Wall clock time and date at job start Sat Apr 11 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99935 * 2 1 4 4 H 1.48503 * 109.46974 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47198 * 300.00589 * 3 2 1 6 6 H 1.48504 * 109.46998 * 60.00685 * 3 2 1 7 7 C 1.37876 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99783 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00298 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47247 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47091 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46858 * 304.99498 * 11 10 9 13 13 N 1.46896 * 109.47252 * 65.00093 * 11 10 9 14 14 C 1.50704 * 109.46809 * 184.99969 * 11 10 9 15 15 O 1.21280 * 119.99771 * 259.99684 * 14 11 10 16 16 N 1.34778 * 120.00106 * 80.00179 * 14 11 10 17 17 C 1.46494 * 120.00262 * 179.97438 * 16 14 11 18 18 H 1.09001 * 109.46557 * 324.99969 * 17 16 14 19 19 C 1.50694 * 109.47261 * 205.00167 * 17 16 14 20 20 C 1.38237 * 119.99906 * 319.72129 * 19 17 16 21 21 C 1.38234 * 120.00074 * 179.79034 * 20 19 17 22 22 C 1.38239 * 119.99814 * 0.46541 * 21 20 19 23 23 C 1.38236 * 120.00072 * 359.76930 * 22 21 20 24 24 C 1.38234 * 120.00133 * 0.02562 * 23 22 21 25 25 C 1.50695 * 109.47070 * 84.99603 * 17 16 14 26 26 C 1.38235 * 119.62125 * 245.00214 * 25 17 16 27 27 C 1.38620 * 119.16331 * 179.72806 * 26 25 17 28 28 C 1.38676 * 118.42038 * 359.97438 * 27 26 25 29 29 C 1.38174 * 119.16571 * 0.02562 * 28 27 26 30 30 N 1.31850 * 119.61978 * 64.73085 * 25 17 16 31 31 H 0.96991 * 120.00259 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.47039 * 60.00738 * 9 7 2 33 33 H 1.09005 * 109.47035 * 300.00591 * 9 7 2 34 34 H 1.09001 * 109.47022 * 60.00086 * 10 9 7 35 35 H 1.08996 * 109.46906 * 300.00090 * 10 9 7 36 36 H 1.00900 * 111.00455 * 59.99578 * 13 11 10 37 37 H 1.00894 * 111.00250 * 183.95542 * 13 11 10 38 38 H 0.97000 * 119.99525 * 359.97438 * 16 14 11 39 39 H 1.08002 * 119.99915 * 0.02562 * 20 19 17 40 40 H 1.07997 * 120.00342 * 180.25456 * 21 20 19 41 41 H 1.07996 * 119.99867 * 179.78907 * 22 21 20 42 42 H 1.08004 * 120.00071 * 180.02562 * 23 22 21 43 43 H 1.07997 * 120.00395 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.41461 * 359.74373 * 26 25 17 45 45 H 1.07997 * 120.79364 * 180.02562 * 27 26 25 46 46 H 1.08005 * 120.42039 * 180.02562 * 28 27 26 47 47 H 1.08001 * 119.62058 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7880 -5.0073 0.8405 13 7 0.7291 -5.1182 -1.2567 14 6 2.4550 -6.1299 0.1226 15 8 2.7871 -6.7531 -0.8633 16 7 2.9575 -6.4593 1.3291 17 6 3.9045 -7.5705 1.4496 18 1 3.6426 -8.3501 0.7342 19 6 3.8461 -8.1310 2.8472 20 6 3.7330 -7.2785 3.9296 21 6 3.6751 -7.7929 5.2113 22 6 3.7400 -9.1592 5.4114 23 6 3.8580 -10.0113 4.3294 24 6 3.9116 -9.4973 3.0473 25 6 5.2989 -7.0752 1.1647 26 6 5.9788 -7.5473 0.0576 27 6 7.2589 -7.0810 -0.1986 28 6 7.8097 -6.1526 0.6720 29 6 7.0698 -5.7267 1.7585 30 7 5.8544 -6.1925 1.9714 31 1 -0.4850 0.8399 0.0004 32 1 0.6242 -2.5567 -0.8904 33 1 0.6247 -2.5570 0.8897 34 1 2.8720 -3.6043 0.8895 35 1 2.8720 -3.6043 -0.8905 36 1 1.3491 -5.1022 -2.0525 37 1 0.1647 -5.9546 -1.2547 38 1 2.6920 -5.9606 2.1176 39 1 3.6860 -6.2109 3.7735 40 1 3.5825 -7.1272 6.0567 41 1 3.6981 -9.5608 6.4130 42 1 3.9083 -11.0788 4.4857 43 1 4.0042 -10.1630 2.2020 44 1 5.5184 -8.2700 -0.5996 45 1 7.8137 -7.4316 -1.0562 46 1 8.8044 -5.7674 0.5030 47 1 7.4918 -5.0042 2.4414 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424135400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:39 Heat of formation + Delta-G solvation = -6.884991 kcal Electronic energy + Delta-G solvation = -28860.500080 eV Core-core repulsion = 25006.433753 eV Total energy + Delta-G solvation = -3854.066327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.82849 -40.64996 -39.93765 -36.99243 -36.34886 -34.82631 -33.39238 -32.94876 -31.95141 -31.76845 -31.59380 -28.51999 -27.26797 -25.28953 -24.55983 -23.67650 -23.49486 -22.46137 -21.66331 -21.11549 -18.93008 -18.22741 -18.07551 -17.91972 -17.31853 -17.00379 -16.73873 -16.54673 -16.46629 -15.84936 -15.82581 -15.47449 -15.18617 -15.07871 -14.57807 -14.38178 -14.27628 -14.24958 -14.09821 -13.81339 -13.51327 -13.47655 -13.31911 -12.83553 -12.75030 -12.53590 -12.27119 -12.11817 -11.91174 -11.79823 -11.68760 -11.28064 -11.02480 -10.84318 -10.65663 -10.50656 -10.22655 -10.05633 -9.80816 -9.69989 -9.57960 -8.14940 -6.25220 0.03679 0.33429 0.42262 0.51075 1.40023 1.40714 1.45854 1.53683 2.09860 2.43539 2.83365 2.86187 3.17858 3.29604 3.54049 3.57231 3.79453 3.83114 3.98148 4.02245 4.07736 4.15541 4.17320 4.23584 4.28513 4.30146 4.36662 4.60578 4.63448 4.72811 4.74261 4.78633 4.90182 5.03241 5.12061 5.15123 5.21408 5.23071 5.27184 5.54275 5.55295 5.62328 5.65841 5.74281 5.82209 5.96799 6.06288 6.09133 6.29311 6.37904 6.52263 6.92713 7.01254 7.05830 7.42718 8.96493 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010244 B = 0.003051 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.520354 B = 9174.811729 C = 9683.526081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.052 0.948 9 C 0.041 3.959 10 C -0.077 4.077 11 C 0.087 3.913 12 H 0.109 0.891 13 N -0.816 5.816 14 C 0.493 3.507 15 O -0.571 6.571 16 N -0.704 5.704 17 C 0.242 3.758 18 H 0.102 0.898 19 C -0.099 4.099 20 C -0.101 4.101 21 C -0.128 4.128 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.117 4.117 25 C 0.100 3.900 26 C -0.166 4.166 27 C -0.081 4.081 28 C -0.169 4.169 29 C 0.080 3.920 30 N -0.486 5.486 31 H 0.262 0.738 32 H 0.008 0.992 33 H -0.006 1.006 34 H 0.058 0.942 35 H 0.038 0.962 36 H 0.345 0.655 37 H 0.348 0.652 38 H 0.410 0.590 39 H 0.119 0.881 40 H 0.138 0.862 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.133 0.867 44 H 0.138 0.862 45 H 0.161 0.839 46 H 0.164 0.836 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.666 -22.179 8.580 27.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.070 0.930 9 C 0.004 3.996 10 C -0.115 4.115 11 C -0.029 4.029 12 H 0.126 0.874 13 N -0.345 5.345 14 C 0.278 3.722 15 O -0.450 6.450 16 N -0.356 5.356 17 C 0.137 3.863 18 H 0.120 0.880 19 C -0.100 4.100 20 C -0.119 4.119 21 C -0.146 4.146 22 C -0.137 4.137 23 C -0.142 4.142 24 C -0.136 4.136 25 C -0.039 4.039 26 C -0.186 4.186 27 C -0.107 4.107 28 C -0.188 4.188 29 C -0.077 4.077 30 N -0.195 5.195 31 H 0.071 0.929 32 H 0.026 0.974 33 H 0.012 0.988 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.247 0.753 39 H 0.136 0.864 40 H 0.155 0.845 41 H 0.163 0.837 42 H 0.164 0.836 43 H 0.151 0.849 44 H 0.156 0.844 45 H 0.178 0.822 46 H 0.182 0.818 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 12.899 -21.524 8.800 26.592 hybrid contribution 1.099 0.215 -0.716 1.329 sum 13.998 -21.309 8.084 26.746 Atomic orbital electron populations 1.70106 1.07566 1.27483 1.51693 1.25888 0.95723 1.02972 0.94929 0.85491 0.78992 0.79277 0.77827 1.18974 1.20513 1.20138 1.21716 0.93179 0.92794 1.50435 0.92998 1.18814 0.93771 0.91199 0.95818 1.21326 0.97618 0.92405 1.00183 1.21604 0.93687 0.91915 0.95679 0.87367 1.58956 1.27104 1.45385 1.03034 1.22384 0.81735 0.85225 0.82849 1.90616 1.61970 1.54724 1.37678 1.46162 1.44760 1.34515 1.10155 1.18541 0.83792 0.88604 0.95401 0.87974 1.19632 1.02868 0.94451 0.93057 1.21014 0.98581 0.99672 0.92645 1.21412 0.99952 0.96316 0.96907 1.21528 0.98710 0.93322 1.00138 1.21408 0.99772 1.01102 0.91927 1.21196 0.99948 0.93767 0.98642 1.21443 0.96161 0.94217 0.92061 1.22149 0.96371 1.02140 0.97937 1.21948 0.94439 0.94994 0.99307 1.22510 1.02712 0.98101 0.95499 1.23215 0.89726 0.97818 0.96951 1.67358 1.12418 1.09837 1.29882 0.92871 0.97388 0.98753 0.92335 0.94291 0.84098 0.83859 0.75257 0.86350 0.84456 0.83712 0.83576 0.84870 0.84387 0.82158 0.81847 0.80987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -31.55 9.11 25.60 0.23 -31.31 16 8 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 9 C 0.04 2.19 4.86 29.85 0.15 2.34 16 10 C -0.08 -3.25 4.78 30.60 0.15 -3.11 16 11 C 0.09 3.00 3.15 44.17 0.14 3.14 16 12 H 0.11 3.51 8.14 -2.38 -0.02 3.49 16 13 N -0.82 -28.06 8.44 -171.79 -1.45 -29.51 16 14 C 0.49 15.72 7.02 87.66 0.62 16.33 16 15 O -0.57 -20.34 15.91 -3.03 -0.05 -20.39 16 16 N -0.70 -19.08 5.01 -449.71 -2.25 -21.33 16 17 C 0.24 6.01 2.49 43.50 0.11 6.12 16 18 H 0.10 2.56 7.17 -2.39 -0.02 2.54 16 19 C -0.10 -2.18 4.87 -19.87 -0.10 -2.28 16 20 C -0.10 -2.18 8.51 22.27 0.19 -1.99 16 21 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 22 C -0.12 -1.83 10.05 22.27 0.22 -1.60 16 23 C -0.12 -1.91 10.05 22.27 0.22 -1.69 16 24 C -0.12 -2.16 9.67 22.27 0.22 -1.95 16 25 C 0.10 2.62 5.71 42.55 0.24 2.86 16 26 C -0.17 -3.91 9.71 22.36 0.22 -3.69 16 27 C -0.08 -1.56 10.18 22.47 0.23 -1.33 16 28 C -0.17 -3.10 10.11 22.36 0.23 -2.87 16 29 C 0.08 1.78 11.18 84.67 0.95 2.73 16 30 N -0.49 -12.96 9.56 -183.89 -1.76 -14.72 16 31 H 0.26 15.13 8.31 -92.72 -0.77 14.36 16 32 H 0.01 0.45 7.75 -2.39 -0.02 0.43 16 33 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 34 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 36 H 0.35 12.12 8.58 -89.69 -0.77 11.35 16 37 H 0.35 10.17 9.06 -89.70 -0.81 9.36 16 38 H 0.41 10.36 6.89 -92.71 -0.64 9.72 16 39 H 0.12 2.70 6.93 -2.91 -0.02 2.68 16 40 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 41 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 42 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 43 H 0.13 2.02 8.04 -2.91 -0.02 2.00 16 44 H 0.14 2.99 7.95 -2.91 -0.02 2.97 16 45 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 46 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 47 H 0.17 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -73.66 399.36 0.28 -73.38 By element: Atomic # 1 Polarization: 43.30 SS G_CDS: -1.21 Total: 42.09 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 4.69 Total: -19.77 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -5.18 Total: -122.40 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.05 Total: -20.39 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -73.66 0.28 -73.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424135400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.496 kcal (2) G-P(sol) polarization free energy of solvation -73.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds