Wall clock time and date at job start Sat Apr 11 2020 05:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00173 * 2 1 4 4 H 1.48503 * 109.47231 * 270.00132 * 3 2 1 5 5 H 1.48508 * 109.47010 * 30.00115 * 3 2 1 6 6 H 1.48494 * 109.47398 * 150.00068 * 3 2 1 7 7 C 1.37887 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00125 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99417 * 0.02562 * 7 2 1 10 10 C 1.53011 * 109.46746 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47134 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46922 * 305.00135 * 11 10 9 13 13 N 1.46906 * 109.46907 * 65.00065 * 11 10 9 14 14 C 1.50698 * 109.47342 * 185.00123 * 11 10 9 15 15 O 1.21283 * 119.99975 * 260.00470 * 14 11 10 16 16 N 1.34773 * 120.00352 * 79.99610 * 14 11 10 17 17 C 1.46496 * 120.00079 * 180.02562 * 16 14 11 18 18 H 1.08995 * 109.47387 * 324.99853 * 17 16 14 19 19 C 1.50706 * 109.46890 * 205.00501 * 17 16 14 20 20 C 1.38237 * 119.99960 * 319.72154 * 19 17 16 21 21 C 1.38239 * 119.99941 * 179.78762 * 20 19 17 22 22 C 1.38231 * 119.99833 * 0.44904 * 21 20 19 23 23 C 1.38236 * 119.99843 * 359.80995 * 22 21 20 24 24 C 1.38227 * 120.00150 * 140.00595 * 19 17 16 25 25 C 1.50702 * 109.47216 * 85.00456 * 17 16 14 26 26 C 1.38658 * 120.78786 * 39.71545 * 25 17 16 27 27 C 1.38196 * 119.15870 * 179.75503 * 26 25 17 28 28 N 1.31871 * 120.76903 * 0.53439 * 27 26 25 29 29 C 1.31875 * 121.72160 * 359.74268 * 28 27 26 30 30 C 1.38203 * 120.76331 * 359.97131 * 29 28 27 31 31 H 0.96991 * 119.99848 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47779 * 60.00146 * 9 7 2 33 33 H 1.08998 * 109.47136 * 299.98973 * 9 7 2 34 34 H 1.09000 * 109.46772 * 59.99639 * 10 9 7 35 35 H 1.08994 * 109.46772 * 299.99892 * 10 9 7 36 36 H 1.00896 * 111.00309 * 59.99727 * 13 11 10 37 37 H 1.00902 * 110.99923 * 183.95891 * 13 11 10 38 38 H 0.97007 * 119.99625 * 0.02562 * 16 14 11 39 39 H 1.08001 * 119.99608 * 0.02562 * 20 19 17 40 40 H 1.07998 * 119.99889 * 180.27755 * 21 20 19 41 41 H 1.07998 * 120.00020 * 179.83223 * 22 21 20 42 42 H 1.08002 * 119.99717 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.00108 * 359.97107 * 24 19 17 44 44 H 1.07998 * 120.41544 * 0.02562 * 26 25 17 45 45 H 1.08002 * 119.61958 * 180.29371 * 27 26 25 46 46 H 1.08000 * 119.61573 * 179.97438 * 29 28 27 47 47 H 1.08003 * 120.41934 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 1 0.7884 -5.0075 0.8388 13 7 0.7281 -5.1177 -1.2584 14 6 2.4549 -6.1300 0.1196 15 8 2.7864 -6.7529 -0.8669 16 7 2.9582 -6.4598 1.3255 17 6 3.9061 -7.5704 1.4447 18 1 3.6445 -8.3498 0.7291 19 6 3.8487 -8.1318 2.8421 20 6 3.7355 -7.2802 3.9251 21 6 3.6785 -7.7954 5.2066 22 6 3.7440 -9.1617 5.4057 23 6 3.8626 -10.0130 4.3231 24 6 3.9152 -9.4981 3.0414 25 6 5.3001 -7.0739 1.1596 26 6 5.7217 -5.8370 1.6232 27 6 7.0089 -5.4172 1.3465 28 7 7.8283 -6.1732 0.6421 29 6 7.4597 -7.3523 0.1807 30 6 6.1897 -7.8406 0.4227 31 1 -0.4849 0.8400 0.0004 32 1 0.6247 -2.5564 -0.8919 33 1 0.6241 -2.5575 0.8881 34 1 2.8720 -3.6051 0.8873 35 1 2.8719 -3.6036 -0.8927 36 1 1.3476 -5.1015 -2.0546 37 1 0.1637 -5.9541 -1.2563 38 1 2.6929 -5.9617 2.1145 39 1 3.6878 -6.2125 3.7697 40 1 3.5856 -7.1302 6.0524 41 1 3.7022 -9.5641 6.4071 42 1 3.9134 -11.0806 4.4786 43 1 4.0078 -10.1632 2.1956 44 1 5.0539 -5.2115 2.1969 45 1 7.3466 -4.4571 1.7080 46 1 8.1585 -7.9432 -0.3929 47 1 5.8935 -8.8069 0.0418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424134918.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:26 Heat of formation + Delta-G solvation = -6.848907 kcal Electronic energy + Delta-G solvation = -28863.766951 eV Core-core repulsion = 25009.702189 eV Total energy + Delta-G solvation = -3854.064762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.88044 -40.68137 -40.01239 -37.10612 -36.53457 -34.81413 -33.52016 -32.21017 -32.03075 -31.91879 -31.74446 -28.56983 -27.33594 -25.34516 -24.52751 -23.71484 -23.50529 -22.46495 -21.68315 -21.14655 -18.94909 -18.22079 -18.11289 -17.98684 -17.29549 -17.01420 -16.73869 -16.51167 -16.36903 -15.96829 -15.83551 -15.50654 -15.15071 -15.04925 -14.71445 -14.61064 -14.30775 -14.26561 -14.25533 -13.83167 -13.70694 -13.46922 -13.29206 -12.81560 -12.56936 -12.52427 -12.26685 -12.21717 -11.96130 -11.78063 -11.66401 -11.26463 -11.02468 -10.76359 -10.61369 -10.48487 -10.29028 -10.11622 -9.86203 -9.78136 -9.59678 -8.13514 -6.23331 0.09143 0.16855 0.42057 0.45980 1.41620 1.42817 1.45681 1.53447 2.04892 2.44669 2.78164 2.84322 3.19808 3.48160 3.54609 3.56556 3.66621 3.74795 3.83316 4.00918 4.05217 4.09973 4.15391 4.18858 4.27524 4.30254 4.34809 4.57722 4.64152 4.68450 4.76713 4.83300 4.92642 4.94964 4.99923 5.08681 5.12431 5.24657 5.32507 5.51157 5.57751 5.59297 5.59940 5.72180 5.85068 5.99079 6.03727 6.07739 6.30917 6.36011 6.51342 6.95352 6.97975 7.05587 7.44734 8.97622 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010310 B = 0.003050 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.189487 B = 9179.002496 C = 9760.702897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.956 3.044 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.055 0.945 9 C 0.040 3.960 10 C -0.079 4.079 11 C 0.086 3.914 12 H 0.112 0.888 13 N -0.818 5.818 14 C 0.495 3.505 15 O -0.572 6.572 16 N -0.709 5.709 17 C 0.233 3.767 18 H 0.099 0.901 19 C -0.100 4.100 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.114 4.114 25 C -0.052 4.052 26 C -0.161 4.161 27 C 0.085 3.915 28 N -0.511 5.511 29 C 0.089 3.911 30 C -0.164 4.164 31 H 0.262 0.738 32 H 0.004 0.996 33 H -0.004 1.004 34 H 0.068 0.932 35 H 0.038 0.962 36 H 0.345 0.655 37 H 0.347 0.653 38 H 0.413 0.587 39 H 0.127 0.873 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.169 0.831 46 H 0.179 0.821 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.954 -22.632 11.045 27.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.781 3.219 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.580 4.580 8 H 0.073 0.927 9 C 0.003 3.997 10 C -0.118 4.118 11 C -0.030 4.030 12 H 0.129 0.871 13 N -0.347 5.347 14 C 0.280 3.720 15 O -0.451 6.451 16 N -0.362 5.362 17 C 0.127 3.873 18 H 0.117 0.883 19 C -0.100 4.100 20 C -0.138 4.138 21 C -0.141 4.141 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.132 4.132 25 C -0.062 4.062 26 C -0.181 4.181 27 C -0.071 4.071 28 N -0.220 5.220 29 C -0.068 4.068 30 C -0.184 4.184 31 H 0.070 0.930 32 H 0.023 0.977 33 H 0.014 0.986 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.251 0.749 39 H 0.145 0.855 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.153 0.847 44 H 0.158 0.842 45 H 0.186 0.814 46 H 0.196 0.804 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.504 -21.960 10.373 26.461 hybrid contribution -0.242 0.210 0.104 0.337 sum 10.262 -21.750 10.477 26.233 Atomic orbital electron populations 1.70094 1.07573 1.27467 1.51769 1.25864 0.95662 1.02891 0.95043 0.85587 0.78880 0.79181 0.78232 1.20394 1.20726 1.18698 1.21718 0.93309 0.92716 1.50274 0.92690 1.18818 0.93835 0.91248 0.95797 1.21365 0.97651 0.92089 1.00653 1.21651 0.93691 0.91981 0.95649 0.87065 1.58967 1.27171 1.45352 1.03217 1.22400 0.81543 0.85178 0.82837 1.90646 1.61760 1.54801 1.37932 1.46164 1.45239 1.34594 1.10172 1.18523 0.84534 0.89006 0.95197 0.88324 1.19635 1.03032 0.94625 0.92746 1.21125 1.00032 0.99960 0.92707 1.21430 0.99316 0.96261 0.97048 1.21560 0.98582 0.93516 1.00164 1.21443 0.99283 1.01182 0.92017 1.21199 0.99559 0.93870 0.98599 1.20652 0.95819 0.94560 0.95126 1.22074 0.97711 0.96785 1.01553 1.23056 0.90340 0.99517 0.94190 1.67688 1.37603 1.06499 1.10235 1.23170 0.95115 0.92065 0.96430 1.22223 0.94808 1.02118 0.99259 0.92953 0.97723 0.98560 0.91348 0.94306 0.84172 0.83944 0.74928 0.85497 0.84132 0.83809 0.83678 0.84738 0.84177 0.81405 0.80380 0.82947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.54 -30.42 9.11 25.60 0.23 -30.18 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.04 2.05 4.86 29.85 0.15 2.20 16 10 C -0.08 -3.10 4.78 30.60 0.15 -2.95 16 11 C 0.09 2.74 3.15 44.17 0.14 2.88 16 12 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 13 N -0.82 -27.00 8.44 -171.80 -1.45 -28.45 16 14 C 0.49 14.33 7.02 87.66 0.62 14.95 16 15 O -0.57 -19.71 15.91 -3.04 -0.05 -19.76 16 16 N -0.71 -15.83 4.34 -449.70 -1.95 -17.78 16 17 C 0.23 4.78 2.41 43.50 0.10 4.89 16 18 H 0.10 2.19 7.34 -2.39 -0.02 2.17 16 19 C -0.10 -1.73 4.94 -19.87 -0.10 -1.83 16 20 C -0.12 -1.94 8.90 22.27 0.20 -1.74 16 21 C -0.12 -1.71 10.05 22.27 0.22 -1.48 16 22 C -0.12 -1.49 10.05 22.27 0.22 -1.26 16 23 C -0.12 -1.53 10.05 22.27 0.22 -1.30 16 24 C -0.11 -1.71 9.67 22.27 0.22 -1.49 16 25 C -0.05 -1.18 4.92 -19.67 -0.10 -1.27 16 26 C -0.16 -3.74 9.27 22.36 0.21 -3.54 16 27 C 0.08 2.08 11.18 84.68 0.95 3.02 16 28 N -0.51 -13.32 10.36 -195.84 -2.03 -15.35 16 29 C 0.09 1.94 11.18 84.68 0.95 2.89 16 30 C -0.16 -3.45 9.78 22.36 0.22 -3.23 16 31 H 0.26 14.93 8.31 -92.72 -0.77 14.16 16 32 H 0.00 0.25 7.75 -2.39 -0.02 0.23 16 33 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.34 11.77 8.58 -89.70 -0.77 11.00 16 37 H 0.35 9.74 9.06 -89.69 -0.81 8.93 16 38 H 0.41 7.76 6.89 -92.70 -0.64 7.13 16 39 H 0.13 1.85 6.60 -2.91 -0.02 1.83 16 40 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 42 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 43 H 0.13 1.62 8.04 -2.91 -0.02 1.60 16 44 H 0.14 2.89 7.46 -2.91 -0.02 2.86 16 45 H 0.17 3.44 8.06 -2.91 -0.02 3.41 16 46 H 0.18 2.78 8.06 -2.91 -0.02 2.76 16 47 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -73.21 398.66 0.67 -72.53 By element: Atomic # 1 Polarization: 38.52 SS G_CDS: -1.21 Total: 37.31 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 5.06 Total: -18.81 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -5.15 Total: -117.51 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.05 Total: -19.76 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -73.21 0.67 -72.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424134918.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.682 kcal (2) G-P(sol) polarization free energy of solvation -73.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds