Wall clock time and date at job start Sat Apr 11 2020 05:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39775 * 119.97767 * 149.78123 * 3 2 1 5 5 C 1.37109 * 120.01752 * 179.97438 * 4 3 2 6 6 C 1.39933 * 119.98220 * 0.02562 * 5 4 3 7 7 C 1.47177 * 120.01934 * 179.97438 * 6 5 4 8 8 C 1.34813 * 119.99714 * 179.97438 * 7 6 5 9 9 C 1.46524 * 119.99565 * 179.72156 * 8 7 6 10 10 O 1.21686 * 120.00330 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99788 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99708 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47101 * 180.02562 * 12 11 9 14 14 C 1.53046 * 109.45772 * 295.02747 * 13 12 11 15 15 C 1.53197 * 109.30815 * 178.59929 * 14 13 12 16 16 N 1.46919 * 108.76506 * 54.65970 * 15 14 13 17 17 C 1.36936 * 120.63091 * 126.36310 * 16 15 14 18 18 H 1.07996 * 119.99849 * 331.85316 * 17 16 15 19 19 C 1.38809 * 120.00413 * 151.85844 * 17 16 15 20 20 N 1.31625 * 120.00007 * 343.06462 * 19 17 16 21 21 Si 1.86798 * 120.00396 * 163.06309 * 19 17 16 22 22 H 1.48496 * 109.47101 * 90.00089 * 21 19 17 23 23 H 1.48506 * 109.47158 * 210.00004 * 21 19 17 24 24 H 1.48501 * 109.47110 * 330.00005 * 21 19 17 25 25 C 1.46927 * 118.74036 * 306.37590 * 16 15 14 26 26 C 1.53040 * 109.46081 * 174.97461 * 13 12 11 27 27 C 1.39932 * 119.96238 * 0.25078 * 6 5 4 28 28 C 1.37112 * 119.97613 * 359.46742 * 27 6 5 29 29 H 1.08004 * 119.98925 * 359.97438 * 4 3 2 30 30 H 1.08008 * 120.00682 * 180.02562 * 5 4 3 31 31 H 1.07996 * 119.99507 * 0.02562 * 7 6 5 32 32 H 1.07993 * 120.00278 * 0.02562 * 8 7 6 33 33 H 0.96993 * 119.99957 * 0.02562 * 11 9 8 34 34 H 1.09001 * 109.47706 * 300.00561 * 12 11 9 35 35 H 1.09004 * 109.47337 * 60.00755 * 12 11 9 36 36 H 1.08997 * 109.46034 * 54.99593 * 13 12 11 37 37 H 1.08995 * 109.49748 * 298.56661 * 14 13 12 38 38 H 1.09003 * 109.49722 * 58.66560 * 14 13 12 39 39 H 1.09005 * 109.59647 * 294.86271 * 15 14 13 40 40 H 1.09002 * 109.69578 * 174.51140 * 15 14 13 41 41 H 0.96991 * 120.00203 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.58645 * 293.82993 * 25 16 15 43 43 H 1.08994 * 109.70591 * 173.46762 * 25 16 15 44 44 H 1.08996 * 109.49842 * 301.33363 * 26 13 12 45 45 H 1.08995 * 109.49859 * 61.40372 * 26 13 12 46 46 H 1.07998 * 120.01120 * 179.74108 * 27 6 5 47 47 H 1.08004 * 119.98716 * 180.25107 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2659 1.0472 -0.6094 5 6 4.6370 1.0489 -0.6094 6 6 5.3376 0.0023 0.0004 7 6 6.8094 0.0030 0.0004 8 6 7.4839 -1.0053 0.5884 9 6 8.9491 -1.0077 0.5830 10 8 9.5571 -0.0994 0.0482 11 7 9.6235 -2.0155 1.1714 12 6 11.0885 -2.0175 1.1665 13 6 11.5991 -3.2628 1.8941 14 6 11.1985 -3.1914 3.3695 15 6 11.6810 -4.4560 4.0872 16 7 13.1249 -4.6061 3.8608 17 6 13.9851 -4.7522 4.9162 18 1 13.7379 -4.3259 5.8773 19 6 15.1747 -5.4480 4.7509 20 7 15.3345 -6.2411 3.7127 21 14 16.5491 -5.2587 6.0018 22 1 16.3901 -6.2781 7.0698 23 1 17.8598 -5.4466 5.3293 24 1 16.4900 -3.9011 6.6005 25 6 13.6284 -4.5962 2.4806 26 6 13.1238 -3.3302 1.7808 27 6 4.6381 -1.0480 0.6052 28 6 3.2670 -1.0452 0.6093 29 1 2.7250 1.8547 -1.0803 30 1 5.1761 1.8579 -1.0800 31 1 7.3489 0.8117 -0.4700 32 1 6.9443 -1.8137 1.0592 33 1 9.1389 -2.7393 1.5980 34 1 11.4484 -2.0250 0.1377 35 1 11.4548 -1.1246 1.6731 36 1 11.1616 -4.1527 1.4418 37 1 11.6561 -2.3152 3.8287 38 1 10.1138 -3.1198 3.4489 39 1 11.1564 -5.3247 3.6895 40 1 11.4857 -4.3689 5.1560 41 1 16.1659 -6.7270 3.5970 42 1 13.2627 -5.4764 1.9519 43 1 14.7183 -4.6004 2.4870 44 1 13.4096 -3.3573 0.7293 45 1 13.5631 -2.4524 2.2547 46 1 5.1780 -1.8583 1.0724 47 1 2.7269 -1.8537 1.0796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492159140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:27 Heat of formation + Delta-G solvation = 26.708004 kcal Electronic energy + Delta-G solvation = -26824.218134 eV Core-core repulsion = 22971.608508 eV Total energy + Delta-G solvation = -3852.609625 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.89943 -40.36557 -39.29396 -37.66550 -36.39431 -35.01866 -34.43702 -32.55271 -32.19367 -31.42929 -30.97005 -28.51975 -26.36888 -25.27001 -23.85309 -23.71640 -22.91831 -22.14868 -20.89755 -20.37874 -19.89667 -18.72467 -18.28518 -17.18034 -16.78786 -16.49913 -16.27767 -16.06216 -15.67312 -15.53013 -15.27655 -15.13134 -15.03561 -14.84485 -14.67205 -14.47338 -14.25862 -13.95904 -13.86933 -13.77560 -13.60407 -13.37509 -13.10595 -12.97012 -12.79436 -12.63122 -12.53445 -12.24383 -12.00087 -11.87914 -11.81202 -11.58416 -11.28080 -11.25034 -11.07382 -10.91929 -10.50855 -10.04941 -10.02161 -9.25600 -8.63666 -7.85425 -5.29870 -0.75564 0.45185 0.69832 1.46890 1.49127 1.58185 1.59288 1.95187 2.29777 2.42317 2.53024 2.84214 2.98283 3.29406 3.63239 3.74807 3.80766 3.88745 3.95391 3.98722 4.12047 4.20294 4.28463 4.35840 4.48021 4.56178 4.58114 4.73940 4.77244 4.77792 4.85872 4.97484 5.01227 5.05948 5.13570 5.16223 5.18923 5.32759 5.34306 5.34457 5.40284 5.44727 5.51961 5.59059 5.64635 5.68757 5.82150 5.82601 6.41782 6.42288 6.65302 7.18395 7.30782 7.91332 8.41381 9.20575 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026743 B = 0.001534 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.748686 B =18249.200684 C =18890.143136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.278 3.722 3 C -0.036 4.036 4 C -0.068 4.068 5 C -0.099 4.099 6 C -0.045 4.045 7 C -0.028 4.028 8 C -0.196 4.196 9 C 0.536 3.464 10 O -0.594 6.594 11 N -0.708 5.708 12 C 0.136 3.864 13 C -0.078 4.078 14 C -0.114 4.114 15 C 0.139 3.861 16 N -0.612 5.612 17 C -0.263 4.263 18 H 0.064 0.936 19 C -0.050 4.050 20 N -0.934 5.934 21 Si 0.963 3.037 22 H -0.284 1.284 23 H -0.293 1.293 24 H -0.272 1.272 25 C 0.177 3.823 26 C -0.123 4.123 27 C -0.104 4.104 28 C -0.067 4.067 29 H 0.151 0.849 30 H 0.155 0.845 31 H 0.130 0.870 32 H 0.166 0.834 33 H 0.416 0.584 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.088 0.912 39 H 0.019 0.981 40 H 0.051 0.949 41 H 0.249 0.751 42 H -0.001 1.001 43 H 0.049 0.951 44 H 0.068 0.932 45 H 0.048 0.952 46 H 0.161 0.839 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.078 12.419 -9.093 27.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.037 4.037 3 C -0.040 4.040 4 C -0.088 4.088 5 C -0.117 4.117 6 C -0.046 4.046 7 C -0.047 4.047 8 C -0.216 4.216 9 C 0.327 3.673 10 O -0.477 6.477 11 N -0.360 5.360 12 C 0.012 3.988 13 C -0.097 4.097 14 C -0.153 4.153 15 C 0.013 3.987 16 N -0.336 5.336 17 C -0.393 4.393 18 H 0.082 0.918 19 C -0.245 4.245 20 N -0.580 5.580 21 Si 0.791 3.209 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.197 1.197 25 C 0.052 3.948 26 C -0.163 4.163 27 C -0.122 4.122 28 C -0.087 4.087 29 H 0.168 0.832 30 H 0.173 0.827 31 H 0.148 0.852 32 H 0.183 0.817 33 H 0.254 0.746 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.017 0.983 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.067 0.933 46 H 0.178 0.822 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -24.271 12.928 -9.469 29.084 hybrid contribution 1.432 -0.611 0.779 1.742 sum -22.838 12.316 -8.690 27.364 Atomic orbital electron populations 1.81310 1.13650 1.09283 1.10196 1.26032 0.92927 0.92372 0.92341 1.16277 0.83130 0.99235 1.05314 1.21176 0.94295 0.96882 0.96486 1.21413 0.93571 0.98450 0.98264 1.19315 0.92126 0.95453 0.97676 1.22403 0.92117 0.96999 0.93224 1.23101 0.91273 1.02425 1.04828 1.18924 0.89412 0.81296 0.77693 1.90801 1.71664 1.37864 1.47399 1.45852 1.07195 1.25686 1.57217 1.21248 0.79704 0.97819 1.00056 1.21145 0.95516 0.97105 0.95897 1.21931 1.00759 0.98040 0.94536 1.21094 0.83968 0.95361 0.98231 1.44322 1.02094 1.84861 1.02309 1.19499 1.00382 1.27022 0.92391 0.91809 1.25744 1.02266 0.96646 0.99868 1.70171 1.25823 1.29661 1.32390 0.85353 0.78900 0.78033 0.78629 1.21116 1.21959 1.19722 1.20557 0.98123 0.92608 0.83547 1.21985 0.95369 0.99025 0.99911 1.21498 0.93595 0.98593 0.98469 1.21198 0.94350 0.96858 0.96319 0.83171 0.82710 0.85237 0.81655 0.74610 0.92051 0.92688 0.90308 0.93295 0.89332 0.96272 0.93091 0.94190 0.98312 0.93242 0.91362 0.93272 0.82194 0.83072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.18 18.54 19.00 0.35 -8.83 16 2 C 0.28 3.75 15.32 88.33 1.35 5.10 16 3 C -0.04 -0.29 5.74 -21.29 -0.12 -0.42 16 4 C -0.07 -0.40 9.71 22.38 0.22 -0.18 16 5 C -0.10 -0.57 9.75 22.41 0.22 -0.35 16 6 C -0.04 -0.33 5.87 -20.11 -0.12 -0.45 16 7 C -0.03 -0.30 9.45 23.83 0.23 -0.08 16 8 C -0.20 -2.29 9.41 23.64 0.22 -2.07 16 9 C 0.54 11.05 7.75 86.40 0.67 11.71 16 10 O -0.59 -17.66 16.23 -4.30 -0.07 -17.73 16 11 N -0.71 -13.14 5.27 -467.25 -2.46 -15.60 16 12 C 0.14 3.29 5.06 86.38 0.44 3.72 16 13 C -0.08 -2.13 2.19 -10.76 -0.02 -2.15 16 14 C -0.11 -3.22 5.25 30.68 0.16 -3.06 16 15 C 0.14 5.25 6.52 86.37 0.56 5.81 16 16 N -0.61 -29.69 2.99 -699.10 -2.09 -31.79 16 17 C -0.26 -14.26 9.58 84.03 0.81 -13.45 16 18 H 0.06 3.38 7.88 -2.91 -0.02 3.36 16 19 C -0.05 -2.76 4.92 84.86 0.42 -2.35 16 20 N -0.93 -54.74 11.19 21.65 0.24 -54.49 16 21 Si 0.96 44.52 29.59 68.60 2.03 46.55 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 25 C 0.18 8.25 5.30 86.36 0.46 8.71 16 26 C -0.12 -4.32 5.36 30.67 0.16 -4.15 16 27 C -0.10 -0.53 9.37 22.42 0.21 -0.32 16 28 C -0.07 -0.38 9.71 22.38 0.22 -0.16 16 29 H 0.15 0.40 8.06 -2.91 -0.02 0.37 16 30 H 0.16 0.39 8.06 -2.91 -0.02 0.36 16 31 H 0.13 1.72 7.52 -2.91 -0.02 1.69 16 32 H 0.17 0.70 6.06 -2.91 -0.02 0.68 16 33 H 0.42 5.22 7.63 -92.71 -0.71 4.52 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.09 1.81 7.15 -2.39 -0.02 1.79 16 39 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 41 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 42 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 43 H 0.05 2.66 6.06 -2.39 -0.01 2.65 16 44 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.16 0.12 6.15 -2.91 -0.02 0.10 16 47 H 0.15 0.38 8.06 -2.91 -0.02 0.35 16 Total: -1.00 -74.65 395.40 4.36 -70.29 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 0.29 Total: 5.73 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 6.08 Total: 5.87 kcal Atomic # 7 Polarization: -106.76 SS G_CDS: -3.96 Total: -110.72 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.07 Total: -17.73 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -74.65 4.36 -70.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492159140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.997 kcal (2) G-P(sol) polarization free energy of solvation -74.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds