 30.00021 * 3 2 1 6 6 H 1.48506 * 109.47228 * 150.00041 * 3 2 1 7 7 C 1.38808 * 120.00356 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00331 * 196.63669 * 7 2 1 9 9 N 1.36943 * 119.99921 * 16.63182 * 7 2 1 10 10 C 1.46962 * 120.59150 * 208.76657 * 9 7 2 11 11 C 1.53372 * 108.63082 * 235.24481 * 10 9 7 12 12 N 1.46968 * 108.63540 * 310.57845 * 11 10 9 13 13 C 1.34780 * 120.59249 * 235.20177 * 12 11 10 14 14 O 1.21632 * 120.00018 * 6.27359 * 13 12 11 15 15 C 1.47261 * 119.99953 * 186.27035 * 13 12 11 16 16 C 1.46696 * 126.94058 * 29.07119 * 15 13 12 17 17 C 1.34480 * 106.32908 * 180.29670 * 16 15 13 18 18 N 1.36454 * 108.85805 * 359.57509 * 17 16 15 19 19 C 1.46501 * 124.84998 * 180.13925 * 18 17 16 20 20 C 1.50701 * 109.47300 * 270.34903 * 19 18 17 21 21 C 1.38235 * 119.99451 * 269.72864 * 20 19 18 22 22 C 1.38237 * 119.99637 * 179.76719 * 21 20 19 23 23 C 1.38241 * 119.99884 * 0.50542 * 22 21 20 24 24 C 1.38233 * 120.00027 * 359.74733 * 23 22 21 25 25 C 1.38234 * 120.00149 * 89.99806 * 20 19 18 26 26 C 1.34651 * 110.29614 * 0.44507 * 18 17 16 27 27 C 1.46957 * 118.81112 * 55.47953 * 12 11 10 28 28 C 1.46959 * 120.59289 * 28.78615 * 9 7 2 29 29 H 0.97002 * 120.00391 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.61118 * 115.50459 * 10 9 7 31 31 H 1.08999 * 109.61519 * 354.98971 * 10 9 7 32 32 H 1.09005 * 109.61339 * 190.83122 * 11 10 9 33 33 H 1.09007 * 109.75218 * 70.40737 * 11 10 9 34 34 H 1.07994 * 126.82923 * 0.03420 * 16 15 13 35 35 H 1.08004 * 125.57252 * 179.73887 * 17 16 15 36 36 H 1.09006 * 109.46865 * 30.34863 * 19 18 17 37 37 H 1.08997 * 109.47070 * 150.34352 * 19 18 17 38 38 H 1.07997 * 120.00391 * 359.97438 * 21 20 19 39 39 H 1.07994 * 120.00150 * 180.22527 * 22 21 20 40 40 H 1.07996 * 119.99668 * 179.72644 * 23 22 21 41 41 H 1.07995 * 120.00377 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.99821 * 0.02562 * 25 20 19 43 43 H 1.08002 * 125.80230 * 179.73729 * 26 18 17 44 44 H 1.09001 * 109.61115 * 64.26652 * 27 12 11 45 45 H 1.08998 * 109.60937 * 184.77545 * 27 12 11 46 46 H 1.09001 * 109.60894 * 244.49645 * 28 9 7 47 47 H 1.09005 * 109.60981 * 5.00330 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0563 -1.2215 0.2683 9 7 1.3685 -2.3634 -0.3384 10 6 1.8075 -3.6505 0.2188 11 6 2.1032 -4.6108 -0.9399 12 7 0.9636 -4.5923 -1.8677 13 6 0.3326 -5.7354 -2.2020 14 8 0.6293 -6.7777 -1.6498 15 6 -0.7161 -5.7223 -3.2358 16 6 -0.8181 -4.8057 -4.3766 17 6 -1.9303 -5.1573 -5.0458 18 7 -2.5093 -6.2183 -4.4125 19 6 -3.7394 -6.8840 -4.8484 20 6 -4.9274 -6.2135 -4.2079 21 6 -5.3986 -6.6607 -2.9877 22 6 -6.4853 -6.0426 -2.3979 23 6 -7.1074 -4.9842 -3.0333 24 6 -6.6394 -4.5404 -4.2560 25 6 -5.5494 -5.1551 -4.8433 26 6 -1.7920 -6.5618 -3.3259 27 6 0.5283 -3.3058 -2.4292 28 6 0.2290 -2.3449 -1.2661 29 1 -0.4851 0.8400 -0.0004 30 1 1.0185 -4.0658 0.8458 31 1 2.7102 -3.5037 0.8118 32 1 2.2430 -5.6199 -0.5523 33 1 3.0052 -4.2913 -1.4620 34 1 -0.1379 -4.0050 -4.6265 35 1 -2.3029 -4.6798 -5.9400 36 1 -3.8247 -6.8157 -5.9329 37 1 -3.7100 -7.9323 -4.5515 38 1 -4.9156 -7.4907 -2.4936 39 1 -6.8512 -6.3896 -1.4429 40 1 -7.9592 -4.5042 -2.5745 41 1 -7.1256 -3.7138 -4.7526 42 1 -5.1842 -4.8088 -5.7989 43 1 -2.0264 -7.3640 -2.6418 44 1 1.3201 -2.8927 -3.0541 45 1 -0.3724 -3.4529 -3.0253 46 1 -0.6724 -2.6673 -0.7448 47 1 0.0892 -1.3358 -1.6538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359437321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:00 Heat of formation + Delta-G solvation = 66.495205 kcal Electronic energy + Delta-G solvation = -28958.849348 eV Core-core repulsion = 25107.965025 eV Total energy + Delta-G solvation = -3850.884323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31534 -40.62520 -39.87081 -38.29436 -35.59642 -34.76967 -33.22902 -32.00094 -31.83667 -31.12169 -30.14206 -28.71818 -27.12592 -25.62053 -24.49565 -23.65967 -23.29454 -22.41694 -21.49889 -21.02817 -19.98554 -18.90971 -18.02938 -17.62610 -17.31186 -16.71383 -16.54821 -16.50082 -16.08104 -15.97639 -15.45665 -15.28473 -15.15659 -15.01392 -14.77146 -14.52482 -14.33232 -13.99131 -13.87825 -13.61170 -13.48453 -13.31658 -13.14423 -12.96746 -12.85940 -12.62986 -12.47258 -12.19308 -12.08723 -12.01197 -11.91329 -11.79725 -11.63913 -10.86254 -10.58075 -9.85165 -9.84670 -9.79359 -9.41612 -9.21265 -8.63101 -7.86767 -5.36967 0.26426 0.47297 0.88678 1.50029 1.50768 1.55404 1.60065 1.93169 2.25215 2.48849 2.57426 2.91875 3.27291 3.63429 3.71237 3.72554 3.89812 4.06150 4.10686 4.14133 4.22277 4.25839 4.27080 4.32782 4.44533 4.49749 4.58530 4.61191 4.63641 4.69009 4.73179 4.82586 4.83468 5.03255 5.03760 5.06620 5.12850 5.15139 5.25499 5.51355 5.54403 5.56067 5.59744 5.62692 5.70832 5.80555 6.06237 6.14080 6.36430 6.39774 6.61808 7.11340 7.30327 7.78734 8.34142 9.18274 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011490 B = 0.003032 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.390147 B = 9233.437418 C =10604.290968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.046 4.046 3 Si 0.972 3.028 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.267 4.267 8 H 0.070 0.930 9 N -0.609 5.609 10 C 0.133 3.867 11 C 0.106 3.894 12 N -0.598 5.598 13 C 0.581 3.419 14 O -0.603 6.603 15 C -0.259 4.259 16 C -0.191 4.191 17 C 0.005 3.995 18 N -0.430 5.430 19 C 0.143 3.857 20 C -0.125 4.125 21 C -0.115 4.115 22 C -0.138 4.138 23 C -0.124 4.124 24 C -0.134 4.134 25 C -0.105 4.105 26 C 0.070 3.930 27 C 0.090 3.910 28 C 0.168 3.832 29 H 0.252 0.748 30 H 0.004 0.996 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.152 0.848 35 H 0.203 0.797 36 H 0.131 0.869 37 H 0.115 0.885 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.145 0.855 43 H 0.174 0.826 44 H 0.066 0.934 45 H 0.115 0.885 46 H -0.011 1.011 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.714 -12.621 -15.364 24.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.241 4.241 3 Si 0.800 3.200 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.397 4.397 8 H 0.088 0.912 9 N -0.332 5.332 10 C 0.007 3.993 11 C -0.019 4.019 12 N -0.328 5.328 13 C 0.373 3.627 14 O -0.487 6.487 15 C -0.269 4.269 16 C -0.214 4.214 17 C -0.122 4.122 18 N -0.104 5.104 19 C 0.023 3.977 20 C -0.126 4.126 21 C -0.134 4.134 22 C -0.156 4.156 23 C -0.142 4.142 24 C -0.151 4.151 25 C -0.123 4.123 26 C -0.066 4.066 27 C -0.034 4.034 28 C 0.042 3.958 29 H 0.061 0.939 30 H 0.022 0.978 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.170 0.830 35 H 0.220 0.780 36 H 0.149 0.851 37 H 0.133 0.867 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.158 0.842 42 H 0.163 0.837 43 H 0.191 0.809 44 H 0.084 0.916 45 H 0.133 0.867 46 H 0.007 0.993 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.929 -13.153 -15.197 24.454 hybrid contribution 0.323 1.096 0.858 1.429 sum -13.606 -12.057 -14.339 23.154 Atomic orbital electron populations 1.70181 1.06773 1.26070 1.55027 1.25841 0.96025 1.01563 1.00707 0.85207 0.77937 0.79136 0.77763 1.20698 1.22258 1.19472 1.19561 0.92860 0.85573 1.41713 0.91235 1.44277 1.36292 1.02365 1.50296 1.21344 0.97915 0.86365 0.93683 1.22008 0.88163 1.00270 0.91419 1.47893 1.32404 1.07231 1.45322 1.18025 0.80912 0.82347 0.81423 1.90655 1.68140 1.32554 1.57401 1.20301 1.00538 1.05007 1.01082 1.22268 1.00873 1.01770 0.96536 1.22221 0.95780 0.92617 1.01591 1.43889 1.20193 1.25934 1.20377 1.21082 0.77917 0.96886 1.01783 1.20144 0.97667 0.98491 0.96296 1.21326 0.96632 1.00364 0.95047 1.21438 0.96636 0.96915 1.00619 1.21538 1.00362 0.96631 0.95690 1.21492 0.97242 1.00434 0.95981 1.21362 0.95464 0.94730 1.00759 1.21703 0.92716 1.00294 0.91857 1.22937 1.01238 0.82488 0.96739 1.21062 0.87630 0.98124 0.89031 0.93907 0.97785 0.90700 0.89761 0.91017 0.83043 0.78001 0.85093 0.86705 0.85269 0.84974 0.84649 0.84191 0.83746 0.80854 0.91569 0.86710 0.99295 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.12 11.19 21.65 0.24 -54.87 16 2 C -0.05 -2.54 4.92 84.86 0.42 -2.12 16 3 Si 0.97 44.36 29.58 68.60 2.03 46.39 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.27 -14.78 9.57 84.03 0.80 -13.98 16 8 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 9 N -0.61 -31.73 2.96 -697.36 -2.07 -33.80 16 10 C 0.13 6.07 6.67 86.42 0.58 6.64 16 11 C 0.11 4.25 6.60 86.41 0.57 4.82 16 12 N -0.60 -24.25 2.94 -821.20 -2.42 -26.66 16 13 C 0.58 23.36 7.63 86.61 0.66 24.02 16 14 O -0.60 -27.27 16.44 -4.13 -0.07 -27.34 16 15 C -0.26 -8.42 5.67 -19.04 -0.11 -8.52 16 16 C -0.19 -5.01 8.62 23.62 0.20 -4.81 16 17 C 0.00 0.09 11.34 83.11 0.94 1.03 16 18 N -0.43 -8.05 2.67 -528.54 -1.41 -9.46 16 19 C 0.14 1.59 6.13 85.63 0.52 2.11 16 20 C -0.13 -1.85 5.46 -19.87 -0.11 -1.96 16 21 C -0.12 -1.94 9.70 22.27 0.22 -1.72 16 22 C -0.14 -2.38 10.05 22.27 0.22 -2.16 16 23 C -0.12 -2.02 10.05 22.27 0.22 -1.80 16 24 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 25 C -0.10 -1.46 9.70 22.27 0.22 -1.25 16 26 C 0.07 1.84 11.23 83.92 0.94 2.78 16 27 C 0.09 3.53 5.55 86.57 0.48 4.01 16 28 C 0.17 8.34 5.52 86.56 0.48 8.82 16 29 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.07 3.19 7.93 -2.39 -0.02 3.17 16 32 H 0.08 3.33 6.99 -2.38 -0.02 3.31 16 33 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 34 H 0.15 3.82 6.62 -2.91 -0.02 3.80 16 35 H 0.20 2.17 8.06 -2.91 -0.02 2.15 16 36 H 0.13 0.70 8.08 -2.38 -0.02 0.68 16 37 H 0.11 0.95 8.07 -2.39 -0.02 0.93 16 38 H 0.13 1.87 8.06 -2.91 -0.02 1.84 16 39 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 41 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 43 H 0.17 4.16 8.06 -2.91 -0.02 4.14 16 44 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.12 4.04 4.01 -2.39 -0.01 4.03 16 46 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 47 H 0.07 4.05 6.00 -2.38 -0.01 4.03 16 Total: -1.00 -75.74 384.43 4.77 -70.98 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.97 Total: 20.62 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 7.49 Total: 14.14 kcal Atomic # 7 Polarization: -119.14 SS G_CDS: -5.65 Total: -124.79 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.07 Total: -27.34 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -75.74 4.77 -70.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359437321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.473 kcal (2) G-P(sol) polarization free energy of solvation -75.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds