Wall clock time and date at job start Sat Apr 11 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86798 * 119.99920 * 2 1 4 4 H 1.48502 * 109.47495 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47468 * 300.00206 * 3 2 1 6 6 H 1.48504 * 109.47190 * 59.99833 * 3 2 1 7 7 C 1.40226 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99598 * 197.87539 * 7 2 1 9 9 C 1.41105 * 120.00158 * 17.87884 * 7 2 1 10 10 C 1.40889 * 120.10384 * 204.62271 * 9 7 2 11 11 C 1.36318 * 119.89070 * 180.02562 * 10 9 7 12 12 C 1.40016 * 120.10721 * 0.02562 * 11 10 9 13 13 C 1.47639 * 119.89107 * 179.97438 * 12 11 10 14 14 O 1.21585 * 120.00196 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99683 * 180.28038 * 13 12 11 16 16 C 1.46498 * 120.00217 * 179.72515 * 15 13 12 17 17 C 1.53001 * 109.47362 * 179.97438 * 16 15 13 18 18 C 1.50694 * 109.47120 * 179.97438 * 17 16 15 19 19 C 1.34852 * 125.96705 * 124.99792 * 18 17 16 20 20 N 1.36307 * 106.69287 * 179.97438 * 19 18 17 21 21 C 1.35427 * 107.39944 * 0.04984 * 20 19 18 22 22 N 1.30088 * 108.62476 * 359.65839 * 21 20 19 23 23 C 1.51040 * 123.97835 * 179.87979 * 21 20 19 24 24 C 1.53398 * 108.21242 * 344.04506 * 23 21 20 25 25 C 1.53150 * 109.23573 * 48.83259 * 24 23 21 26 26 C 1.46479 * 127.77924 * 180.02562 * 20 19 18 27 27 C 1.40005 * 120.20854 * 0.23546 * 12 11 10 28 28 C 1.36319 * 120.10715 * 359.47613 * 27 12 11 29 29 H 0.97003 * 119.99934 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.05038 * 0.02562 * 10 9 7 31 31 H 1.08004 * 119.94373 * 180.02562 * 11 10 9 32 32 H 0.96998 * 119.99710 * 359.71759 * 15 13 12 33 33 H 1.09007 * 109.46852 * 299.99474 * 16 15 13 34 34 H 1.08996 * 109.47335 * 59.98659 * 16 15 13 35 35 H 1.08993 * 109.46918 * 299.99587 * 17 16 15 36 36 H 1.09000 * 109.46941 * 59.99630 * 17 16 15 37 37 H 1.08001 * 126.65463 * 359.97438 * 19 18 17 38 38 H 1.09007 * 109.71281 * 224.36142 * 23 21 20 39 39 H 1.09005 * 109.74856 * 103.75026 * 23 21 20 40 40 H 1.09003 * 109.50860 * 288.90059 * 24 23 21 41 41 H 1.09008 * 109.50800 * 168.75964 * 24 23 21 42 42 H 1.09005 * 109.46118 * 170.50824 * 25 24 23 43 43 H 1.08996 * 109.46402 * 50.52171 * 25 24 23 44 44 H 1.08997 * 109.57707 * 282.67022 * 26 20 19 45 45 H 1.09001 * 109.58013 * 43.07907 * 26 20 19 46 46 H 1.07998 * 119.94664 * 179.72730 * 27 12 11 47 47 H 1.08004 * 120.05629 * 180.23532 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7005 1.3465 0.0006 5 1 1.8817 2.3965 -1.2124 6 1 1.8817 2.3965 1.2125 7 6 2.0076 -1.2144 0.0005 8 1 3.0485 -1.2367 0.2877 9 6 1.3532 -2.4071 -0.3741 10 6 1.8269 -3.6494 0.0920 11 6 1.1918 -4.7990 -0.2731 12 6 0.0707 -4.7465 -1.1102 13 6 -0.6133 -5.9946 -1.5031 14 8 -0.2026 -7.0657 -1.1001 15 7 -1.6892 -5.9470 -2.3134 16 6 -2.3644 -7.1858 -2.7081 17 6 -3.5457 -6.8539 -3.6220 18 6 -4.2397 -8.1283 -4.0285 19 6 -5.5497 -8.4035 -3.8652 20 7 -5.7527 -9.6540 -4.3682 21 6 -4.5600 -10.1061 -4.8231 22 7 -3.6628 -9.1858 -4.6223 23 6 -4.3572 -11.4621 -5.4568 24 6 -5.5761 -12.3328 -5.1264 25 6 -6.8549 -11.5485 -5.4346 26 6 -7.0089 -10.4052 -4.4253 27 6 -0.4005 -3.5148 -1.5803 28 6 0.2246 -2.3594 -1.2159 29 1 -0.4850 0.8401 0.0004 30 1 2.6919 -3.6908 0.7374 31 1 1.5539 -5.7518 0.0841 32 1 -2.0166 -5.0925 -2.6351 33 1 -1.6626 -7.8285 -3.2398 34 1 -2.7269 -7.7013 -1.8188 35 1 -4.2473 -6.2115 -3.0900 36 1 -3.1834 -6.3383 -4.5114 37 1 -6.2937 -7.7583 -3.4218 38 1 -3.4553 -11.9243 -5.0555 39 1 -4.2648 -11.3534 -6.5375 40 1 -5.5578 -12.5986 -4.0695 41 1 -5.5504 -13.2395 -5.7311 42 1 -7.7152 -12.2141 -5.3634 43 1 -6.7954 -11.1384 -6.4427 44 1 -7.2348 -10.8145 -3.4407 45 1 -7.8157 -9.7444 -4.7424 46 1 -1.2629 -3.4796 -2.2294 47 1 -0.1419 -1.4094 -1.5760 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371166035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:06 Heat of formation + Delta-G solvation = 2.524838 kcal Electronic energy + Delta-G solvation = -27197.942228 eV Core-core repulsion = 23344.283942 eV Total energy + Delta-G solvation = -3853.658286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.28371 -40.75868 -38.93657 -37.75664 -36.21426 -35.66189 -34.17582 -33.07599 -31.78608 -31.28444 -29.92502 -29.03882 -27.58816 -25.35654 -24.24262 -23.35548 -23.08773 -22.68016 -21.54115 -20.84461 -19.93087 -19.35867 -18.43484 -17.70637 -17.30961 -17.02308 -16.65539 -16.48041 -15.74380 -15.50929 -15.47247 -15.20374 -15.09166 -14.96792 -14.71416 -14.55026 -14.45719 -14.34446 -13.89757 -13.66516 -13.41364 -13.22682 -13.14740 -12.83918 -12.64261 -12.58315 -12.42074 -12.35070 -12.06072 -11.92977 -11.87201 -11.75422 -11.36448 -11.11465 -10.88925 -10.70890 -10.45068 -10.07093 -9.56451 -9.39842 -9.17585 -8.78569 -6.47305 0.44672 1.07809 1.15960 1.39634 1.43280 1.56558 1.89087 2.03148 2.13027 2.19127 2.45493 2.79403 3.34030 3.62290 3.69983 3.71901 3.80451 3.99501 4.12800 4.17947 4.24802 4.33535 4.34952 4.35615 4.43847 4.45489 4.50879 4.63264 4.67975 4.83569 4.92144 4.93086 4.96991 5.01916 5.04145 5.06262 5.15296 5.16876 5.27417 5.31096 5.39556 5.54966 5.60546 5.80238 5.83332 5.95651 6.00468 6.23360 6.30246 6.54789 6.73810 6.78003 6.90003 7.18218 7.45374 8.17063 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029511 B = 0.001668 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.582366 B =16787.307940 C =17434.513716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.259 1.259 6 H -0.263 1.263 7 C -0.473 4.473 8 H 0.085 0.915 9 C 0.100 3.900 10 C -0.252 4.252 11 C -0.035 4.035 12 C -0.293 4.293 13 C 0.569 3.431 14 O -0.611 6.611 15 N -0.723 5.723 16 C 0.142 3.858 17 C -0.030 4.030 18 C -0.029 4.029 19 C -0.041 4.041 20 N -0.456 5.456 21 C 0.194 3.806 22 N -0.530 5.530 23 C -0.037 4.037 24 C -0.120 4.120 25 C -0.130 4.130 26 C 0.094 3.906 27 C -0.052 4.052 28 C -0.196 4.196 29 H 0.297 0.703 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.410 0.590 33 H 0.042 0.958 34 H 0.044 0.956 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.205 0.795 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.117 0.883 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.127 0.873 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.926 -14.977 -12.127 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.181 1.181 5 H -0.184 1.184 6 H -0.188 1.188 7 C -0.500 4.500 8 H 0.103 0.897 9 C 0.097 3.903 10 C -0.272 4.272 11 C -0.054 4.054 12 C -0.298 4.298 13 C 0.362 3.638 14 O -0.496 6.496 15 N -0.375 5.375 16 C 0.018 3.982 17 C -0.068 4.068 18 C -0.158 4.158 19 C -0.175 4.175 20 N -0.139 5.139 21 C -0.069 4.069 22 N -0.250 5.250 23 C -0.076 4.076 24 C -0.158 4.158 25 C -0.168 4.168 26 C -0.027 4.027 27 C -0.071 4.071 28 C -0.216 4.216 29 H 0.109 0.891 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.247 0.753 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.222 0.778 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.122 0.878 42 H 0.135 0.865 43 H 0.092 0.908 44 H 0.113 0.887 45 H 0.127 0.873 46 H 0.144 0.856 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.246 -15.722 -12.064 27.625 hybrid contribution -0.239 1.129 0.470 1.246 sum -19.485 -14.593 -11.594 26.964 Atomic orbital electron populations 1.69766 1.09222 1.31605 1.31483 1.26931 0.95565 1.04810 0.90800 0.85058 0.79411 0.75452 0.79277 1.18134 1.18366 1.18804 1.20134 0.98748 0.92200 1.38894 0.89714 1.18162 0.91334 0.92846 0.87973 1.20845 1.05174 0.92710 1.08450 1.20512 0.93591 0.97034 0.94250 1.19167 1.04386 0.92124 1.14096 1.18493 0.79556 0.88580 0.77138 1.90610 1.67665 1.32750 1.58589 1.45745 1.30679 1.10498 1.50584 1.21020 0.93907 0.85909 0.97344 1.19917 0.95301 0.92723 0.98883 1.20664 0.92226 0.96737 1.06199 1.22739 0.98737 0.88759 1.07257 1.45608 1.10253 1.13412 1.44587 1.23861 0.81276 0.98828 1.02959 1.69884 1.33353 1.02283 1.19455 1.20363 1.00807 0.85887 1.00532 1.21685 0.92418 0.98830 1.02897 1.21931 0.99956 0.96350 0.98531 1.22369 0.83062 0.94695 1.02558 1.20742 0.97878 0.91318 0.97198 1.21015 1.00458 0.97409 1.02691 0.89128 0.87784 0.88191 0.75254 0.93940 0.93741 0.87562 0.89976 0.77841 0.89499 0.88637 0.91562 0.87777 0.86492 0.90850 0.88693 0.87342 0.85554 0.86601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.27 10.95 21.87 0.24 -38.03 16 2 C 0.04 1.78 5.14 85.35 0.44 2.22 16 3 Si 0.99 35.07 29.60 68.60 2.03 37.10 16 4 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 5 H -0.26 -8.75 7.11 99.48 0.71 -8.05 16 6 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 7 C -0.47 -24.25 9.04 23.46 0.21 -24.03 16 8 H 0.08 4.19 7.91 -2.91 -0.02 4.17 16 9 C 0.10 5.32 5.58 -21.28 -0.12 5.20 16 10 C -0.25 -12.96 9.73 22.47 0.22 -12.74 16 11 C -0.03 -1.75 9.52 22.25 0.21 -1.54 16 12 C -0.29 -14.10 5.89 -19.94 -0.12 -14.22 16 13 C 0.57 26.11 7.76 86.73 0.67 26.79 16 14 O -0.61 -32.19 16.32 -3.98 -0.07 -32.25 16 15 N -0.72 -25.86 5.50 -466.16 -2.57 -28.43 16 16 C 0.14 4.72 5.65 86.38 0.49 5.21 16 17 C -0.03 -0.73 5.89 29.85 0.18 -0.55 16 18 C -0.03 -0.77 6.36 41.40 0.26 -0.51 16 19 C -0.04 -0.80 11.53 83.22 0.96 0.16 16 20 N -0.46 -7.92 3.13 -513.78 -1.61 -9.53 16 21 C 0.19 4.35 7.65 138.23 1.06 5.40 16 22 N -0.53 -15.81 11.23 -175.69 -1.97 -17.78 16 23 C -0.04 -0.53 6.33 30.09 0.19 -0.34 16 24 C -0.12 -0.86 5.96 30.78 0.18 -0.68 16 25 C -0.13 -0.59 5.94 30.74 0.18 -0.40 16 26 C 0.09 0.71 6.98 86.48 0.60 1.31 16 27 C -0.05 -2.37 9.47 22.25 0.21 -2.15 16 28 C -0.20 -9.88 8.64 22.47 0.19 -9.68 16 29 H 0.30 12.58 8.29 -92.71 -0.77 11.81 16 30 H 0.10 5.02 8.06 -2.91 -0.02 4.99 16 31 H 0.10 4.96 7.63 -2.91 -0.02 4.93 16 32 H 0.41 12.23 6.47 -92.71 -0.60 11.63 16 33 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.11 1.99 8.11 -2.39 -0.02 1.97 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.20 2.48 8.06 -2.91 -0.02 2.45 16 38 H 0.09 1.36 8.14 -2.38 -0.02 1.35 16 39 H 0.10 1.19 8.14 -2.38 -0.02 1.18 16 40 H 0.07 0.56 8.12 -2.39 -0.02 0.54 16 41 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 42 H 0.12 -0.07 8.14 -2.38 -0.02 -0.09 16 43 H 0.07 0.41 8.12 -2.39 -0.02 0.39 16 44 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.13 4.60 6.37 -2.91 -0.02 4.58 16 47 H 0.12 5.85 6.16 -2.91 -0.02 5.83 16 Total: -1.00 -74.54 387.70 2.47 -72.07 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: 0.39 Total: 37.42 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 6.03 Total: -20.56 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -5.91 Total: -93.78 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.07 Total: -32.25 kcal Atomic # 14 Polarization: 35.07 SS G_CDS: 2.03 Total: 37.10 kcal Total: -74.54 2.47 -72.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371166035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.595 kcal (2) G-P(sol) polarization free energy of solvation -74.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds