Wall clock time and date at job start Sat Apr 11 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99672 * 2 1 4 4 H 1.48503 * 109.47120 * 269.99631 * 3 2 1 5 5 H 1.48499 * 109.47302 * 29.99852 * 3 2 1 6 6 H 1.48502 * 109.47276 * 150.00147 * 3 2 1 7 7 C 1.37874 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99928 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00155 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47059 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46999 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.47260 * 55.00075 * 11 10 9 13 13 N 1.46898 * 109.47193 * 295.00324 * 11 10 9 14 14 C 1.50705 * 109.47166 * 175.00369 * 11 10 9 15 15 O 1.21283 * 119.99793 * 100.00248 * 14 11 10 16 16 N 1.34773 * 119.99770 * 279.99707 * 14 11 10 17 17 C 1.46495 * 120.00018 * 179.97438 * 16 14 11 18 18 H 1.09007 * 109.47295 * 325.00598 * 17 16 14 19 19 C 1.50699 * 109.47482 * 205.00210 * 17 16 14 20 20 C 1.38228 * 120.00009 * 319.73402 * 19 17 16 21 21 C 1.38247 * 119.99846 * 179.78586 * 20 19 17 22 22 C 1.38233 * 120.00081 * 0.46041 * 21 20 19 23 23 C 1.38237 * 119.99696 * 359.76975 * 22 21 20 24 24 C 1.38238 * 120.00435 * 0.02562 * 23 22 21 25 25 C 1.50707 * 109.47245 * 85.00321 * 17 16 14 26 26 C 1.38227 * 119.62024 * 244.98198 * 25 17 16 27 27 C 1.38627 * 119.15702 * 179.78495 * 26 25 17 28 28 C 1.38669 * 118.42389 * 0.47826 * 27 26 25 29 29 C 1.38186 * 119.16143 * 359.49762 * 28 27 26 30 30 N 1.31856 * 119.61172 * 64.99950 * 25 17 16 31 31 H 0.96994 * 120.00255 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.46797 * 59.99872 * 9 7 2 33 33 H 1.08996 * 109.46778 * 300.00320 * 9 7 2 34 34 H 1.09004 * 109.47205 * 60.00385 * 10 9 7 35 35 H 1.08996 * 109.47801 * 299.99957 * 10 9 7 36 36 H 1.00903 * 111.00536 * 176.04578 * 13 11 10 37 37 H 1.00899 * 111.00396 * 299.99973 * 13 11 10 38 38 H 0.96996 * 120.00461 * 0.02562 * 16 14 11 39 39 H 1.07999 * 120.00129 * 359.97438 * 20 19 17 40 40 H 1.08002 * 119.99825 * 180.24786 * 21 20 19 41 41 H 1.07990 * 120.00180 * 179.78907 * 22 21 20 42 42 H 1.07999 * 119.99749 * 180.02562 * 23 22 21 43 43 H 1.07992 * 120.00035 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.41915 * 0.04021 * 26 25 17 45 45 H 1.08008 * 120.78688 * 180.22921 * 27 26 25 46 46 H 1.08002 * 120.42244 * 179.78279 * 28 27 26 47 47 H 1.07996 * 119.61757 * 180.25243 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5117 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0023 11 6 5.5517 -2.6363 0.0022 12 1 5.9151 -2.0461 0.8436 13 7 6.0413 -2.0519 -1.2534 14 6 6.0541 -4.0516 0.1271 15 8 6.4283 -4.6514 -0.8584 16 7 6.0878 -4.6507 1.3339 17 6 6.5757 -6.0266 1.4553 18 1 6.2870 -6.5939 0.5704 19 6 5.9749 -6.6665 2.6803 20 6 5.8457 -5.9378 3.8478 21 6 5.2904 -6.5234 4.9703 22 6 4.8733 -7.8406 4.9279 23 6 5.0069 -8.5708 3.7618 24 6 5.5582 -7.9839 2.6381 25 6 8.0777 -6.0181 1.5785 26 6 8.8482 -6.5854 0.5810 27 6 10.2291 -6.5683 0.7020 28 6 10.7855 -5.9874 1.8315 29 6 9.9514 -5.4395 2.7873 30 7 8.6415 -5.4698 2.6368 31 1 -0.4850 0.8400 -0.0004 32 1 3.8746 -0.6798 0.8912 33 1 3.8753 -0.6802 -0.8888 34 1 3.6588 -3.1508 -0.8876 35 1 3.6581 -3.1497 0.8924 36 1 7.0479 -1.9812 -1.2512 37 1 5.7178 -2.5814 -2.0491 38 1 5.7883 -4.1711 2.1220 39 1 6.1756 -4.9100 3.8822 40 1 5.1858 -5.9528 5.8813 41 1 4.4427 -8.2992 5.8058 42 1 4.6806 -9.5998 3.7286 43 1 5.6629 -8.5545 1.7272 44 1 8.3805 -7.0327 -0.2836 45 1 10.8565 -7.0007 -0.0635 46 1 11.8574 -5.9595 1.9605 47 1 10.3770 -4.9816 3.6679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424135398.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:36 Heat of formation + Delta-G solvation = -5.013413 kcal Electronic energy + Delta-G solvation = -28744.654865 eV Core-core repulsion = 24890.669696 eV Total energy + Delta-G solvation = -3853.985169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.83391 -40.65834 -39.94139 -37.02676 -36.35892 -34.78857 -33.39601 -32.95545 -32.29561 -31.77709 -31.60299 -28.70759 -27.33822 -25.12286 -24.53614 -23.67469 -23.47947 -22.26590 -21.65388 -21.14988 -19.09961 -18.49964 -18.10177 -17.85849 -17.33956 -17.03684 -16.73717 -16.58839 -16.25458 -15.87433 -15.76009 -15.51695 -15.22654 -15.01769 -14.71429 -14.55952 -14.34340 -14.26086 -14.10525 -13.98098 -13.54329 -13.52246 -13.34542 -12.82827 -12.74592 -12.52759 -12.12907 -11.97093 -11.91688 -11.80507 -11.61727 -11.29850 -11.16468 -10.84523 -10.71052 -10.65530 -10.23174 -10.06903 -9.81381 -9.71966 -9.61098 -8.24687 -6.27905 0.03041 0.33107 0.41722 0.50456 1.41487 1.42504 1.46536 1.55595 2.08887 2.41558 2.82242 2.86687 3.11851 3.27733 3.52169 3.55595 3.79053 3.83252 3.97362 4.02342 4.06284 4.14331 4.17109 4.23016 4.24719 4.28767 4.36262 4.59946 4.62747 4.69911 4.71809 4.79277 4.82801 5.02521 5.11156 5.13578 5.15833 5.23797 5.26422 5.49898 5.53296 5.61341 5.63868 5.65336 5.72454 5.74140 6.03181 6.08093 6.32856 6.37885 6.48927 6.80498 7.00789 7.06106 7.36544 8.92305 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.003094 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.211651 B = 9047.095073 C =10607.915093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.003 3.997 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.243 1.243 7 C -0.531 4.531 8 H 0.028 0.972 9 C 0.003 3.997 10 C -0.078 4.078 11 C 0.086 3.914 12 H 0.114 0.886 13 N -0.815 5.815 14 C 0.491 3.509 15 O -0.571 6.571 16 N -0.704 5.704 17 C 0.241 3.759 18 H 0.095 0.905 19 C -0.101 4.101 20 C -0.098 4.098 21 C -0.128 4.128 22 C -0.121 4.121 23 C -0.126 4.126 24 C -0.121 4.121 25 C 0.103 3.897 26 C -0.166 4.166 27 C -0.080 4.080 28 C -0.166 4.166 29 C 0.083 3.917 30 N -0.483 5.483 31 H 0.265 0.735 32 H 0.022 0.978 33 H 0.028 0.972 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.347 0.653 37 H 0.347 0.653 38 H 0.411 0.589 39 H 0.125 0.875 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.159 0.841 46 H 0.166 0.834 47 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.975 -17.200 9.542 31.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.193 4.193 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.166 1.166 7 C -0.569 4.569 8 H 0.047 0.953 9 C -0.034 4.034 10 C -0.116 4.116 11 C -0.029 4.029 12 H 0.132 0.868 13 N -0.344 5.344 14 C 0.276 3.724 15 O -0.451 6.451 16 N -0.356 5.356 17 C 0.135 3.865 18 H 0.113 0.887 19 C -0.102 4.102 20 C -0.117 4.117 21 C -0.146 4.146 22 C -0.139 4.139 23 C -0.144 4.144 24 C -0.139 4.139 25 C -0.035 4.035 26 C -0.187 4.187 27 C -0.106 4.106 28 C -0.186 4.186 29 C -0.075 4.075 30 N -0.193 5.193 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.249 0.751 39 H 0.143 0.857 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.162 0.838 43 H 0.148 0.852 44 H 0.151 0.849 45 H 0.177 0.823 46 H 0.183 0.817 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 23.135 -16.482 9.680 30.010 hybrid contribution 0.509 -0.455 -0.689 0.971 sum 23.644 -16.937 8.991 30.443 Atomic orbital electron populations 1.70080 1.08373 1.28048 1.53119 1.26007 0.95564 1.03560 0.94215 0.85605 0.79546 0.78087 0.79032 1.19654 1.21231 1.16595 1.21557 0.92473 0.92892 1.49974 0.95348 1.19362 0.92914 0.93884 0.97249 1.21247 0.90620 0.98765 1.01001 1.21635 0.96735 0.88683 0.95898 0.86798 1.59016 1.16403 1.55911 1.03112 1.22427 0.76598 0.90592 0.82778 1.90628 1.49856 1.66678 1.37914 1.46149 1.64853 1.14420 1.10186 1.18501 0.87471 0.83542 0.96938 0.88677 1.19662 1.00835 0.95217 0.94477 1.21022 0.97954 1.00261 0.92427 1.21440 0.98490 0.95874 0.98788 1.21530 0.99055 0.94466 0.98830 1.21400 0.99229 1.01067 0.92734 1.21202 0.98798 0.94178 0.99752 1.21301 0.95824 0.95430 0.90965 1.22120 0.95603 1.01171 0.99760 1.21938 0.94306 0.96169 0.98195 1.22522 1.02974 0.98563 0.94529 1.23268 0.88364 0.96165 0.99663 1.67372 1.14089 1.15594 1.22235 0.92635 0.95953 0.95349 0.93884 0.91848 0.83947 0.83902 0.75146 0.85694 0.84219 0.83812 0.83832 0.85177 0.84900 0.82302 0.81674 0.80519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.10 13.96 21.45 0.30 -60.80 16 2 C 0.00 0.16 5.47 84.65 0.46 0.62 16 3 Si 0.95 45.35 27.47 68.60 1.88 47.24 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.24 -10.61 6.54 99.48 0.65 -9.96 16 7 C -0.53 -31.12 9.66 25.60 0.25 -30.87 16 8 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 9 C 0.00 0.16 3.93 29.85 0.12 0.28 16 10 C -0.08 -3.03 4.78 30.59 0.15 -2.89 16 11 C 0.09 2.67 3.15 44.17 0.14 2.81 16 12 H 0.11 3.17 8.14 -2.38 -0.02 3.15 16 13 N -0.82 -24.76 8.44 -171.79 -1.45 -26.21 16 14 C 0.49 14.75 7.02 87.66 0.62 15.36 16 15 O -0.57 -19.62 15.91 -3.04 -0.05 -19.67 16 16 N -0.70 -18.14 5.01 -449.68 -2.25 -20.40 16 17 C 0.24 5.87 2.49 43.50 0.11 5.98 16 18 H 0.10 2.49 7.17 -2.38 -0.02 2.48 16 19 C -0.10 -2.29 4.87 -19.87 -0.10 -2.38 16 20 C -0.10 -2.11 8.50 22.27 0.19 -1.92 16 21 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 22 C -0.12 -2.06 10.05 22.27 0.22 -1.84 16 23 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 24 C -0.12 -2.47 9.67 22.27 0.22 -2.25 16 25 C 0.10 2.41 5.71 42.55 0.24 2.65 16 26 C -0.17 -3.47 9.71 22.36 0.22 -3.26 16 27 C -0.08 -1.25 10.18 22.47 0.23 -1.02 16 28 C -0.17 -2.25 10.11 22.36 0.23 -2.03 16 29 C 0.08 1.40 11.18 84.67 0.95 2.34 16 30 N -0.48 -10.74 9.55 -183.88 -1.76 -12.49 16 31 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 32 H 0.02 1.01 7.20 -2.38 -0.02 0.99 16 33 H 0.03 1.34 7.18 -2.39 -0.02 1.32 16 34 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.35 9.02 9.06 -89.69 -0.81 8.21 16 37 H 0.35 10.95 8.58 -89.69 -0.77 10.18 16 38 H 0.41 9.65 6.89 -92.71 -0.64 9.01 16 39 H 0.13 2.60 6.93 -2.91 -0.02 2.58 16 40 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 41 H 0.14 1.72 8.06 -2.92 -0.02 1.69 16 42 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 43 H 0.13 2.29 8.04 -2.91 -0.02 2.26 16 44 H 0.13 2.70 7.95 -2.91 -0.02 2.68 16 45 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 46 H 0.17 1.11 8.06 -2.91 -0.02 1.08 16 47 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -75.52 395.75 0.09 -75.44 By element: Atomic # 1 Polarization: 40.75 SS G_CDS: -1.27 Total: 39.49 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: 4.68 Total: -22.60 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -5.16 Total: -119.90 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.05 Total: -19.67 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.24 kcal Total: -75.52 0.09 -75.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424135398.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.422 kcal (2) G-P(sol) polarization free energy of solvation -75.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds