Wall clock time and date at job start Sat Apr 11 2020 05:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00173 * 2 1 4 4 H 1.48503 * 109.47231 * 270.00132 * 3 2 1 5 5 H 1.48508 * 109.47010 * 30.00115 * 3 2 1 6 6 H 1.48494 * 109.47398 * 150.00068 * 3 2 1 7 7 C 1.37887 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00125 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99417 * 0.02562 * 7 2 1 10 10 C 1.53011 * 109.46746 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47134 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46922 * 305.00135 * 11 10 9 13 13 N 1.46906 * 109.46907 * 65.00065 * 11 10 9 14 14 C 1.50698 * 109.47342 * 185.00123 * 11 10 9 15 15 O 1.21283 * 119.99975 * 260.00470 * 14 11 10 16 16 N 1.34773 * 120.00352 * 79.99610 * 14 11 10 17 17 C 1.46496 * 120.00079 * 180.02562 * 16 14 11 18 18 H 1.08995 * 109.47387 * 324.99853 * 17 16 14 19 19 C 1.50706 * 109.46890 * 205.00501 * 17 16 14 20 20 C 1.38237 * 119.99960 * 319.72154 * 19 17 16 21 21 C 1.38239 * 119.99941 * 179.78762 * 20 19 17 22 22 C 1.38231 * 119.99833 * 0.44904 * 21 20 19 23 23 C 1.38236 * 119.99843 * 359.80995 * 22 21 20 24 24 C 1.38227 * 120.00150 * 140.00595 * 19 17 16 25 25 C 1.50702 * 109.47216 * 85.00456 * 17 16 14 26 26 C 1.38658 * 120.78786 * 39.71545 * 25 17 16 27 27 C 1.38196 * 119.15870 * 179.75503 * 26 25 17 28 28 N 1.31871 * 120.76903 * 0.53439 * 27 26 25 29 29 C 1.31875 * 121.72160 * 359.74268 * 28 27 26 30 30 C 1.38203 * 120.76331 * 359.97131 * 29 28 27 31 31 H 0.96991 * 119.99848 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47779 * 60.00146 * 9 7 2 33 33 H 1.08998 * 109.47136 * 299.98973 * 9 7 2 34 34 H 1.09000 * 109.46772 * 59.99639 * 10 9 7 35 35 H 1.08994 * 109.46772 * 299.99892 * 10 9 7 36 36 H 1.00896 * 111.00309 * 59.99727 * 13 11 10 37 37 H 1.00902 * 110.99923 * 183.95891 * 13 11 10 38 38 H 0.97007 * 119.99625 * 0.02562 * 16 14 11 39 39 H 1.08001 * 119.99608 * 0.02562 * 20 19 17 40 40 H 1.07998 * 119.99889 * 180.27755 * 21 20 19 41 41 H 1.07998 * 120.00020 * 179.83223 * 22 21 20 42 42 H 1.08002 * 119.99717 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.00108 * 359.97107 * 24 19 17 44 44 H 1.07998 * 120.41544 * 0.02562 * 26 25 17 45 45 H 1.08002 * 119.61958 * 180.29371 * 27 26 25 46 46 H 1.08000 * 119.61573 * 179.97438 * 29 28 27 47 47 H 1.08003 * 120.41934 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 1 0.7884 -5.0075 0.8388 13 7 0.7281 -5.1177 -1.2584 14 6 2.4549 -6.1300 0.1196 15 8 2.7864 -6.7529 -0.8669 16 7 2.9582 -6.4598 1.3255 17 6 3.9061 -7.5704 1.4447 18 1 3.6445 -8.3498 0.7291 19 6 3.8487 -8.1318 2.8421 20 6 3.7355 -7.2802 3.9251 21 6 3.6785 -7.7954 5.2066 22 6 3.7440 -9.1617 5.4057 23 6 3.8626 -10.0130 4.3231 24 6 3.9152 -9.4981 3.0414 25 6 5.3001 -7.0739 1.1596 26 6 5.7217 -5.8370 1.6232 27 6 7.0089 -5.4172 1.3465 28 7 7.8283 -6.1732 0.6421 29 6 7.4597 -7.3523 0.1807 30 6 6.1897 -7.8406 0.4227 31 1 -0.4849 0.8400 0.0004 32 1 0.6247 -2.5564 -0.8919 33 1 0.6241 -2.5575 0.8881 34 1 2.8720 -3.6051 0.8873 35 1 2.8719 -3.6036 -0.8927 36 1 1.3476 -5.1015 -2.0546 37 1 0.1637 -5.9541 -1.2563 38 1 2.6929 -5.9617 2.1145 39 1 3.6878 -6.2125 3.7697 40 1 3.5856 -7.1302 6.0524 41 1 3.7022 -9.5641 6.4071 42 1 3.9134 -11.0806 4.4786 43 1 4.0078 -10.1632 2.1956 44 1 5.0539 -5.2115 2.1969 45 1 7.3466 -4.4571 1.7080 46 1 8.1585 -7.9432 -0.3929 47 1 5.8935 -8.8069 0.0418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424134918.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:27 Heat of formation + Delta-G solvation = 14.969268 kcal Electronic energy + Delta-G solvation = -28862.820844 eV Core-core repulsion = 25009.702189 eV Total energy + Delta-G solvation = -3853.118655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.95845 -39.63235 -39.25790 -36.01805 -35.13631 -32.84240 -32.52775 -31.42853 -31.26447 -31.10566 -30.12667 -27.34648 -25.92718 -23.96515 -23.44669 -22.92071 -22.81229 -21.18865 -20.53050 -19.87475 -17.82561 -17.24687 -17.01040 -16.53750 -16.17321 -15.96786 -15.66230 -15.45312 -15.25541 -14.86402 -14.50907 -14.38462 -14.21199 -13.81707 -13.80080 -13.66504 -13.57360 -13.35352 -12.98718 -12.60070 -12.35164 -12.04628 -11.76626 -11.58148 -11.56107 -11.38154 -10.91405 -10.72689 -10.57495 -10.22847 -9.88291 -9.79151 -9.70391 -9.40770 -9.31892 -9.28753 -9.20059 -9.08574 -9.02282 -8.38856 -8.23878 -5.95703 -3.97945 0.84384 1.02805 1.06637 1.18808 2.66660 3.06699 3.33871 3.40323 3.42927 3.43611 3.69968 4.29453 4.36318 4.47289 4.47393 4.50111 4.65030 4.70392 4.77254 4.81781 4.96519 5.01349 5.02102 5.12000 5.15363 5.33147 5.39891 5.47410 5.48651 5.58782 5.65550 5.66502 5.77503 5.84319 6.05955 6.08046 6.10065 6.16351 6.36164 6.40290 6.57416 6.60767 6.61972 7.04187 7.28377 7.49056 7.73203 7.75397 7.87349 7.93416 8.10471 8.19930 8.46065 9.09971 9.65407 11.15156 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010310 B = 0.003050 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.189487 B = 9179.002496 C = 9760.702897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.052 0.948 9 C 0.032 3.968 10 C -0.094 4.094 11 C 0.079 3.921 12 H 0.099 0.901 13 N -0.806 5.806 14 C 0.487 3.513 15 O -0.547 6.547 16 N -0.724 5.724 17 C 0.225 3.775 18 H 0.105 0.895 19 C -0.088 4.088 20 C -0.108 4.108 21 C -0.114 4.114 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.105 4.105 25 C -0.043 4.043 26 C -0.152 4.152 27 C 0.100 3.900 28 N -0.486 5.486 29 C 0.097 3.903 30 C -0.159 4.159 31 H 0.259 0.741 32 H 0.035 0.965 33 H 0.013 0.987 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.348 0.652 37 H 0.334 0.666 38 H 0.404 0.596 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.133 0.867 45 H 0.157 0.843 46 H 0.154 0.846 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.001 -21.658 9.769 25.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.132 4.132 11 C -0.036 4.036 12 H 0.116 0.884 13 N -0.334 5.334 14 C 0.273 3.727 15 O -0.423 6.423 16 N -0.377 5.377 17 C 0.120 3.880 18 H 0.123 0.877 19 C -0.089 4.089 20 C -0.127 4.127 21 C -0.132 4.132 22 C -0.136 4.136 23 C -0.135 4.135 24 C -0.123 4.123 25 C -0.053 4.053 26 C -0.172 4.172 27 C -0.056 4.056 28 N -0.195 5.195 29 C -0.060 4.060 30 C -0.179 4.179 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.031 0.969 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.162 0.838 37 H 0.146 0.854 38 H 0.240 0.760 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.150 0.850 45 H 0.174 0.826 46 H 0.172 0.828 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.541 -20.971 9.058 24.756 hybrid contribution 0.066 -0.026 0.458 0.463 sum 9.607 -20.997 9.516 24.975 Atomic orbital electron populations 1.69967 1.05949 1.26439 1.50776 1.24986 0.94796 0.99045 0.95447 0.86662 0.79835 0.83770 0.78116 1.20715 1.21280 1.19972 1.21265 0.92879 0.91288 1.50677 0.92999 1.19013 0.93519 0.89791 0.98208 1.21651 0.98822 0.92126 1.00615 1.21859 0.93446 0.93124 0.95214 0.88359 1.58991 1.26850 1.44296 1.03219 1.22873 0.81852 0.85660 0.82325 1.90653 1.60926 1.53906 1.36858 1.46310 1.45938 1.34592 1.10878 1.18552 0.85390 0.89890 0.94184 0.87670 1.19724 1.01473 0.94017 0.93671 1.20991 0.99646 0.99706 0.92319 1.21172 0.99544 0.95515 0.96940 1.21222 0.99634 0.93661 0.99035 1.21138 1.00034 0.99922 0.92436 1.20978 0.99677 0.94083 0.97576 1.20468 0.95314 0.94436 0.95074 1.21941 0.97611 0.96410 1.01215 1.22772 0.90017 0.98876 0.93970 1.67670 1.36875 1.05546 1.09389 1.22705 0.94374 0.92328 0.96620 1.21935 0.94980 1.01288 0.99690 0.93084 0.94681 0.96867 0.92950 0.92867 0.83777 0.85409 0.76012 0.85829 0.85593 0.85914 0.85799 0.85817 0.84955 0.82594 0.82832 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 10 C -0.09 -1.84 4.78 -26.73 -0.13 -1.96 16 11 C 0.08 1.28 3.15 -68.86 -0.22 1.06 16 12 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 13 N -0.81 -13.25 8.44 -5.65 -0.05 -13.30 16 14 C 0.49 7.24 7.02 -10.99 -0.08 7.17 16 15 O -0.55 -9.58 15.91 5.55 0.09 -9.49 16 16 N -0.72 -8.48 4.34 -56.07 -0.24 -8.72 16 17 C 0.23 2.44 2.41 -70.23 -0.17 2.27 16 18 H 0.11 1.22 7.34 -51.93 -0.38 0.84 16 19 C -0.09 -0.83 4.94 -104.62 -0.52 -1.34 16 20 C -0.11 -0.95 8.90 -39.58 -0.35 -1.30 16 21 C -0.11 -0.90 10.05 -39.58 -0.40 -1.30 16 22 C -0.12 -0.87 10.05 -39.58 -0.40 -1.26 16 23 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 24 C -0.10 -0.88 9.67 -39.59 -0.38 -1.26 16 25 C -0.04 -0.51 4.92 -104.32 -0.51 -1.02 16 26 C -0.15 -1.81 9.27 -39.44 -0.37 -2.18 16 27 C 0.10 1.25 11.18 -17.55 -0.20 1.05 16 28 N -0.49 -6.48 10.36 -13.25 -0.14 -6.61 16 29 C 0.10 1.11 11.18 -17.55 -0.20 0.91 16 30 C -0.16 -1.76 9.78 -39.45 -0.39 -2.15 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.35 5.87 8.58 -39.29 -0.34 5.53 16 37 H 0.33 4.74 9.06 -39.29 -0.36 4.39 16 38 H 0.40 4.07 6.89 -40.82 -0.28 3.78 16 39 H 0.12 0.97 6.60 -52.49 -0.35 0.63 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.12 0.86 8.04 -52.49 -0.42 0.43 16 44 H 0.13 1.42 7.46 -52.49 -0.39 1.03 16 45 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 46 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 398.66 15.07 6.01 6.01 Total: -1.00 -34.12 398.66 -10.54 -44.67 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -6.69 Total: 12.04 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -5.24 Total: -15.25 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.31 Total: -54.56 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.12 -10.54 -44.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424134918.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.637 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds