Wall clock time and date at job start Sat Apr 11 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99777 * 2 1 4 4 H 1.48505 * 109.47023 * 239.99854 * 3 2 1 5 5 H 1.48496 * 109.47577 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46949 * 120.00686 * 3 2 1 7 7 C 1.37875 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00205 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46701 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46645 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47398 * 54.99838 * 11 10 9 13 13 N 1.46897 * 109.47386 * 294.99613 * 11 10 9 14 14 C 1.50702 * 109.46854 * 174.99900 * 11 10 9 15 15 O 1.21279 * 120.00246 * 100.00441 * 14 11 10 16 16 N 1.34773 * 119.99897 * 279.99749 * 14 11 10 17 17 C 1.46508 * 120.00212 * 180.02562 * 16 14 11 18 18 H 1.09005 * 109.46208 * 324.99853 * 17 16 14 19 19 C 1.50702 * 109.47242 * 205.00617 * 17 16 14 20 20 C 1.38236 * 119.99504 * 319.71984 * 19 17 16 21 21 C 1.38237 * 119.99702 * 179.79057 * 20 19 17 22 22 C 1.38238 * 119.99594 * 0.44197 * 21 20 19 23 23 C 1.38230 * 120.00164 * 359.81591 * 22 21 20 24 24 C 1.38229 * 119.99958 * 139.99957 * 19 17 16 25 25 C 1.50696 * 109.46968 * 84.99832 * 17 16 14 26 26 C 1.38651 * 120.79136 * 39.72622 * 25 17 16 27 27 C 1.38197 * 119.16286 * 180.25000 * 26 25 17 28 28 N 1.31867 * 120.76721 * 0.02562 * 27 26 25 29 29 C 1.31874 * 121.72409 * 359.97438 * 28 27 26 30 30 C 1.38200 * 120.76532 * 359.97438 * 29 28 27 31 31 H 0.96996 * 119.99592 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.46950 * 60.00711 * 9 7 2 33 33 H 1.08997 * 109.46927 * 300.00264 * 9 7 2 34 34 H 1.08993 * 109.47390 * 60.00305 * 10 9 7 35 35 H 1.08997 * 109.47094 * 299.99486 * 10 9 7 36 36 H 1.00898 * 111.00298 * 300.00535 * 13 11 10 37 37 H 1.00899 * 110.99914 * 63.95615 * 13 11 10 38 38 H 0.97001 * 120.00590 * 0.02562 * 16 14 11 39 39 H 1.07999 * 120.00256 * 0.02562 * 20 19 17 40 40 H 1.08002 * 120.00399 * 180.27691 * 21 20 19 41 41 H 1.08005 * 119.99255 * 179.83072 * 22 21 20 42 42 H 1.07997 * 119.99740 * 180.02562 * 23 22 21 43 43 H 1.08003 * 120.00124 * 359.97438 * 24 19 17 44 44 H 1.08006 * 120.41697 * 0.24579 * 26 25 17 45 45 H 1.08001 * 119.61607 * 180.02562 * 27 26 25 46 46 H 1.07997 * 119.61970 * 180.02562 * 29 28 27 47 47 H 1.07998 * 120.42210 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 1 0.7878 -5.0072 -0.8414 13 7 0.7290 -5.1182 1.2556 14 6 2.4548 -6.1299 -0.1237 15 8 2.7870 -6.7532 0.8621 16 7 2.9572 -6.4593 -1.3302 17 6 3.9043 -7.5706 -1.4508 18 1 4.5394 -7.6042 -0.5655 19 6 4.7596 -7.3711 -2.6754 20 6 4.1940 -6.8949 -3.8433 21 6 4.9794 -6.7078 -4.9654 22 6 6.3286 -7.0055 -4.9220 23 6 6.8931 -7.4868 -3.7556 24 6 6.1086 -7.6698 -2.6323 25 6 3.1449 -8.8664 -1.5739 26 6 1.9890 -8.9421 -2.3357 27 6 1.3164 -10.1464 -2.4211 28 7 1.7619 -11.2142 -1.7885 29 6 2.8574 -11.1790 -1.0552 30 6 3.5831 -10.0103 -0.9241 31 1 -0.4849 0.8400 0.0004 32 1 0.6241 -2.5567 -0.8903 33 1 0.6247 -2.5570 0.8896 34 1 2.8719 -3.6044 0.8894 35 1 2.8719 -3.6044 -0.8905 36 1 1.3491 -5.1022 2.0514 37 1 0.0243 -4.4001 1.3320 38 1 2.6919 -5.9606 -2.1187 39 1 3.1392 -6.6655 -3.8781 40 1 4.5385 -6.3315 -5.8767 41 1 6.9417 -6.8619 -5.7996 42 1 7.9473 -7.7190 -3.7217 43 1 6.5496 -8.0457 -1.7209 44 1 1.6188 -8.0709 -2.8558 45 1 0.4154 -10.2137 -3.0129 46 1 3.1918 -12.0742 -0.5520 47 1 4.4792 -9.9877 -0.3218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424134916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:23 Heat of formation + Delta-G solvation = -6.587318 kcal Electronic energy + Delta-G solvation = -28672.103991 eV Core-core repulsion = 24818.050573 eV Total energy + Delta-G solvation = -3854.053419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.83167 -40.61284 -39.97996 -37.28637 -36.56146 -34.84331 -33.49644 -32.18427 -31.99483 -31.74499 -31.68568 -28.63312 -27.30498 -25.51085 -24.51700 -23.70818 -23.49718 -22.50740 -21.68524 -21.12559 -19.06930 -18.26922 -18.11509 -17.91713 -17.37101 -16.79276 -16.57413 -16.41037 -16.15295 -15.83955 -15.74249 -15.73279 -15.21650 -14.87182 -14.78299 -14.57068 -14.51204 -14.28474 -14.23381 -13.96831 -13.71613 -13.45803 -13.29699 -12.93241 -12.68195 -12.55679 -12.52884 -12.20426 -11.94935 -11.81495 -11.73134 -11.32223 -10.92004 -10.66725 -10.55791 -10.54612 -10.26334 -10.08314 -9.84839 -9.72487 -9.64872 -8.21545 -6.31831 0.11595 0.20091 0.43787 0.47274 1.39753 1.41040 1.48975 1.55905 2.00710 2.39766 2.80445 2.86517 3.12172 3.50990 3.57766 3.65906 3.72307 3.78109 3.81208 4.02473 4.07256 4.11375 4.17576 4.21793 4.23131 4.28184 4.37106 4.58739 4.65130 4.66454 4.69929 4.82780 4.86463 4.96900 5.01391 5.07741 5.10170 5.16038 5.35502 5.46327 5.51953 5.60184 5.61279 5.65554 5.75005 5.80511 6.04027 6.06033 6.21055 6.42124 6.46122 6.83473 7.00650 7.14693 7.37278 8.88933 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010833 B = 0.002983 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.069005 B = 9385.010166 C =11082.920111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.031 3.969 10 C -0.120 4.120 11 C 0.082 3.918 12 H 0.110 0.890 13 N -0.830 5.830 14 C 0.533 3.467 15 O -0.562 6.562 16 N -0.712 5.712 17 C 0.234 3.766 18 H 0.094 0.906 19 C -0.100 4.100 20 C -0.118 4.118 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.116 4.116 25 C -0.051 4.051 26 C -0.161 4.161 27 C 0.087 3.913 28 N -0.510 5.510 29 C 0.089 3.911 30 C -0.165 4.165 31 H 0.264 0.736 32 H 0.003 0.997 33 H 0.002 0.998 34 H 0.044 0.956 35 H 0.066 0.934 36 H 0.344 0.656 37 H 0.353 0.647 38 H 0.412 0.588 39 H 0.131 0.869 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.133 0.867 44 H 0.144 0.856 45 H 0.175 0.825 46 H 0.178 0.822 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.105 -19.069 -10.802 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.072 0.928 9 C -0.006 4.006 10 C -0.160 4.160 11 C -0.033 4.033 12 H 0.128 0.872 13 N -0.362 5.362 14 C 0.320 3.680 15 O -0.440 6.440 16 N -0.365 5.365 17 C 0.129 3.871 18 H 0.112 0.888 19 C -0.101 4.101 20 C -0.137 4.137 21 C -0.141 4.141 22 C -0.139 4.139 23 C -0.140 4.140 24 C -0.134 4.134 25 C -0.061 4.061 26 C -0.181 4.181 27 C -0.069 4.069 28 N -0.220 5.220 29 C -0.067 4.067 30 C -0.185 4.185 31 H 0.073 0.927 32 H 0.022 0.978 33 H 0.020 0.980 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.157 0.843 37 H 0.168 0.832 38 H 0.250 0.750 39 H 0.149 0.851 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.162 0.838 43 H 0.151 0.849 44 H 0.162 0.838 45 H 0.192 0.808 46 H 0.195 0.805 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.484 -20.890 -10.438 25.598 hybrid contribution 0.808 3.049 0.205 3.161 sum 11.292 -17.841 -10.233 23.463 Atomic orbital electron populations 1.70052 1.07451 1.27817 1.51264 1.25845 0.95715 1.02899 0.94754 0.85622 0.78406 0.78741 0.79028 1.19178 1.20845 1.19701 1.21593 0.93333 0.92487 1.50965 0.92754 1.18956 0.93994 0.91919 0.95753 1.22128 0.98770 0.93689 1.01408 1.21400 0.94703 0.91163 0.96025 0.87192 1.58757 1.18396 1.55687 1.03319 1.20729 0.80654 0.83872 0.82789 1.90630 1.60710 1.54364 1.38253 1.45977 1.46412 1.34233 1.09877 1.18475 0.88605 0.82813 0.97187 0.88757 1.19650 0.94364 1.02032 0.94044 1.21129 1.00651 0.99309 0.92580 1.21443 0.94397 0.99431 0.98792 1.21561 0.95479 0.98056 0.98850 1.21433 1.00892 0.99028 0.92696 1.21207 0.92651 0.99773 0.99808 1.20619 0.95272 0.95237 0.94963 1.22091 0.95853 1.00062 1.00054 1.23108 0.99506 0.87990 0.96274 1.67687 1.14180 1.31823 1.08300 1.23127 0.90344 0.98393 0.94826 1.22212 1.02395 0.93355 1.00584 0.92730 0.97847 0.97982 0.93749 0.91567 0.84337 0.83186 0.74981 0.85094 0.83979 0.83854 0.83812 0.84896 0.83788 0.80797 0.80506 0.83343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.77 13.29 21.45 0.28 -53.49 16 2 C 0.01 0.36 5.46 84.65 0.46 0.82 16 3 Si 0.96 42.91 29.54 68.60 2.03 44.93 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -29.58 9.11 25.60 0.23 -29.35 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.03 1.49 4.74 29.85 0.14 1.63 16 10 C -0.12 -4.55 4.78 30.60 0.15 -4.40 16 11 C 0.08 2.67 3.21 44.17 0.14 2.81 16 12 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 13 N -0.83 -28.17 8.94 -171.80 -1.54 -29.71 16 14 C 0.53 16.51 7.04 87.66 0.62 17.12 16 15 O -0.56 -20.95 15.91 -3.03 -0.05 -21.00 16 16 N -0.71 -16.77 4.35 -449.67 -1.95 -18.72 16 17 C 0.23 5.09 2.41 43.50 0.10 5.19 16 18 H 0.09 2.30 7.34 -2.38 -0.02 2.29 16 19 C -0.10 -1.88 4.94 -19.87 -0.10 -1.98 16 20 C -0.12 -2.00 8.90 22.27 0.20 -1.80 16 21 C -0.12 -1.84 10.05 22.27 0.22 -1.61 16 22 C -0.12 -1.70 10.05 22.27 0.22 -1.47 16 23 C -0.12 -1.79 10.05 22.27 0.22 -1.56 16 24 C -0.12 -1.98 9.67 22.27 0.22 -1.76 16 25 C -0.05 -1.13 4.92 -19.67 -0.10 -1.23 16 26 C -0.16 -3.32 9.27 22.36 0.21 -3.11 16 27 C 0.09 1.84 11.18 84.68 0.95 2.79 16 28 N -0.51 -12.12 10.36 -195.85 -2.03 -14.15 16 29 C 0.09 1.85 11.18 84.68 0.95 2.80 16 30 C -0.17 -3.43 9.78 22.36 0.22 -3.21 16 31 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.00 0.10 6.87 -2.39 -0.02 0.08 16 34 H 0.04 1.77 8.14 -2.39 -0.02 1.76 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.34 11.94 8.58 -89.70 -0.77 11.17 16 37 H 0.35 12.16 7.55 -89.69 -0.68 11.48 16 38 H 0.41 8.06 6.89 -92.71 -0.64 7.42 16 39 H 0.13 1.84 6.59 -2.91 -0.02 1.82 16 40 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 42 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.13 1.91 8.04 -2.91 -0.02 1.89 16 44 H 0.14 2.44 7.45 -2.91 -0.02 2.41 16 45 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 46 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 47 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -70.23 396.70 0.73 -69.50 By element: Atomic # 1 Polarization: 42.03 SS G_CDS: -1.07 Total: 40.95 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 5.06 Total: -18.33 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -5.23 Total: -116.06 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.05 Total: -21.00 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -70.23 0.73 -69.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424134916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.916 kcal (2) G-P(sol) polarization free energy of solvation -70.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds