Wall clock time and date at job start Sat Apr 11 2020 05:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39775 * 119.97767 * 149.78123 * 3 2 1 5 5 C 1.37109 * 120.01752 * 179.97438 * 4 3 2 6 6 C 1.39933 * 119.98220 * 0.02562 * 5 4 3 7 7 C 1.47177 * 120.01934 * 179.97438 * 6 5 4 8 8 C 1.34813 * 119.99714 * 179.97438 * 7 6 5 9 9 C 1.46524 * 119.99565 * 179.72156 * 8 7 6 10 10 O 1.21686 * 120.00330 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99788 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99708 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47101 * 180.02562 * 12 11 9 14 14 C 1.53046 * 109.45772 * 295.02747 * 13 12 11 15 15 C 1.53197 * 109.30815 * 178.59929 * 14 13 12 16 16 N 1.46919 * 108.76506 * 54.65970 * 15 14 13 17 17 C 1.36936 * 120.63091 * 126.36310 * 16 15 14 18 18 H 1.07996 * 119.99849 * 331.85316 * 17 16 15 19 19 C 1.38809 * 120.00413 * 151.85844 * 17 16 15 20 20 N 1.31625 * 120.00007 * 343.06462 * 19 17 16 21 21 Si 1.86798 * 120.00396 * 163.06309 * 19 17 16 22 22 H 1.48496 * 109.47101 * 90.00089 * 21 19 17 23 23 H 1.48506 * 109.47158 * 210.00004 * 21 19 17 24 24 H 1.48501 * 109.47110 * 330.00005 * 21 19 17 25 25 C 1.46927 * 118.74036 * 306.37590 * 16 15 14 26 26 C 1.53040 * 109.46081 * 174.97461 * 13 12 11 27 27 C 1.39932 * 119.96238 * 0.25078 * 6 5 4 28 28 C 1.37112 * 119.97613 * 359.46742 * 27 6 5 29 29 H 1.08004 * 119.98925 * 359.97438 * 4 3 2 30 30 H 1.08008 * 120.00682 * 180.02562 * 5 4 3 31 31 H 1.07996 * 119.99507 * 0.02562 * 7 6 5 32 32 H 1.07993 * 120.00278 * 0.02562 * 8 7 6 33 33 H 0.96993 * 119.99957 * 0.02562 * 11 9 8 34 34 H 1.09001 * 109.47706 * 300.00561 * 12 11 9 35 35 H 1.09004 * 109.47337 * 60.00755 * 12 11 9 36 36 H 1.08997 * 109.46034 * 54.99593 * 13 12 11 37 37 H 1.08995 * 109.49748 * 298.56661 * 14 13 12 38 38 H 1.09003 * 109.49722 * 58.66560 * 14 13 12 39 39 H 1.09005 * 109.59647 * 294.86271 * 15 14 13 40 40 H 1.09002 * 109.69578 * 174.51140 * 15 14 13 41 41 H 0.96991 * 120.00203 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.58645 * 293.82993 * 25 16 15 43 43 H 1.08994 * 109.70591 * 173.46762 * 25 16 15 44 44 H 1.08996 * 109.49842 * 301.33363 * 26 13 12 45 45 H 1.08995 * 109.49859 * 61.40372 * 26 13 12 46 46 H 1.07998 * 120.01120 * 179.74108 * 27 6 5 47 47 H 1.08004 * 119.98716 * 180.25107 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2659 1.0472 -0.6094 5 6 4.6370 1.0489 -0.6094 6 6 5.3376 0.0023 0.0004 7 6 6.8094 0.0030 0.0004 8 6 7.4839 -1.0053 0.5884 9 6 8.9491 -1.0077 0.5830 10 8 9.5571 -0.0994 0.0482 11 7 9.6235 -2.0155 1.1714 12 6 11.0885 -2.0175 1.1665 13 6 11.5991 -3.2628 1.8941 14 6 11.1985 -3.1914 3.3695 15 6 11.6810 -4.4560 4.0872 16 7 13.1249 -4.6061 3.8608 17 6 13.9851 -4.7522 4.9162 18 1 13.7379 -4.3259 5.8773 19 6 15.1747 -5.4480 4.7509 20 7 15.3345 -6.2411 3.7127 21 14 16.5491 -5.2587 6.0018 22 1 16.3901 -6.2781 7.0698 23 1 17.8598 -5.4466 5.3293 24 1 16.4900 -3.9011 6.6005 25 6 13.6284 -4.5962 2.4806 26 6 13.1238 -3.3302 1.7808 27 6 4.6381 -1.0480 0.6052 28 6 3.2670 -1.0452 0.6093 29 1 2.7250 1.8547 -1.0803 30 1 5.1761 1.8579 -1.0800 31 1 7.3489 0.8117 -0.4700 32 1 6.9443 -1.8137 1.0592 33 1 9.1389 -2.7393 1.5980 34 1 11.4484 -2.0250 0.1377 35 1 11.4548 -1.1246 1.6731 36 1 11.1616 -4.1527 1.4418 37 1 11.6561 -2.3152 3.8287 38 1 10.1138 -3.1198 3.4489 39 1 11.1564 -5.3247 3.6895 40 1 11.4857 -4.3689 5.1560 41 1 16.1659 -6.7270 3.5970 42 1 13.2627 -5.4764 1.9519 43 1 14.7183 -4.6004 2.4870 44 1 13.4096 -3.3573 0.7293 45 1 13.5631 -2.4524 2.2547 46 1 5.1780 -1.8583 1.0724 47 1 2.7269 -1.8537 1.0796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492159140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:28 Heat of formation + Delta-G solvation = 45.394090 kcal Electronic energy + Delta-G solvation = -26823.407844 eV Core-core repulsion = 22971.608508 eV Total energy + Delta-G solvation = -3851.799336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.27069 -39.69173 -37.88005 -37.05388 -35.08069 -34.45432 -32.89950 -31.89563 -30.99255 -30.43176 -29.72664 -27.16745 -25.37387 -23.96788 -23.40645 -22.40427 -21.79313 -20.97980 -19.95112 -19.52068 -19.07366 -17.71299 -16.74324 -16.45197 -15.95753 -15.46743 -15.28758 -15.17931 -14.83338 -14.60160 -14.24625 -14.07150 -14.00325 -13.70295 -13.61323 -13.49890 -13.25904 -13.20835 -13.09367 -12.63707 -12.38449 -12.36305 -12.19215 -11.91902 -11.55671 -11.36727 -11.01562 -10.77607 -10.72476 -10.54072 -10.29488 -10.25042 -10.13826 -9.91030 -9.73508 -9.58190 -9.46954 -9.11309 -8.77536 -8.48499 -6.68569 -5.80853 -3.23180 -0.31268 0.73828 1.23664 2.14641 2.48873 3.11822 3.12988 3.31676 3.36080 3.39281 3.43491 3.45856 4.11664 4.15983 4.21911 4.48317 4.60176 4.68129 4.73922 4.87572 5.07269 5.11790 5.19481 5.31071 5.34482 5.39369 5.49417 5.53083 5.57740 5.65948 5.82916 5.83846 5.91760 6.02109 6.05110 6.11236 6.13825 6.29093 6.37718 6.42811 6.57324 6.65910 6.73392 6.78453 6.94982 6.95160 7.34210 7.45203 7.63872 7.77899 8.12247 8.43629 9.19886 9.83430 10.39915 11.27703 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026743 B = 0.001534 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.748686 B =18249.200684 C =18890.143136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.253 3.747 3 C -0.026 4.026 4 C -0.070 4.070 5 C -0.099 4.099 6 C -0.036 4.036 7 C -0.042 4.042 8 C -0.187 4.187 9 C 0.539 3.461 10 O -0.547 6.547 11 N -0.717 5.717 12 C 0.122 3.878 13 C -0.090 4.090 14 C -0.127 4.127 15 C 0.145 3.855 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.172 3.828 26 C -0.133 4.133 27 C -0.107 4.107 28 C -0.068 4.068 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.132 0.868 33 H 0.402 0.598 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.016 0.984 40 H 0.053 0.947 41 H 0.254 0.746 42 H 0.017 0.983 43 H 0.088 0.912 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.140 0.860 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.304 11.712 -9.226 26.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.063 4.063 3 C -0.030 4.030 4 C -0.091 4.091 5 C -0.117 4.117 6 C -0.036 4.036 7 C -0.061 4.061 8 C -0.207 4.207 9 C 0.327 3.673 10 O -0.427 6.427 11 N -0.367 5.367 12 C -0.001 4.001 13 C -0.109 4.109 14 C -0.166 4.166 15 C 0.018 3.982 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.205 1.205 25 C 0.046 3.954 26 C -0.173 4.173 27 C -0.125 4.125 28 C -0.089 4.089 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.159 0.841 32 H 0.150 0.850 33 H 0.236 0.764 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.158 0.842 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.450 12.227 -9.622 27.314 hybrid contribution 0.925 -0.415 0.842 1.318 sum -21.524 11.812 -8.780 26.075 Atomic orbital electron populations 1.81288 1.12086 1.07461 1.08190 1.25736 0.92690 0.93944 0.93912 1.16137 0.84335 0.98214 1.04278 1.21011 0.94244 0.96845 0.96955 1.21211 0.93532 0.98279 0.98726 1.19303 0.93013 0.94565 0.96768 1.22358 0.91294 0.97809 0.94665 1.23144 0.93760 1.00705 1.03122 1.18321 0.87851 0.82247 0.78863 1.90820 1.70407 1.36116 1.45323 1.46007 1.08315 1.25165 1.57214 1.21613 0.78065 0.99567 1.00829 1.21317 0.97931 0.95784 0.95887 1.22079 0.98432 1.01058 0.95069 1.20890 0.86444 0.93252 0.97565 1.44037 1.00258 1.84627 1.02561 1.19168 0.99606 1.27874 0.91633 0.91789 1.25033 1.00149 0.96449 0.97951 1.70025 1.25657 1.28483 1.30580 0.86324 0.81882 0.77946 0.80789 1.21412 1.21540 1.20489 1.20756 1.00305 0.90905 0.83439 1.22181 0.92961 1.02383 0.99768 1.21282 0.93642 0.98486 0.99080 1.21014 0.94199 0.96859 0.96794 0.84613 0.84191 0.84145 0.85047 0.76352 0.91670 0.91477 0.91283 0.92157 0.93483 0.96633 0.92892 0.93638 0.96462 0.89420 0.93056 0.92375 0.84218 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.15 18.54 41.84 0.78 -3.37 16 2 C 0.25 1.86 15.32 -22.47 -0.34 1.51 16 3 C -0.03 -0.14 5.74 -106.82 -0.61 -0.75 16 4 C -0.07 -0.29 9.71 -39.42 -0.38 -0.67 16 5 C -0.10 -0.42 9.75 -39.36 -0.38 -0.80 16 6 C -0.04 -0.19 5.87 -105.00 -0.62 -0.80 16 7 C -0.04 -0.28 9.45 -37.17 -0.35 -0.63 16 8 C -0.19 -1.38 9.41 -37.46 -0.35 -1.74 16 9 C 0.54 6.14 7.75 -12.92 -0.10 6.04 16 10 O -0.55 -8.38 16.23 5.20 0.08 -8.30 16 11 N -0.72 -7.70 5.27 -61.67 -0.32 -8.02 16 12 C 0.12 1.61 5.06 -4.04 -0.02 1.59 16 13 C -0.09 -1.33 2.19 -90.57 -0.20 -1.53 16 14 C -0.13 -1.96 5.25 -26.61 -0.14 -2.10 16 15 C 0.15 2.83 6.52 -3.71 -0.02 2.81 16 16 N -0.59 -14.26 2.99 -172.32 -0.52 -14.78 16 17 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 18 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 19 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 20 N -0.90 -25.72 11.19 55.49 0.62 -25.10 16 21 Si 0.90 21.33 29.59 -169.99 -5.03 16.30 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.17 3.91 5.30 -3.71 -0.02 3.89 16 26 C -0.13 -2.36 5.36 -26.61 -0.14 -2.51 16 27 C -0.11 -0.46 9.37 -39.36 -0.37 -0.83 16 28 C -0.07 -0.29 9.71 -39.42 -0.38 -0.68 16 29 H 0.14 0.34 8.06 -52.48 -0.42 -0.09 16 30 H 0.14 0.35 8.06 -52.48 -0.42 -0.07 16 31 H 0.14 1.03 7.52 -52.49 -0.39 0.63 16 32 H 0.13 0.59 6.06 -52.49 -0.32 0.27 16 33 H 0.40 3.35 7.63 -40.82 -0.31 3.04 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.58 7.15 -51.93 -0.37 0.21 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.14 0.38 6.15 -52.49 -0.32 0.05 16 47 H 0.14 0.38 8.06 -52.48 -0.42 -0.04 16 LS Contribution 395.40 15.07 5.96 5.96 Total: -1.00 -33.09 395.40 -9.75 -42.84 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.64 Total: -1.40 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -4.67 Total: -4.14 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.56 Total: -51.27 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.08 Total: -8.30 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.09 -9.75 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492159140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.231 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds