Wall clock time and date at job start Sat Apr 11 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99777 * 2 1 4 4 H 1.48505 * 109.47023 * 239.99854 * 3 2 1 5 5 H 1.48496 * 109.47577 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46949 * 120.00686 * 3 2 1 7 7 C 1.37875 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00205 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46701 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46645 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47398 * 54.99838 * 11 10 9 13 13 N 1.46897 * 109.47386 * 294.99613 * 11 10 9 14 14 C 1.50702 * 109.46854 * 174.99900 * 11 10 9 15 15 O 1.21279 * 120.00246 * 100.00441 * 14 11 10 16 16 N 1.34773 * 119.99897 * 279.99749 * 14 11 10 17 17 C 1.46508 * 120.00212 * 180.02562 * 16 14 11 18 18 H 1.09005 * 109.46208 * 324.99853 * 17 16 14 19 19 C 1.50702 * 109.47242 * 205.00617 * 17 16 14 20 20 C 1.38236 * 119.99504 * 319.71984 * 19 17 16 21 21 C 1.38237 * 119.99702 * 179.79057 * 20 19 17 22 22 C 1.38238 * 119.99594 * 0.44197 * 21 20 19 23 23 C 1.38230 * 120.00164 * 359.81591 * 22 21 20 24 24 C 1.38229 * 119.99958 * 139.99957 * 19 17 16 25 25 C 1.50696 * 109.46968 * 84.99832 * 17 16 14 26 26 C 1.38651 * 120.79136 * 39.72622 * 25 17 16 27 27 C 1.38197 * 119.16286 * 180.25000 * 26 25 17 28 28 N 1.31867 * 120.76721 * 0.02562 * 27 26 25 29 29 C 1.31874 * 121.72409 * 359.97438 * 28 27 26 30 30 C 1.38200 * 120.76532 * 359.97438 * 29 28 27 31 31 H 0.96996 * 119.99592 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.46950 * 60.00711 * 9 7 2 33 33 H 1.08997 * 109.46927 * 300.00264 * 9 7 2 34 34 H 1.08993 * 109.47390 * 60.00305 * 10 9 7 35 35 H 1.08997 * 109.47094 * 299.99486 * 10 9 7 36 36 H 1.00898 * 111.00298 * 300.00535 * 13 11 10 37 37 H 1.00899 * 110.99914 * 63.95615 * 13 11 10 38 38 H 0.97001 * 120.00590 * 0.02562 * 16 14 11 39 39 H 1.07999 * 120.00256 * 0.02562 * 20 19 17 40 40 H 1.08002 * 120.00399 * 180.27691 * 21 20 19 41 41 H 1.08005 * 119.99255 * 179.83072 * 22 21 20 42 42 H 1.07997 * 119.99740 * 180.02562 * 23 22 21 43 43 H 1.08003 * 120.00124 * 359.97438 * 24 19 17 44 44 H 1.08006 * 120.41697 * 0.24579 * 26 25 17 45 45 H 1.08001 * 119.61607 * 180.02562 * 27 26 25 46 46 H 1.07997 * 119.61970 * 180.02562 * 29 28 27 47 47 H 1.07998 * 120.42210 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 1 0.7878 -5.0072 -0.8414 13 7 0.7290 -5.1182 1.2556 14 6 2.4548 -6.1299 -0.1237 15 8 2.7870 -6.7532 0.8621 16 7 2.9572 -6.4593 -1.3302 17 6 3.9043 -7.5706 -1.4508 18 1 4.5394 -7.6042 -0.5655 19 6 4.7596 -7.3711 -2.6754 20 6 4.1940 -6.8949 -3.8433 21 6 4.9794 -6.7078 -4.9654 22 6 6.3286 -7.0055 -4.9220 23 6 6.8931 -7.4868 -3.7556 24 6 6.1086 -7.6698 -2.6323 25 6 3.1449 -8.8664 -1.5739 26 6 1.9890 -8.9421 -2.3357 27 6 1.3164 -10.1464 -2.4211 28 7 1.7619 -11.2142 -1.7885 29 6 2.8574 -11.1790 -1.0552 30 6 3.5831 -10.0103 -0.9241 31 1 -0.4849 0.8400 0.0004 32 1 0.6241 -2.5567 -0.8903 33 1 0.6247 -2.5570 0.8896 34 1 2.8719 -3.6044 0.8894 35 1 2.8719 -3.6044 -0.8905 36 1 1.3491 -5.1022 2.0514 37 1 0.0243 -4.4001 1.3320 38 1 2.6919 -5.9606 -2.1187 39 1 3.1392 -6.6655 -3.8781 40 1 4.5385 -6.3315 -5.8767 41 1 6.9417 -6.8619 -5.7996 42 1 7.9473 -7.7190 -3.7217 43 1 6.5496 -8.0457 -1.7209 44 1 1.6188 -8.0709 -2.8558 45 1 0.4154 -10.2137 -3.0129 46 1 3.1918 -12.0742 -0.5520 47 1 4.4792 -9.9877 -0.3218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424134916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:24 Heat of formation + Delta-G solvation = 14.124442 kcal Electronic energy + Delta-G solvation = -28671.205862 eV Core-core repulsion = 24818.050573 eV Total energy + Delta-G solvation = -3853.155290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92216 -39.59263 -39.15038 -36.04523 -35.28280 -32.89845 -32.50565 -31.42134 -31.24941 -31.06524 -29.92148 -27.41197 -25.95256 -24.02462 -23.58348 -22.91588 -22.78762 -21.21176 -20.55620 -19.86550 -17.81430 -17.23628 -17.08236 -16.57251 -16.20713 -15.95437 -15.63645 -15.30324 -14.83998 -14.68860 -14.56496 -14.44840 -14.13819 -13.86122 -13.81450 -13.63865 -13.50375 -13.18503 -13.00170 -12.90868 -12.49529 -12.19338 -11.79158 -11.71355 -11.52685 -11.32471 -11.11605 -10.94271 -10.73881 -10.04734 -10.02543 -9.82012 -9.72444 -9.34699 -9.30663 -9.26494 -9.23686 -9.16846 -9.01169 -8.46493 -8.22971 -6.11141 -4.14466 0.88195 1.00706 1.11219 1.19017 2.82793 3.07540 3.26375 3.31460 3.33765 3.49450 3.67121 4.31646 4.32619 4.37005 4.50297 4.52512 4.69569 4.70578 4.82600 4.92198 4.97210 5.00984 5.12644 5.16773 5.20556 5.24995 5.37135 5.45070 5.52062 5.61922 5.63997 5.70345 5.72159 5.81129 6.07320 6.13069 6.16309 6.22439 6.23950 6.43394 6.48389 6.53981 6.67346 6.83156 7.34776 7.47719 7.55694 7.61520 7.82621 7.85301 7.86881 8.27807 8.35272 8.91213 9.50554 10.99693 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010833 B = 0.002983 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.069005 B = 9385.010166 C =11082.920111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.137 4.137 11 C 0.076 3.924 12 H 0.096 0.904 13 N -0.830 5.830 14 C 0.529 3.471 15 O -0.531 6.531 16 N -0.728 5.728 17 C 0.228 3.772 18 H 0.107 0.893 19 C -0.088 4.088 20 C -0.108 4.108 21 C -0.114 4.114 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.104 4.104 25 C -0.040 4.040 26 C -0.154 4.154 27 C 0.098 3.902 28 N -0.487 5.487 29 C 0.097 3.903 30 C -0.156 4.156 31 H 0.262 0.738 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.346 0.654 37 H 0.355 0.645 38 H 0.402 0.598 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.131 0.869 45 H 0.155 0.845 46 H 0.155 0.845 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.799 -18.989 -9.522 23.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.177 4.177 11 C -0.039 4.039 12 H 0.114 0.886 13 N -0.362 5.362 14 C 0.316 3.684 15 O -0.406 6.406 16 N -0.382 5.382 17 C 0.122 3.878 18 H 0.125 0.875 19 C -0.089 4.089 20 C -0.126 4.126 21 C -0.132 4.132 22 C -0.135 4.135 23 C -0.135 4.135 24 C -0.122 4.122 25 C -0.050 4.050 26 C -0.174 4.174 27 C -0.059 4.059 28 N -0.196 5.196 29 C -0.059 4.059 30 C -0.177 4.177 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.159 0.841 37 H 0.170 0.830 38 H 0.238 0.762 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.149 0.851 45 H 0.172 0.828 46 H 0.172 0.828 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.164 -20.800 -9.120 24.491 hybrid contribution 1.191 3.063 -0.152 3.290 sum 10.355 -17.737 -9.271 22.535 Atomic orbital electron populations 1.69939 1.06011 1.26926 1.50299 1.25007 0.94870 0.99290 0.95090 0.86645 0.79605 0.83022 0.78680 1.20206 1.21194 1.20217 1.21138 0.92981 0.90897 1.51313 0.92778 1.19093 0.93677 0.91070 0.97355 1.22389 0.99889 0.93904 1.01538 1.21461 0.94574 0.92129 0.95710 0.88590 1.58737 1.18448 1.55938 1.03118 1.20972 0.80897 0.84259 0.82228 1.90640 1.59642 1.53273 1.37010 1.46121 1.47147 1.34232 1.10651 1.18516 0.89028 0.83335 0.96884 0.87498 1.19707 0.94119 1.00676 0.94363 1.20945 0.99946 0.99191 0.92515 1.21156 0.94064 0.99599 0.98380 1.21217 0.95278 0.98888 0.98135 1.21138 0.99881 0.99478 0.92987 1.20987 0.92731 0.99606 0.98897 1.20504 0.94894 0.95058 0.94498 1.21904 0.95978 0.99507 0.99991 1.22717 0.98808 0.88142 0.96241 1.67653 1.13385 1.31098 1.07485 1.22705 0.90713 0.97449 0.95075 1.21966 1.01756 0.93433 1.00518 0.92799 0.96334 0.96397 0.92645 0.92515 0.84115 0.82956 0.76166 0.85990 0.85659 0.85932 0.85788 0.85742 0.85137 0.82793 0.82785 0.84825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.23 9.11 -34.44 -0.31 -14.55 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.03 0.60 4.74 -27.88 -0.13 0.47 16 10 C -0.14 -2.63 4.78 -26.73 -0.13 -2.75 16 11 C 0.08 1.26 3.21 -68.86 -0.22 1.04 16 12 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 13 N -0.83 -14.09 8.94 -5.65 -0.05 -14.14 16 14 C 0.53 8.37 7.04 -10.99 -0.08 8.29 16 15 O -0.53 -9.95 15.91 5.56 0.09 -9.86 16 16 N -0.73 -8.93 4.35 -56.06 -0.24 -9.17 16 17 C 0.23 2.56 2.41 -70.23 -0.17 2.39 16 18 H 0.11 1.32 7.34 -51.93 -0.38 0.94 16 19 C -0.09 -0.87 4.94 -104.63 -0.52 -1.39 16 20 C -0.11 -0.99 8.90 -39.58 -0.35 -1.34 16 21 C -0.11 -0.97 10.05 -39.58 -0.40 -1.36 16 22 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 23 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 24 C -0.10 -0.95 9.67 -39.59 -0.38 -1.33 16 25 C -0.04 -0.45 4.92 -104.32 -0.51 -0.97 16 26 C -0.15 -1.66 9.27 -39.44 -0.37 -2.03 16 27 C 0.10 1.07 11.18 -17.55 -0.20 0.88 16 28 N -0.49 -5.97 10.36 -13.26 -0.14 -6.11 16 29 C 0.10 1.05 11.18 -17.55 -0.20 0.85 16 30 C -0.16 -1.68 9.78 -39.44 -0.39 -2.06 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.35 5.96 8.58 -39.29 -0.34 5.63 16 37 H 0.35 6.05 7.55 -39.29 -0.30 5.75 16 38 H 0.40 4.22 6.89 -40.82 -0.28 3.94 16 39 H 0.12 0.96 6.59 -52.49 -0.35 0.61 16 40 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 42 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.12 0.95 8.04 -52.48 -0.42 0.53 16 44 H 0.13 1.19 7.45 -52.48 -0.39 0.80 16 45 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 46 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 47 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 396.70 15.07 5.98 5.98 Total: -1.00 -33.15 396.70 -10.47 -43.62 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -6.58 Total: 13.68 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -5.24 Total: -15.04 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.30 Total: -54.46 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.15 -10.47 -43.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424134916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.743 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds