Wall clock time and date at job start Sat Apr 11 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86798 * 119.99920 * 2 1 4 4 H 1.48502 * 109.47495 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47468 * 300.00206 * 3 2 1 6 6 H 1.48504 * 109.47190 * 59.99833 * 3 2 1 7 7 C 1.40226 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99598 * 197.87539 * 7 2 1 9 9 C 1.41105 * 120.00158 * 17.87884 * 7 2 1 10 10 C 1.40889 * 120.10384 * 204.62271 * 9 7 2 11 11 C 1.36318 * 119.89070 * 180.02562 * 10 9 7 12 12 C 1.40016 * 120.10721 * 0.02562 * 11 10 9 13 13 C 1.47639 * 119.89107 * 179.97438 * 12 11 10 14 14 O 1.21585 * 120.00196 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99683 * 180.28038 * 13 12 11 16 16 C 1.46498 * 120.00217 * 179.72515 * 15 13 12 17 17 C 1.53001 * 109.47362 * 179.97438 * 16 15 13 18 18 C 1.50694 * 109.47120 * 179.97438 * 17 16 15 19 19 C 1.34852 * 125.96705 * 124.99792 * 18 17 16 20 20 N 1.36307 * 106.69287 * 179.97438 * 19 18 17 21 21 C 1.35427 * 107.39944 * 0.04984 * 20 19 18 22 22 N 1.30088 * 108.62476 * 359.65839 * 21 20 19 23 23 C 1.51040 * 123.97835 * 179.87979 * 21 20 19 24 24 C 1.53398 * 108.21242 * 344.04506 * 23 21 20 25 25 C 1.53150 * 109.23573 * 48.83259 * 24 23 21 26 26 C 1.46479 * 127.77924 * 180.02562 * 20 19 18 27 27 C 1.40005 * 120.20854 * 0.23546 * 12 11 10 28 28 C 1.36319 * 120.10715 * 359.47613 * 27 12 11 29 29 H 0.97003 * 119.99934 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.05038 * 0.02562 * 10 9 7 31 31 H 1.08004 * 119.94373 * 180.02562 * 11 10 9 32 32 H 0.96998 * 119.99710 * 359.71759 * 15 13 12 33 33 H 1.09007 * 109.46852 * 299.99474 * 16 15 13 34 34 H 1.08996 * 109.47335 * 59.98659 * 16 15 13 35 35 H 1.08993 * 109.46918 * 299.99587 * 17 16 15 36 36 H 1.09000 * 109.46941 * 59.99630 * 17 16 15 37 37 H 1.08001 * 126.65463 * 359.97438 * 19 18 17 38 38 H 1.09007 * 109.71281 * 224.36142 * 23 21 20 39 39 H 1.09005 * 109.74856 * 103.75026 * 23 21 20 40 40 H 1.09003 * 109.50860 * 288.90059 * 24 23 21 41 41 H 1.09008 * 109.50800 * 168.75964 * 24 23 21 42 42 H 1.09005 * 109.46118 * 170.50824 * 25 24 23 43 43 H 1.08996 * 109.46402 * 50.52171 * 25 24 23 44 44 H 1.08997 * 109.57707 * 282.67022 * 26 20 19 45 45 H 1.09001 * 109.58013 * 43.07907 * 26 20 19 46 46 H 1.07998 * 119.94664 * 179.72730 * 27 12 11 47 47 H 1.08004 * 120.05629 * 180.23532 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7005 1.3465 0.0006 5 1 1.8817 2.3965 -1.2124 6 1 1.8817 2.3965 1.2125 7 6 2.0076 -1.2144 0.0005 8 1 3.0485 -1.2367 0.2877 9 6 1.3532 -2.4071 -0.3741 10 6 1.8269 -3.6494 0.0920 11 6 1.1918 -4.7990 -0.2731 12 6 0.0707 -4.7465 -1.1102 13 6 -0.6133 -5.9946 -1.5031 14 8 -0.2026 -7.0657 -1.1001 15 7 -1.6892 -5.9470 -2.3134 16 6 -2.3644 -7.1858 -2.7081 17 6 -3.5457 -6.8539 -3.6220 18 6 -4.2397 -8.1283 -4.0285 19 6 -5.5497 -8.4035 -3.8652 20 7 -5.7527 -9.6540 -4.3682 21 6 -4.5600 -10.1061 -4.8231 22 7 -3.6628 -9.1858 -4.6223 23 6 -4.3572 -11.4621 -5.4568 24 6 -5.5761 -12.3328 -5.1264 25 6 -6.8549 -11.5485 -5.4346 26 6 -7.0089 -10.4052 -4.4253 27 6 -0.4005 -3.5148 -1.5803 28 6 0.2246 -2.3594 -1.2159 29 1 -0.4850 0.8401 0.0004 30 1 2.6919 -3.6908 0.7374 31 1 1.5539 -5.7518 0.0841 32 1 -2.0166 -5.0925 -2.6351 33 1 -1.6626 -7.8285 -3.2398 34 1 -2.7269 -7.7013 -1.8188 35 1 -4.2473 -6.2115 -3.0900 36 1 -3.1834 -6.3383 -4.5114 37 1 -6.2937 -7.7583 -3.4218 38 1 -3.4553 -11.9243 -5.0555 39 1 -4.2648 -11.3534 -6.5375 40 1 -5.5578 -12.5986 -4.0695 41 1 -5.5504 -13.2395 -5.7311 42 1 -7.7152 -12.2141 -5.3634 43 1 -6.7954 -11.1384 -6.4427 44 1 -7.2348 -10.8145 -3.4407 45 1 -7.8157 -9.7444 -4.7424 46 1 -1.2629 -3.4796 -2.2294 47 1 -0.1419 -1.4094 -1.5760 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371166035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:07 Heat of formation + Delta-G solvation = 20.894375 kcal Electronic energy + Delta-G solvation = -27197.145665 eV Core-core repulsion = 23344.283942 eV Total energy + Delta-G solvation = -3852.861723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.52241 -38.96929 -37.27660 -36.96878 -34.79141 -33.80998 -33.49905 -31.80686 -30.13266 -29.38637 -29.20291 -28.04201 -25.89656 -24.54084 -23.09038 -22.59955 -21.57902 -20.82744 -20.34582 -19.39193 -19.30989 -17.47386 -17.15669 -16.64226 -16.28660 -15.56626 -15.27713 -15.15398 -14.69135 -14.52345 -14.48319 -14.06626 -13.95694 -13.92232 -13.65555 -13.17289 -13.16357 -12.73934 -12.47208 -12.37651 -12.05056 -11.86106 -11.68796 -11.63526 -11.56486 -11.49349 -11.35241 -11.25707 -11.14080 -10.89120 -10.58685 -10.00041 -9.97751 -9.67466 -9.51011 -9.29955 -8.86518 -8.43032 -8.34948 -7.65772 -7.47760 -6.98842 -4.54828 1.85182 2.30578 2.51245 2.94162 2.94610 2.98148 3.03841 3.09542 3.77911 3.90705 3.93082 3.96427 4.09321 4.14558 4.20610 4.63121 4.63994 4.75250 4.84458 4.88427 5.08969 5.12924 5.16621 5.23215 5.32609 5.35139 5.45662 5.62879 5.63168 5.67977 5.73774 6.02493 6.10636 6.11951 6.26446 6.38760 6.42305 6.61395 6.82434 6.87996 6.99157 7.05492 7.16539 7.19770 7.49736 7.72319 7.86125 7.91925 8.00359 8.12881 8.37039 8.45573 8.68683 8.81247 9.20862 9.93336 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029511 B = 0.001668 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.582366 B =16787.307940 C =17434.513716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.444 4.444 8 H 0.085 0.915 9 C 0.127 3.873 10 C -0.238 4.238 11 C -0.023 4.023 12 C -0.281 4.281 13 C 0.571 3.429 14 O -0.576 6.576 15 N -0.743 5.743 16 C 0.134 3.866 17 C -0.044 4.044 18 C 0.011 3.989 19 C -0.052 4.052 20 N -0.459 5.459 21 C 0.207 3.793 22 N -0.477 5.477 23 C -0.034 4.034 24 C -0.126 4.126 25 C -0.135 4.135 26 C 0.104 3.896 27 C -0.063 4.063 28 C -0.178 4.178 29 H 0.285 0.715 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.396 0.604 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.174 0.826 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.313 -15.538 -11.173 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.472 4.472 8 H 0.103 0.897 9 C 0.124 3.876 10 C -0.258 4.258 11 C -0.042 4.042 12 C -0.286 4.286 13 C 0.365 3.635 14 O -0.458 6.458 15 N -0.396 5.396 16 C 0.010 3.990 17 C -0.082 4.082 18 C -0.119 4.119 19 C -0.184 4.184 20 N -0.143 5.143 21 C -0.056 4.056 22 N -0.196 5.196 23 C -0.073 4.073 24 C -0.164 4.164 25 C -0.173 4.173 26 C -0.019 4.019 27 C -0.082 4.082 28 C -0.197 4.197 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.231 0.769 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.192 0.808 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.573 -16.268 -11.082 25.732 hybrid contribution -0.981 1.379 0.175 1.702 sum -17.555 -14.889 -10.907 25.472 Atomic orbital electron populations 1.69758 1.07900 1.29842 1.32182 1.26089 0.94794 1.01838 0.91918 0.86185 0.81142 0.80286 0.78795 1.18076 1.19423 1.19732 1.19860 0.98429 0.91179 1.37714 0.89730 1.17794 0.90411 0.92176 0.87199 1.20715 1.04588 0.92651 1.07839 1.20375 0.92965 0.97148 0.93752 1.18940 1.04379 0.91137 1.14123 1.18563 0.78689 0.89555 0.76667 1.90633 1.66372 1.31779 1.56969 1.45917 1.32247 1.09030 1.52418 1.21039 0.93266 0.87269 0.97445 1.20021 0.96548 0.92052 0.99609 1.20489 0.90831 0.96458 1.04106 1.22300 0.99129 0.88229 1.08758 1.45307 1.09356 1.13667 1.45939 1.23269 0.80927 0.98186 1.03199 1.69959 1.31166 1.00818 1.17684 1.20190 0.99565 0.87080 1.00457 1.21685 0.93351 0.98549 1.02810 1.21904 0.99514 0.96605 0.99247 1.21966 0.84530 0.94117 1.01272 1.20483 0.97427 0.92560 0.97744 1.20970 0.99944 0.96882 1.01952 0.90367 0.88421 0.88112 0.76924 0.91302 0.92487 0.90225 0.90186 0.80849 0.88591 0.89347 0.91061 0.89916 0.89305 0.90592 0.89815 0.89290 0.89260 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.77 10.95 55.56 0.61 -18.16 16 2 C 0.07 1.76 5.14 -17.31 -0.09 1.67 16 3 Si 0.91 17.52 29.60 -169.99 -5.03 12.49 16 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 5 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 6 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.44 -11.25 9.04 -37.75 -0.34 -11.59 16 8 H 0.08 2.05 7.91 -52.49 -0.42 1.64 16 9 C 0.13 3.32 5.58 -106.80 -0.60 2.72 16 10 C -0.24 -5.94 9.73 -39.27 -0.38 -6.32 16 11 C -0.02 -0.57 9.52 -39.61 -0.38 -0.95 16 12 C -0.28 -6.70 5.89 -104.73 -0.62 -7.31 16 13 C 0.57 12.96 7.76 -12.42 -0.10 12.87 16 14 O -0.58 -14.74 16.32 5.29 0.09 -14.65 16 15 N -0.74 -13.45 5.50 -61.31 -0.34 -13.79 16 16 C 0.13 2.20 5.65 -4.04 -0.02 2.18 16 17 C -0.04 -0.55 5.89 -27.89 -0.16 -0.72 16 18 C 0.01 0.14 6.36 -82.72 -0.53 -0.39 16 19 C -0.05 -0.55 11.53 -16.76 -0.19 -0.74 16 20 N -0.46 -4.35 3.13 -113.74 -0.36 -4.71 16 21 C 0.21 2.34 7.65 -155.24 -1.19 1.15 16 22 N -0.48 -6.95 11.23 -6.88 -0.08 -7.02 16 23 C -0.03 -0.25 6.33 -27.51 -0.17 -0.43 16 24 C -0.13 -0.58 5.96 -26.45 -0.16 -0.73 16 25 C -0.14 -0.51 5.94 -26.51 -0.16 -0.66 16 26 C 0.10 0.54 6.98 -3.91 -0.03 0.51 16 27 C -0.06 -1.43 9.47 -39.61 -0.38 -1.81 16 28 C -0.18 -4.45 8.64 -39.27 -0.34 -4.79 16 29 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 30 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 31 H 0.10 2.40 7.63 -52.48 -0.40 2.00 16 32 H 0.40 6.23 6.47 -40.82 -0.26 5.97 16 33 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 41 H 0.08 0.24 8.14 -51.92 -0.42 -0.19 16 42 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.08 0.31 8.12 -51.93 -0.42 -0.11 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 1.71 6.37 -52.49 -0.33 1.38 16 47 H 0.12 3.01 6.16 -52.48 -0.32 2.69 16 LS Contribution 387.70 15.07 5.84 5.84 Total: -1.00 -33.03 387.70 -11.87 -44.91 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -6.79 Total: 10.42 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -5.82 Total: -15.33 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -0.16 Total: -43.68 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.09 Total: -14.65 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.03 -11.87 -44.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371166035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.801 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds