Wall clock time and date at job start Sat Apr 11 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99722 * 2 1 4 4 H 1.48500 * 109.47208 * 269.99622 * 3 2 1 5 5 H 1.48490 * 109.47220 * 30.00128 * 3 2 1 6 6 H 1.48499 * 109.46982 * 150.00087 * 3 2 1 7 7 C 1.37878 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99954 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00375 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47452 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47332 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47352 * 54.99600 * 11 10 9 13 13 N 1.46905 * 109.46947 * 294.99830 * 11 10 9 14 14 C 1.50697 * 109.47213 * 174.99878 * 11 10 9 15 15 O 1.21286 * 119.99959 * 100.00048 * 14 11 10 16 16 N 1.34775 * 119.99977 * 279.99847 * 14 11 10 17 17 C 1.46501 * 119.99848 * 180.02562 * 16 14 11 18 18 H 1.09004 * 109.47371 * 34.99657 * 17 16 14 19 19 C 1.50701 * 109.47081 * 155.00008 * 17 16 14 20 20 C 1.38233 * 119.99958 * 39.72579 * 19 17 16 21 21 C 1.38241 * 119.99789 * 179.78678 * 20 19 17 22 22 C 1.38237 * 119.99884 * 0.44453 * 21 20 19 23 23 C 1.38237 * 120.00068 * 359.80491 * 22 21 20 24 24 C 1.38236 * 119.99823 * 219.99714 * 19 17 16 25 25 C 1.50705 * 109.46983 * 274.99994 * 17 16 14 26 26 C 1.38656 * 120.78785 * 319.71437 * 25 17 16 27 27 C 1.38207 * 119.15931 * 179.75451 * 26 25 17 28 28 N 1.31860 * 120.76562 * 0.53960 * 27 26 25 29 29 C 1.31872 * 121.72840 * 359.73583 * 28 27 26 30 30 C 1.38209 * 120.76282 * 359.97438 * 29 28 27 31 31 H 0.96996 * 120.00272 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47129 * 60.00289 * 9 7 2 33 33 H 1.09004 * 109.47511 * 300.00408 * 9 7 2 34 34 H 1.08997 * 109.47653 * 60.00089 * 10 9 7 35 35 H 1.09001 * 109.47049 * 300.00036 * 10 9 7 36 36 H 1.00901 * 110.99869 * 176.04901 * 13 11 10 37 37 H 1.00896 * 110.99543 * 300.00023 * 13 11 10 38 38 H 0.96989 * 120.00118 * 359.97438 * 16 14 11 39 39 H 1.07993 * 120.00288 * 359.97438 * 20 19 17 40 40 H 1.07992 * 119.99938 * 180.27301 * 21 20 19 41 41 H 1.07996 * 119.99777 * 179.83514 * 22 21 20 42 42 H 1.08003 * 120.00200 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.00295 * 359.97438 * 24 19 17 44 44 H 1.08002 * 120.41960 * 0.02562 * 26 25 17 45 45 H 1.08001 * 119.61403 * 180.25331 * 27 26 25 46 46 H 1.07995 * 119.62416 * 179.97438 * 29 28 27 47 47 H 1.07999 * 120.41604 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6364 0.0001 11 6 5.5515 -2.6364 0.0001 12 1 5.9149 -2.0469 0.8418 13 7 6.0412 -2.0512 -1.2552 14 6 6.0539 -4.0518 0.1241 15 8 6.4281 -4.6510 -0.8618 16 7 6.0875 -4.6517 1.3305 17 6 6.5764 -6.0274 1.4511 18 1 7.3828 -6.1905 0.7361 19 6 7.0903 -6.2572 2.8490 20 6 6.4144 -5.7235 3.9303 21 6 6.8835 -5.9380 5.2129 22 6 8.0335 -6.6784 5.4135 23 6 8.7122 -7.2077 4.3318 24 6 8.2408 -6.9969 3.0495 25 6 5.4503 -6.9875 1.1657 26 6 4.1703 -6.7407 1.6381 27 6 3.1616 -7.6412 1.3522 28 7 3.4080 -8.7290 0.6488 29 6 4.6140 -8.9988 0.1884 30 6 5.6709 -8.1415 0.4296 31 1 -0.4850 0.8400 -0.0004 32 1 3.8752 -0.6796 0.8895 33 1 3.8746 -0.6807 -0.8905 34 1 3.6580 -3.1506 -0.8896 35 1 3.6586 -3.1501 0.8903 36 1 7.0478 -1.9807 -1.2528 37 1 5.7177 -2.5802 -2.0511 38 1 5.7886 -4.1724 2.1190 39 1 5.5183 -5.1416 3.7734 40 1 6.3530 -5.5248 6.0580 41 1 8.4014 -6.8437 6.4153 42 1 9.6105 -7.7865 4.4885 43 1 8.7711 -7.4105 2.2045 44 1 3.9631 -5.8536 2.2183 45 1 2.1610 -7.4541 1.7129 46 1 4.7777 -9.9000 -0.3837 47 1 6.6561 -8.3678 0.0495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424134919.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:30 Heat of formation + Delta-G solvation = -5.208848 kcal Electronic energy + Delta-G solvation = -28906.540909 eV Core-core repulsion = 25052.547265 eV Total energy + Delta-G solvation = -3853.993644 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.88484 -40.69110 -40.01477 -37.13878 -36.55603 -34.78713 -33.53251 -32.29421 -32.21835 -32.01384 -31.75252 -28.75143 -27.42670 -25.20619 -24.50083 -23.70494 -23.49586 -22.28061 -21.67789 -21.17183 -19.11375 -18.51724 -18.12199 -17.98828 -17.30736 -17.04341 -16.73174 -16.43683 -16.26774 -15.94853 -15.86835 -15.50534 -15.17129 -15.02788 -14.75815 -14.65318 -14.61962 -14.29009 -14.26163 -13.95947 -13.72625 -13.55883 -13.31381 -12.82861 -12.57784 -12.53556 -12.22141 -11.98188 -11.93477 -11.80105 -11.61579 -11.29642 -11.17360 -10.77848 -10.70414 -10.61409 -10.29662 -10.12702 -9.86237 -9.79549 -9.62844 -8.24283 -6.27531 0.08565 0.15662 0.41873 0.45911 1.41827 1.43041 1.45208 1.55544 2.05246 2.41671 2.77422 2.83838 3.12510 3.47262 3.53471 3.55875 3.65806 3.74164 3.82276 4.00508 4.04308 4.06955 4.14618 4.17960 4.25214 4.27534 4.34394 4.57593 4.63447 4.68072 4.69689 4.81584 4.83541 4.93712 4.99775 5.08439 5.11682 5.14048 5.31505 5.50358 5.51268 5.59242 5.59861 5.65472 5.71251 5.73341 6.03167 6.05253 6.33035 6.35789 6.50625 6.81240 6.97227 7.05871 7.37046 8.92593 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010631 B = 0.003130 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.103967 B = 8943.292985 C = 9696.517613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.003 3.997 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.240 1.240 7 C -0.530 4.530 8 H 0.028 0.972 9 C 0.003 3.997 10 C -0.077 4.077 11 C 0.085 3.915 12 H 0.122 0.878 13 N -0.818 5.818 14 C 0.493 3.507 15 O -0.572 6.572 16 N -0.709 5.709 17 C 0.233 3.767 18 H 0.100 0.900 19 C -0.099 4.099 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.114 4.114 25 C -0.052 4.052 26 C -0.161 4.161 27 C 0.083 3.917 28 N -0.511 5.511 29 C 0.088 3.912 30 C -0.163 4.163 31 H 0.264 0.736 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.036 0.964 35 H 0.067 0.933 36 H 0.350 0.650 37 H 0.345 0.655 38 H 0.413 0.587 39 H 0.127 0.873 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.166 0.834 46 H 0.179 0.821 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.692 -15.998 11.110 29.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.193 4.193 3 Si 0.777 3.223 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.163 1.163 7 C -0.568 4.568 8 H 0.046 0.954 9 C -0.034 4.034 10 C -0.115 4.115 11 C -0.031 4.031 12 H 0.140 0.860 13 N -0.347 5.347 14 C 0.278 3.722 15 O -0.451 6.451 16 N -0.362 5.362 17 C 0.128 3.872 18 H 0.118 0.882 19 C -0.100 4.100 20 C -0.138 4.138 21 C -0.141 4.141 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.132 4.132 25 C -0.061 4.061 26 C -0.181 4.181 27 C -0.073 4.073 28 N -0.221 5.221 29 C -0.068 4.068 30 C -0.183 4.183 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.163 0.837 37 H 0.159 0.841 38 H 0.251 0.749 39 H 0.145 0.855 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.163 0.837 43 H 0.153 0.847 44 H 0.158 0.842 45 H 0.183 0.817 46 H 0.196 0.804 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 20.722 -16.217 10.438 28.308 hybrid contribution 0.406 0.498 0.078 0.647 sum 21.128 -15.719 10.516 28.356 Atomic orbital electron populations 1.70079 1.08409 1.28015 1.53121 1.26004 0.95534 1.03553 0.94257 0.85619 0.79663 0.78129 0.78937 1.19917 1.21355 1.16278 1.21553 0.92517 0.92811 1.49930 0.95393 1.19364 0.92840 0.93920 0.97318 1.21235 0.90756 0.98670 1.00864 1.21689 0.96612 0.88707 0.96106 0.86045 1.59017 1.16599 1.55918 1.03156 1.22441 0.76453 0.90498 0.82794 1.90657 1.49511 1.67005 1.37964 1.46166 1.65821 1.13970 1.10259 1.18518 0.93295 0.80183 0.95206 0.88185 1.19626 0.96835 1.00781 0.92740 1.21119 0.99947 1.00044 0.92706 1.21429 0.96913 0.98675 0.97039 1.21559 0.95192 0.96918 1.00164 1.21445 1.00668 0.99785 0.92033 1.21203 0.95216 0.98207 0.98579 1.20667 0.95083 0.95337 0.95056 1.22066 0.93398 1.01148 1.01496 1.23038 1.00290 0.89682 0.94274 1.67675 1.24079 1.20043 1.10288 1.23187 0.87538 0.99716 0.96396 1.22234 1.01970 0.94864 0.99273 0.92687 0.95611 0.95574 0.94547 0.91487 0.83688 0.84108 0.74866 0.85496 0.84168 0.83853 0.83700 0.84707 0.84210 0.81713 0.80354 0.82795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.35 13.96 21.45 0.30 -60.05 16 2 C 0.00 0.16 5.47 84.66 0.46 0.62 16 3 Si 0.95 44.45 27.47 68.60 1.88 46.33 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 6 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 7 C -0.53 -30.32 9.66 25.60 0.25 -30.07 16 8 H 0.03 1.77 7.99 -2.91 -0.02 1.74 16 9 C 0.00 0.14 3.93 29.84 0.12 0.26 16 10 C -0.08 -2.82 4.78 30.59 0.15 -2.68 16 11 C 0.08 2.39 3.15 44.17 0.14 2.53 16 12 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 13 N -0.82 -23.42 8.44 -171.80 -1.45 -24.87 16 14 C 0.49 13.31 7.02 87.66 0.62 13.93 16 15 O -0.57 -18.82 15.91 -3.05 -0.05 -18.86 16 16 N -0.71 -14.85 4.37 -449.67 -1.96 -16.82 16 17 C 0.23 4.61 2.41 43.50 0.10 4.72 16 18 H 0.10 2.12 7.34 -2.38 -0.02 2.10 16 19 C -0.10 -1.65 4.94 -19.87 -0.10 -1.75 16 20 C -0.12 -1.86 8.91 22.27 0.20 -1.66 16 21 C -0.12 -1.64 10.05 22.27 0.22 -1.42 16 22 C -0.12 -1.43 10.05 22.27 0.22 -1.20 16 23 C -0.12 -1.46 10.05 22.27 0.22 -1.24 16 24 C -0.11 -1.63 9.67 22.27 0.22 -1.41 16 25 C -0.05 -1.17 4.92 -19.66 -0.10 -1.27 16 26 C -0.16 -3.83 9.27 22.36 0.21 -3.63 16 27 C 0.08 2.14 11.18 84.68 0.95 3.08 16 28 N -0.51 -13.84 10.36 -195.85 -2.03 -15.87 16 29 C 0.09 1.98 11.18 84.68 0.95 2.92 16 30 C -0.16 -3.44 9.78 22.36 0.22 -3.23 16 31 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 32 H 0.03 1.10 7.20 -2.39 -0.02 1.08 16 33 H 0.03 1.20 7.18 -2.38 -0.02 1.18 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.35 8.30 9.06 -89.69 -0.81 7.49 16 37 H 0.35 10.58 8.58 -89.70 -0.77 9.81 16 38 H 0.41 7.09 6.85 -92.72 -0.64 6.45 16 39 H 0.13 1.77 6.57 -2.91 -0.02 1.75 16 40 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 41 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 42 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 43 H 0.14 1.53 8.04 -2.91 -0.02 1.51 16 44 H 0.14 2.96 7.48 -2.91 -0.02 2.94 16 45 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 46 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 47 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -76.01 395.05 0.47 -75.54 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: -1.26 Total: 36.09 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 5.04 Total: -21.49 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -5.14 Total: -117.61 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.05 Total: -18.86 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Total: -76.01 0.47 -75.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424134919.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.328 kcal (2) G-P(sol) polarization free energy of solvation -76.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds