Wall clock time and date at job start Sat Apr 11 2020 05:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99722 * 2 1 4 4 H 1.48500 * 109.47208 * 269.99622 * 3 2 1 5 5 H 1.48490 * 109.47220 * 30.00128 * 3 2 1 6 6 H 1.48499 * 109.46982 * 150.00087 * 3 2 1 7 7 C 1.37878 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99954 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00375 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47452 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47332 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47352 * 54.99600 * 11 10 9 13 13 N 1.46905 * 109.46947 * 294.99830 * 11 10 9 14 14 C 1.50697 * 109.47213 * 174.99878 * 11 10 9 15 15 O 1.21286 * 119.99959 * 100.00048 * 14 11 10 16 16 N 1.34775 * 119.99977 * 279.99847 * 14 11 10 17 17 C 1.46501 * 119.99848 * 180.02562 * 16 14 11 18 18 H 1.09004 * 109.47371 * 34.99657 * 17 16 14 19 19 C 1.50701 * 109.47081 * 155.00008 * 17 16 14 20 20 C 1.38233 * 119.99958 * 39.72579 * 19 17 16 21 21 C 1.38241 * 119.99789 * 179.78678 * 20 19 17 22 22 C 1.38237 * 119.99884 * 0.44453 * 21 20 19 23 23 C 1.38237 * 120.00068 * 359.80491 * 22 21 20 24 24 C 1.38236 * 119.99823 * 219.99714 * 19 17 16 25 25 C 1.50705 * 109.46983 * 274.99994 * 17 16 14 26 26 C 1.38656 * 120.78785 * 319.71437 * 25 17 16 27 27 C 1.38207 * 119.15931 * 179.75451 * 26 25 17 28 28 N 1.31860 * 120.76562 * 0.53960 * 27 26 25 29 29 C 1.31872 * 121.72840 * 359.73583 * 28 27 26 30 30 C 1.38209 * 120.76282 * 359.97438 * 29 28 27 31 31 H 0.96996 * 120.00272 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47129 * 60.00289 * 9 7 2 33 33 H 1.09004 * 109.47511 * 300.00408 * 9 7 2 34 34 H 1.08997 * 109.47653 * 60.00089 * 10 9 7 35 35 H 1.09001 * 109.47049 * 300.00036 * 10 9 7 36 36 H 1.00901 * 110.99869 * 176.04901 * 13 11 10 37 37 H 1.00896 * 110.99543 * 300.00023 * 13 11 10 38 38 H 0.96989 * 120.00118 * 359.97438 * 16 14 11 39 39 H 1.07993 * 120.00288 * 359.97438 * 20 19 17 40 40 H 1.07992 * 119.99938 * 180.27301 * 21 20 19 41 41 H 1.07996 * 119.99777 * 179.83514 * 22 21 20 42 42 H 1.08003 * 120.00200 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.00295 * 359.97438 * 24 19 17 44 44 H 1.08002 * 120.41960 * 0.02562 * 26 25 17 45 45 H 1.08001 * 119.61403 * 180.25331 * 27 26 25 46 46 H 1.07995 * 119.62416 * 179.97438 * 29 28 27 47 47 H 1.07999 * 120.41604 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6364 0.0001 11 6 5.5515 -2.6364 0.0001 12 1 5.9149 -2.0469 0.8418 13 7 6.0412 -2.0512 -1.2552 14 6 6.0539 -4.0518 0.1241 15 8 6.4281 -4.6510 -0.8618 16 7 6.0875 -4.6517 1.3305 17 6 6.5764 -6.0274 1.4511 18 1 7.3828 -6.1905 0.7361 19 6 7.0903 -6.2572 2.8490 20 6 6.4144 -5.7235 3.9303 21 6 6.8835 -5.9380 5.2129 22 6 8.0335 -6.6784 5.4135 23 6 8.7122 -7.2077 4.3318 24 6 8.2408 -6.9969 3.0495 25 6 5.4503 -6.9875 1.1657 26 6 4.1703 -6.7407 1.6381 27 6 3.1616 -7.6412 1.3522 28 7 3.4080 -8.7290 0.6488 29 6 4.6140 -8.9988 0.1884 30 6 5.6709 -8.1415 0.4296 31 1 -0.4850 0.8400 -0.0004 32 1 3.8752 -0.6796 0.8895 33 1 3.8746 -0.6807 -0.8905 34 1 3.6580 -3.1506 -0.8896 35 1 3.6586 -3.1501 0.8903 36 1 7.0478 -1.9807 -1.2528 37 1 5.7177 -2.5802 -2.0511 38 1 5.7886 -4.1724 2.1190 39 1 5.5183 -5.1416 3.7734 40 1 6.3530 -5.5248 6.0580 41 1 8.4014 -6.8437 6.4153 42 1 9.6105 -7.7865 4.4885 43 1 8.7711 -7.4105 2.2045 44 1 3.9631 -5.8536 2.2183 45 1 2.1610 -7.4541 1.7129 46 1 4.7777 -9.9000 -0.3837 47 1 6.6561 -8.3678 0.0495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424134919.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:31 Heat of formation + Delta-G solvation = 18.074735 kcal Electronic energy + Delta-G solvation = -28905.531257 eV Core-core repulsion = 25052.547265 eV Total energy + Delta-G solvation = -3852.983992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.98453 -39.66352 -39.29864 -36.07967 -35.25895 -32.81101 -32.56040 -31.43802 -31.27697 -31.12044 -30.52323 -27.50929 -26.16602 -23.96450 -23.39489 -22.92627 -22.81471 -21.12447 -20.43732 -19.95029 -17.88670 -17.25470 -17.05385 -16.75332 -16.40923 -16.02972 -15.70603 -15.51685 -15.30364 -14.90169 -14.54411 -14.32238 -14.11113 -13.84215 -13.82736 -13.67829 -13.58839 -13.40995 -13.01578 -12.68013 -12.56987 -12.39080 -11.78421 -11.73933 -11.57546 -11.40455 -11.04536 -10.90984 -10.45463 -10.04269 -9.87800 -9.73526 -9.70382 -9.62402 -9.35604 -9.30433 -9.20560 -9.13925 -9.10245 -8.54352 -8.43415 -6.00940 -3.98786 0.82575 1.01344 1.06430 1.18357 2.59346 3.01193 3.36078 3.41062 3.42751 3.47546 3.70261 4.27374 4.37126 4.45096 4.46797 4.49620 4.62585 4.69919 4.71291 4.75230 4.91188 4.97193 5.00860 5.10532 5.12895 5.30168 5.31737 5.35955 5.48459 5.57021 5.61945 5.63666 5.66643 5.84465 6.02434 6.06235 6.07952 6.14279 6.23769 6.35027 6.44030 6.57072 6.60434 6.83206 7.16866 7.34562 7.39166 7.53907 7.61394 7.84266 7.88520 8.12710 8.56099 9.03608 9.61925 11.12491 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010631 B = 0.003130 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.103967 B = 8943.292985 C = 9696.517613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.066 3.934 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.069 0.931 9 C -0.004 4.004 10 C -0.086 4.086 11 C 0.076 3.924 12 H 0.099 0.901 13 N -0.810 5.810 14 C 0.488 3.512 15 O -0.545 6.545 16 N -0.723 5.723 17 C 0.226 3.774 18 H 0.106 0.894 19 C -0.088 4.088 20 C -0.109 4.109 21 C -0.114 4.114 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.105 4.105 25 C -0.044 4.044 26 C -0.152 4.152 27 C 0.102 3.898 28 N -0.485 5.485 29 C 0.097 3.903 30 C -0.159 4.159 31 H 0.262 0.738 32 H 0.013 0.987 33 H 0.029 0.971 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.335 0.665 37 H 0.350 0.650 38 H 0.404 0.596 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.132 0.868 45 H 0.158 0.842 46 H 0.154 0.846 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.761 -16.355 9.829 26.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.135 4.135 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.087 0.913 9 C -0.041 4.041 10 C -0.124 4.124 11 C -0.040 4.040 12 H 0.117 0.883 13 N -0.338 5.338 14 C 0.274 3.726 15 O -0.421 6.421 16 N -0.377 5.377 17 C 0.120 3.880 18 H 0.123 0.877 19 C -0.089 4.089 20 C -0.127 4.127 21 C -0.132 4.132 22 C -0.135 4.135 23 C -0.135 4.135 24 C -0.123 4.123 25 C -0.054 4.054 26 C -0.172 4.172 27 C -0.055 4.055 28 N -0.194 5.194 29 C -0.060 4.060 30 C -0.179 4.179 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.147 0.853 37 H 0.164 0.836 38 H 0.240 0.760 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.150 0.850 45 H 0.175 0.825 46 H 0.172 0.828 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 17.767 -16.559 9.116 25.942 hybrid contribution 1.353 0.729 0.444 1.600 sum 19.120 -15.830 9.560 26.600 Atomic orbital electron populations 1.69919 1.06355 1.26838 1.51367 1.25012 0.94689 0.99204 0.94570 0.86740 0.80230 0.83456 0.78598 1.20289 1.21707 1.18915 1.21165 0.89695 0.94334 1.50771 0.91308 1.19479 0.96393 0.91079 0.97168 1.21459 0.87854 1.01612 1.01493 1.21880 0.99434 0.87509 0.95180 0.88342 1.59029 1.15398 1.56001 1.03377 1.22730 0.76559 0.90946 0.82410 1.90664 1.48001 1.66594 1.36867 1.46291 1.66987 1.13579 1.10807 1.18555 0.93993 0.81217 0.94191 0.87656 1.19720 0.96011 0.99504 0.93666 1.20987 0.99674 0.99696 0.92329 1.21175 0.96502 0.98554 0.96926 1.21226 0.95570 0.97697 0.99050 1.21142 1.00017 0.99923 0.92436 1.20980 0.95414 0.98350 0.97573 1.20449 0.94954 0.94810 0.95174 1.21944 0.93198 1.00904 1.01149 1.22794 0.99499 0.89377 0.93826 1.67669 1.22880 1.19445 1.09410 1.22711 0.87964 0.98754 0.96572 1.21930 1.01006 0.95219 0.99785 0.92820 0.96906 0.95251 0.92240 0.92293 0.85271 0.83552 0.76009 0.85825 0.85582 0.85905 0.85790 0.85812 0.84964 0.82501 0.82830 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.95 13.96 55.43 0.77 -27.18 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 8 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 9 C 0.00 -0.09 3.93 -27.89 -0.11 -0.20 16 10 C -0.09 -1.60 4.78 -26.73 -0.13 -1.73 16 11 C 0.08 1.14 3.15 -68.86 -0.22 0.92 16 12 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 13 N -0.81 -12.29 8.44 -5.65 -0.05 -12.34 16 14 C 0.49 6.93 7.02 -10.99 -0.08 6.85 16 15 O -0.54 -9.21 15.91 5.55 0.09 -9.12 16 16 N -0.72 -8.10 4.37 -56.06 -0.24 -8.35 16 17 C 0.23 2.38 2.41 -70.23 -0.17 2.21 16 18 H 0.11 1.19 7.34 -51.93 -0.38 0.81 16 19 C -0.09 -0.80 4.94 -104.62 -0.52 -1.32 16 20 C -0.11 -0.92 8.91 -39.58 -0.35 -1.28 16 21 C -0.11 -0.87 10.05 -39.58 -0.40 -1.27 16 22 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 23 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 24 C -0.10 -0.85 9.67 -39.58 -0.38 -1.24 16 25 C -0.04 -0.52 4.92 -104.31 -0.51 -1.03 16 26 C -0.15 -1.81 9.27 -39.44 -0.37 -2.18 16 27 C 0.10 1.28 11.18 -17.55 -0.20 1.08 16 28 N -0.48 -6.52 10.36 -13.25 -0.14 -6.66 16 29 C 0.10 1.11 11.18 -17.55 -0.20 0.92 16 30 C -0.16 -1.75 9.78 -39.44 -0.39 -2.14 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 33 H 0.03 0.70 7.18 -51.93 -0.37 0.33 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.34 4.35 9.06 -39.29 -0.36 3.99 16 37 H 0.35 5.51 8.58 -39.29 -0.34 5.17 16 38 H 0.40 3.83 6.85 -40.82 -0.28 3.55 16 39 H 0.12 0.94 6.57 -52.49 -0.34 0.59 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 43 H 0.12 0.83 8.04 -52.49 -0.42 0.41 16 44 H 0.13 1.41 7.48 -52.49 -0.39 1.02 16 45 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 46 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 395.05 15.07 5.95 5.95 Total: -1.00 -34.81 395.05 -10.17 -44.98 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -6.65 Total: 11.62 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -5.23 Total: -16.07 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.34 Total: -54.52 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.81 -10.17 -44.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424134919.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.055 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds