Wall clock time and date at job start Sat Apr 11 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99672 * 2 1 4 4 H 1.48503 * 109.47120 * 269.99631 * 3 2 1 5 5 H 1.48499 * 109.47302 * 29.99852 * 3 2 1 6 6 H 1.48502 * 109.47276 * 150.00147 * 3 2 1 7 7 C 1.37874 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99928 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00155 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47059 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46999 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.47260 * 55.00075 * 11 10 9 13 13 N 1.46898 * 109.47193 * 295.00324 * 11 10 9 14 14 C 1.50705 * 109.47166 * 175.00369 * 11 10 9 15 15 O 1.21283 * 119.99793 * 100.00248 * 14 11 10 16 16 N 1.34773 * 119.99770 * 279.99707 * 14 11 10 17 17 C 1.46495 * 120.00018 * 179.97438 * 16 14 11 18 18 H 1.09007 * 109.47295 * 325.00598 * 17 16 14 19 19 C 1.50699 * 109.47482 * 205.00210 * 17 16 14 20 20 C 1.38228 * 120.00009 * 319.73402 * 19 17 16 21 21 C 1.38247 * 119.99846 * 179.78586 * 20 19 17 22 22 C 1.38233 * 120.00081 * 0.46041 * 21 20 19 23 23 C 1.38237 * 119.99696 * 359.76975 * 22 21 20 24 24 C 1.38238 * 120.00435 * 0.02562 * 23 22 21 25 25 C 1.50707 * 109.47245 * 85.00321 * 17 16 14 26 26 C 1.38227 * 119.62024 * 244.98198 * 25 17 16 27 27 C 1.38627 * 119.15702 * 179.78495 * 26 25 17 28 28 C 1.38669 * 118.42389 * 0.47826 * 27 26 25 29 29 C 1.38186 * 119.16143 * 359.49762 * 28 27 26 30 30 N 1.31856 * 119.61172 * 64.99950 * 25 17 16 31 31 H 0.96994 * 120.00255 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.46797 * 59.99872 * 9 7 2 33 33 H 1.08996 * 109.46778 * 300.00320 * 9 7 2 34 34 H 1.09004 * 109.47205 * 60.00385 * 10 9 7 35 35 H 1.08996 * 109.47801 * 299.99957 * 10 9 7 36 36 H 1.00903 * 111.00536 * 176.04578 * 13 11 10 37 37 H 1.00899 * 111.00396 * 299.99973 * 13 11 10 38 38 H 0.96996 * 120.00461 * 0.02562 * 16 14 11 39 39 H 1.07999 * 120.00129 * 359.97438 * 20 19 17 40 40 H 1.08002 * 119.99825 * 180.24786 * 21 20 19 41 41 H 1.07990 * 120.00180 * 179.78907 * 22 21 20 42 42 H 1.07999 * 119.99749 * 180.02562 * 23 22 21 43 43 H 1.07992 * 120.00035 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.41915 * 0.04021 * 26 25 17 45 45 H 1.08008 * 120.78688 * 180.22921 * 27 26 25 46 46 H 1.08002 * 120.42244 * 179.78279 * 28 27 26 47 47 H 1.07996 * 119.61757 * 180.25243 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5117 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0023 11 6 5.5517 -2.6363 0.0022 12 1 5.9151 -2.0461 0.8436 13 7 6.0413 -2.0519 -1.2534 14 6 6.0541 -4.0516 0.1271 15 8 6.4283 -4.6514 -0.8584 16 7 6.0878 -4.6507 1.3339 17 6 6.5757 -6.0266 1.4553 18 1 6.2870 -6.5939 0.5704 19 6 5.9749 -6.6665 2.6803 20 6 5.8457 -5.9378 3.8478 21 6 5.2904 -6.5234 4.9703 22 6 4.8733 -7.8406 4.9279 23 6 5.0069 -8.5708 3.7618 24 6 5.5582 -7.9839 2.6381 25 6 8.0777 -6.0181 1.5785 26 6 8.8482 -6.5854 0.5810 27 6 10.2291 -6.5683 0.7020 28 6 10.7855 -5.9874 1.8315 29 6 9.9514 -5.4395 2.7873 30 7 8.6415 -5.4698 2.6368 31 1 -0.4850 0.8400 -0.0004 32 1 3.8746 -0.6798 0.8912 33 1 3.8753 -0.6802 -0.8888 34 1 3.6588 -3.1508 -0.8876 35 1 3.6581 -3.1497 0.8924 36 1 7.0479 -1.9812 -1.2512 37 1 5.7178 -2.5814 -2.0491 38 1 5.7883 -4.1711 2.1220 39 1 6.1756 -4.9100 3.8822 40 1 5.1858 -5.9528 5.8813 41 1 4.4427 -8.2992 5.8058 42 1 4.6806 -9.5998 3.7286 43 1 5.6629 -8.5545 1.7272 44 1 8.3805 -7.0327 -0.2836 45 1 10.8565 -7.0007 -0.0635 46 1 11.8574 -5.9595 1.9605 47 1 10.3770 -4.9816 3.6679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424135398.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:37 Heat of formation + Delta-G solvation = 18.198772 kcal Electronic energy + Delta-G solvation = -28743.648309 eV Core-core repulsion = 24890.669696 eV Total energy + Delta-G solvation = -3852.978613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.95486 -39.65417 -39.11630 -35.77788 -35.12015 -32.74752 -32.66749 -32.05268 -31.03191 -30.86421 -30.46734 -27.37612 -26.06641 -23.93156 -23.51651 -22.91508 -22.63812 -21.02814 -20.34716 -19.86116 -17.74180 -17.34047 -16.88656 -16.69504 -16.41855 -16.08241 -15.83631 -15.54677 -15.07573 -14.75512 -14.51869 -14.38849 -14.09159 -13.69844 -13.62934 -13.52594 -13.43418 -13.37415 -12.76724 -12.63507 -12.51830 -12.31826 -12.05101 -11.69336 -11.37828 -11.18167 -10.97733 -10.85973 -10.39959 -10.13244 -9.99138 -9.82389 -9.69751 -9.59056 -9.39785 -9.16327 -9.08941 -9.04566 -8.91425 -8.49054 -8.37344 -5.97217 -3.94651 0.76646 1.03267 1.17558 1.26377 2.67807 3.11248 3.39242 3.45571 3.51329 3.60132 3.62172 4.03811 4.36083 4.53337 4.57806 4.61646 4.69865 4.78127 4.81664 4.84481 4.91771 4.97359 5.00868 5.18777 5.29057 5.33312 5.37200 5.42116 5.46206 5.50469 5.69680 5.76479 5.84133 5.87335 5.91432 6.22856 6.27368 6.32657 6.35579 6.41416 6.46326 6.50919 6.81287 6.90175 7.24648 7.40816 7.49423 7.59628 7.66909 7.74636 7.88556 8.21855 8.60509 9.07762 9.65875 11.16327 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.003094 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.211651 B = 9047.095073 C =10607.915093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.065 3.935 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.069 0.931 9 C -0.004 4.004 10 C -0.087 4.087 11 C 0.076 3.924 12 H 0.098 0.902 13 N -0.810 5.810 14 C 0.487 3.513 15 O -0.550 6.550 16 N -0.714 5.714 17 C 0.239 3.761 18 H 0.108 0.892 19 C -0.089 4.089 20 C -0.086 4.086 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.107 4.107 25 C 0.122 3.878 26 C -0.148 4.148 27 C -0.077 4.077 28 C -0.174 4.174 29 C 0.096 3.904 30 N -0.465 5.465 31 H 0.262 0.738 32 H 0.013 0.987 33 H 0.029 0.971 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.334 0.666 37 H 0.350 0.650 38 H 0.406 0.594 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.133 0.867 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.153 -17.410 8.400 28.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.135 4.135 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.087 0.913 9 C -0.042 4.042 10 C -0.125 4.125 11 C -0.039 4.039 12 H 0.115 0.885 13 N -0.338 5.338 14 C 0.273 3.727 15 O -0.427 6.427 16 N -0.367 5.367 17 C 0.133 3.867 18 H 0.126 0.874 19 C -0.090 4.090 20 C -0.104 4.104 21 C -0.137 4.137 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.125 4.125 25 C -0.017 4.017 26 C -0.169 4.169 27 C -0.104 4.104 28 C -0.194 4.194 29 C -0.061 4.061 30 N -0.174 5.174 31 H 0.071 0.929 32 H 0.031 0.969 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.146 0.854 37 H 0.164 0.836 38 H 0.243 0.757 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.154 0.846 45 H 0.152 0.848 46 H 0.151 0.849 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 20.293 -16.669 8.513 27.607 hybrid contribution 1.400 -0.267 -0.373 1.473 sum 21.693 -16.936 8.140 28.700 Atomic orbital electron populations 1.69925 1.06350 1.26791 1.51554 1.25015 0.94694 0.99205 0.94616 0.86736 0.80262 0.83442 0.78558 1.20311 1.21728 1.18897 1.21184 0.89745 0.94341 1.50556 0.91285 1.19482 0.96349 0.91179 0.97143 1.21470 0.87869 1.01577 1.01612 1.21858 0.99424 0.87620 0.95044 0.88457 1.59033 1.15305 1.56029 1.03402 1.22699 0.76544 0.91005 0.82437 1.90636 1.48632 1.66373 1.37102 1.46221 1.65808 1.13910 1.10747 1.18525 0.86620 0.84594 0.97006 0.87432 1.19629 1.00106 0.94651 0.94596 1.20938 0.97287 1.00135 0.92051 1.21164 0.98791 0.95272 0.98493 1.21191 0.99604 0.94632 0.98029 1.21081 0.99872 0.99975 0.93075 1.20971 0.98528 0.94224 0.98796 1.21399 0.96179 0.94028 0.90133 1.21986 0.94423 1.00591 0.99877 1.21580 0.94912 0.96575 0.97285 1.22153 1.01429 1.00252 0.95570 1.22750 0.88819 0.96090 0.98455 1.67408 1.12806 1.14980 1.22175 0.92862 0.96916 0.95258 0.92192 0.92095 0.85404 0.83606 0.75727 0.85591 0.85819 0.86101 0.85984 0.86023 0.84637 0.84822 0.84899 0.82782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.36 13.96 55.43 0.77 -27.59 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.52 -14.94 9.66 -34.44 -0.33 -15.28 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 10 C -0.09 -1.69 4.78 -26.73 -0.13 -1.82 16 11 C 0.08 1.22 3.15 -68.86 -0.22 1.00 16 12 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 13 N -0.81 -12.79 8.44 -5.65 -0.05 -12.84 16 14 C 0.49 7.39 7.02 -10.98 -0.08 7.31 16 15 O -0.55 -9.41 15.91 5.56 0.09 -9.33 16 16 N -0.71 -9.21 5.01 -56.06 -0.28 -9.49 16 17 C 0.24 2.86 2.49 -70.23 -0.18 2.68 16 18 H 0.11 1.34 7.17 -51.92 -0.37 0.97 16 19 C -0.09 -1.00 4.87 -104.62 -0.51 -1.51 16 20 C -0.09 -0.93 8.50 -39.58 -0.34 -1.27 16 21 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 22 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 23 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 24 C -0.11 -1.10 9.67 -39.58 -0.38 -1.48 16 25 C 0.12 1.43 5.71 -82.58 -0.47 0.96 16 26 C -0.15 -1.58 9.71 -39.44 -0.38 -1.96 16 27 C -0.08 -0.68 10.18 -39.28 -0.40 -1.08 16 28 C -0.17 -1.41 10.11 -39.44 -0.40 -1.81 16 29 C 0.10 0.90 11.18 -17.55 -0.20 0.71 16 30 N -0.46 -5.35 9.55 -9.47 -0.09 -5.44 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 32 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 33 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.33 4.62 9.06 -39.29 -0.36 4.26 16 37 H 0.35 5.61 8.58 -39.29 -0.34 5.27 16 38 H 0.41 4.81 6.89 -40.82 -0.28 4.53 16 39 H 0.13 1.31 6.93 -52.49 -0.36 0.95 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.12 1.05 8.04 -52.49 -0.42 0.63 16 44 H 0.14 1.34 7.95 -52.49 -0.42 0.93 16 45 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 46 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 47 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 395.75 15.07 5.96 5.96 Total: -1.00 -34.52 395.75 -10.36 -44.87 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -6.69 Total: 12.81 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -5.41 Total: -16.50 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.35 Total: -55.36 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.52 -10.36 -44.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424135398.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.073 kcal (2) G-P(sol) polarization free energy of solvation -34.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds