Wall clock time and date at job start Sat Apr 11 2020 05:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39772 * 120.06853 * 156.71637 * 3 2 1 5 5 C 1.38089 * 120.19462 * 179.97438 * 4 3 2 6 6 C 1.38030 * 120.33084 * 0.02562 * 5 4 3 7 7 C 1.39913 * 120.13515 * 359.97438 * 6 5 4 8 8 C 1.47224 * 120.09948 * 180.02562 * 7 6 5 9 9 C 1.34791 * 120.00287 * 136.22259 * 8 7 6 10 10 C 1.46436 * 119.99831 * 350.36824 * 9 8 7 11 11 O 1.21690 * 119.99709 * 352.94186 * 10 9 8 12 12 N 1.34776 * 119.99802 * 172.65757 * 10 9 8 13 13 C 1.46506 * 119.99734 * 180.27628 * 12 10 9 14 14 C 1.53000 * 109.47133 * 180.02562 * 13 12 10 15 15 C 1.53041 * 109.46267 * 295.03112 * 14 13 12 16 16 C 1.53185 * 109.31313 * 178.59971 * 15 14 13 17 17 N 1.46926 * 108.76801 * 54.65757 * 16 15 14 18 18 C 1.36935 * 120.63247 * 126.35833 * 17 16 15 19 19 H 1.07993 * 120.00030 * 330.78614 * 18 17 16 20 20 C 1.38817 * 119.99593 * 150.78610 * 18 17 16 21 21 N 1.31614 * 120.00138 * 343.33194 * 20 18 17 22 22 Si 1.86805 * 119.99670 * 163.32699 * 20 18 17 23 23 H 1.48502 * 109.47029 * 60.00216 * 22 20 18 24 24 H 1.48495 * 109.46914 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47121 * 300.00068 * 22 20 18 26 26 C 1.46929 * 118.73448 * 306.38464 * 17 16 15 27 27 C 1.53041 * 109.46117 * 174.97566 * 14 13 12 28 28 C 1.39305 * 120.06502 * 336.99054 * 3 2 1 29 29 H 1.07999 * 119.90496 * 359.97438 * 4 3 2 30 30 H 1.07996 * 119.83951 * 179.97438 * 5 4 3 31 31 H 1.08004 * 119.93650 * 180.02562 * 6 5 4 32 32 H 1.08003 * 120.00060 * 316.22639 * 8 7 6 33 33 H 1.07997 * 120.00690 * 170.37163 * 9 8 7 34 34 H 0.96994 * 120.00706 * 0.28759 * 12 10 9 35 35 H 1.08997 * 109.46966 * 300.00674 * 13 12 10 36 36 H 1.09000 * 109.46987 * 60.00738 * 13 12 10 37 37 H 1.09004 * 109.45846 * 55.00553 * 14 13 12 38 38 H 1.09001 * 109.49335 * 298.56757 * 15 14 13 39 39 H 1.09003 * 109.49656 * 58.66248 * 15 14 13 40 40 H 1.08997 * 109.59814 * 294.86380 * 16 15 14 41 41 H 1.09003 * 109.70098 * 174.50733 * 16 15 14 42 42 H 0.97002 * 120.00096 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.58164 * 293.81637 * 26 17 16 44 44 H 1.09002 * 109.70313 * 173.46448 * 26 17 16 45 45 H 1.09006 * 109.49440 * 301.33843 * 27 14 13 46 46 H 1.08996 * 109.49720 * 61.43276 * 27 14 13 47 47 H 1.08001 * 120.16966 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2678 1.1121 -0.4781 5 6 4.6487 1.1157 -0.4789 6 6 5.3488 0.0231 -0.0085 7 6 4.6623 -1.0968 0.4733 8 6 5.4099 -2.2616 0.9753 9 6 5.0256 -2.8686 2.1157 10 6 4.0043 -2.2522 2.9650 11 8 3.5955 -1.1345 2.7112 12 7 3.5130 -2.9251 4.0244 13 6 2.4869 -2.3108 4.8706 14 6 2.1062 -3.2774 5.9938 15 6 1.4463 -4.5213 5.3943 16 6 1.0984 -5.5019 6.5185 17 7 0.2759 -4.8045 7.5164 18 6 -0.9343 -5.3153 7.9033 19 1 -1.5131 -5.9130 7.2148 20 6 -1.4169 -5.0650 9.1806 21 7 -0.6019 -4.6321 10.1189 22 14 -3.2233 -5.3424 9.5674 23 1 -3.5681 -6.7666 9.3263 24 1 -3.4823 -5.0049 10.9901 25 1 -4.0553 -4.4769 8.6934 26 6 0.7762 -3.5481 8.0908 27 6 1.1281 -2.5895 6.9489 28 6 3.2664 -1.1088 0.4713 29 1 2.7270 1.9706 -0.8481 30 1 5.1836 1.9773 -0.8500 31 1 6.4288 0.0329 -0.0116 32 1 6.2663 -2.6296 0.4297 33 1 5.4709 -3.8096 2.4032 34 1 3.8389 -3.8160 4.2268 35 1 2.8759 -1.3884 5.3017 36 1 1.6058 -2.0874 4.2690 37 1 3.0027 -3.5697 6.5406 38 1 0.5363 -4.2326 4.8684 39 1 2.1348 -4.9978 4.6964 40 1 2.0147 -5.8612 6.9869 41 1 0.5413 -6.3455 6.1110 42 1 -0.9391 -4.4575 11.0115 43 1 1.6663 -3.7481 8.6874 44 1 0.0075 -3.0999 8.7203 45 1 1.5901 -1.6908 7.3576 46 1 0.2211 -2.3192 6.4082 47 1 2.7306 -1.9721 0.8373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492166436.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:36 Heat of formation + Delta-G solvation = 59.189543 kcal Electronic energy + Delta-G solvation = -28179.540214 eV Core-core repulsion = 24328.339094 eV Total energy + Delta-G solvation = -3851.201120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.42950 -39.18356 -37.84999 -36.56453 -35.10488 -34.09012 -32.90868 -31.55834 -30.93053 -30.11494 -29.65422 -27.03295 -24.69388 -24.07329 -23.62281 -22.37175 -21.80441 -20.97752 -20.02742 -19.20347 -18.67497 -16.97237 -16.71684 -16.61406 -16.03992 -15.58870 -15.21341 -14.89886 -14.63870 -14.36250 -14.01983 -13.98779 -13.76934 -13.56458 -13.42140 -13.27123 -13.13142 -12.97718 -12.89529 -12.45363 -12.37041 -12.30862 -11.89222 -11.80227 -11.47117 -11.35148 -10.98933 -10.72247 -10.53127 -10.42073 -10.25546 -10.23890 -10.03245 -9.90360 -9.57577 -9.46329 -9.22482 -8.86663 -8.48413 -8.46099 -6.66164 -5.79658 -3.22977 0.33626 0.73318 1.52080 2.56718 2.81256 3.16075 3.21348 3.38437 3.44158 3.46000 3.67593 3.78222 4.30034 4.49506 4.56551 4.63679 4.72061 4.87967 4.99338 5.08166 5.17924 5.20636 5.35441 5.38620 5.40576 5.58505 5.59828 5.73864 5.76439 5.83926 5.91561 6.01193 6.04344 6.07991 6.12293 6.18718 6.30269 6.39093 6.43767 6.53373 6.58505 6.67090 6.74456 6.79666 6.96261 7.34816 7.38221 7.47705 7.63774 7.79231 8.15502 8.45512 9.21209 9.84386 10.41647 11.28962 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.002236 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.593905 B =12522.076777 C =13452.745115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.256 3.744 3 C -0.042 4.042 4 C -0.062 4.062 5 C -0.135 4.135 6 C -0.071 4.071 7 C -0.073 4.073 8 C -0.030 4.030 9 C -0.203 4.203 10 C 0.531 3.469 11 O -0.534 6.534 12 N -0.716 5.716 13 C 0.123 3.877 14 C -0.090 4.090 15 C -0.127 4.127 16 C 0.146 3.854 17 N -0.592 5.592 18 C -0.254 4.254 19 H 0.063 0.937 20 C 0.004 3.996 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.173 3.827 27 C -0.133 4.133 28 C 0.018 3.982 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.401 0.599 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.052 0.948 42 H 0.254 0.746 43 H 0.018 0.982 44 H 0.085 0.915 45 H 0.050 0.950 46 H 0.057 0.943 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.026 7.094 -20.968 28.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.059 4.059 3 C -0.046 4.046 4 C -0.083 4.083 5 C -0.153 4.153 6 C -0.090 4.090 7 C -0.073 4.073 8 C -0.050 4.050 9 C -0.224 4.224 10 C 0.319 3.681 11 O -0.413 6.413 12 N -0.366 5.366 13 C 0.000 4.000 14 C -0.109 4.109 15 C -0.166 4.166 16 C 0.019 3.981 17 N -0.315 5.315 18 C -0.384 4.384 19 H 0.081 0.919 20 C -0.195 4.195 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.047 3.953 27 C -0.173 4.173 28 C -0.003 4.003 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.236 0.764 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.036 0.964 44 H 0.104 0.896 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 15.883 7.904 -20.909 27.421 hybrid contribution -0.271 -0.622 0.640 0.933 sum 15.612 7.282 -20.268 26.600 Atomic orbital electron populations 1.81260 1.12079 1.07355 1.08945 1.25726 0.92707 0.93916 0.93527 1.15780 0.84299 0.97203 1.07278 1.21177 0.94455 0.96226 0.96410 1.20869 0.93448 0.98928 1.02016 1.21387 0.99925 0.92377 0.95326 1.18723 0.92547 0.95170 1.00895 1.22316 0.96241 0.92150 0.94271 1.23108 1.00923 1.01445 0.96877 1.18513 0.82153 0.86016 0.81383 1.90869 1.60387 1.19270 1.70823 1.46114 1.41361 1.20059 1.29029 1.21590 0.90246 0.96386 0.91792 1.21309 0.99190 0.95340 0.95036 1.22075 0.99499 0.96472 0.98573 1.20885 0.94230 0.93281 0.89702 1.44020 1.19216 1.21631 1.46592 1.19121 0.93967 1.30303 0.94997 0.91881 1.25067 0.98166 1.01140 0.95147 1.70014 1.33193 1.49657 1.01834 0.86382 0.85322 0.78146 0.76997 1.20867 1.21609 1.20998 1.20731 0.98199 0.84998 0.91365 1.22179 0.97751 0.98708 0.98658 1.21128 0.92985 0.96517 0.89659 0.85359 0.85113 0.85370 0.84196 0.84611 0.76430 0.91703 0.91652 0.91291 0.92242 0.93497 0.96622 0.92898 0.93571 0.96411 0.89635 0.93087 0.92436 0.85861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.45 18.54 41.84 0.78 -5.68 16 2 C 0.26 3.32 15.32 -22.47 -0.34 2.97 16 3 C -0.04 -0.44 5.72 -107.00 -0.61 -1.06 16 4 C -0.06 -0.51 9.75 -39.06 -0.38 -0.89 16 5 C -0.13 -0.89 10.01 -39.71 -0.40 -1.28 16 6 C -0.07 -0.48 9.78 -39.03 -0.38 -0.86 16 7 C -0.07 -0.61 4.56 -105.11 -0.48 -1.09 16 8 C -0.03 -0.19 9.81 -37.15 -0.36 -0.56 16 9 C -0.20 -1.48 9.93 -37.50 -0.37 -1.86 16 10 C 0.53 5.91 6.79 -12.96 -0.09 5.82 16 11 O -0.53 -7.54 12.03 5.20 0.06 -7.48 16 12 N -0.72 -7.84 5.27 -61.70 -0.32 -8.17 16 13 C 0.12 1.68 5.06 -4.04 -0.02 1.66 16 14 C -0.09 -1.38 2.19 -90.58 -0.20 -1.58 16 15 C -0.13 -2.04 5.25 -26.61 -0.14 -2.18 16 16 C 0.15 2.94 6.52 -3.71 -0.02 2.91 16 17 N -0.59 -14.65 2.99 -172.32 -0.51 -15.16 16 18 C -0.25 -6.98 9.57 -15.06 -0.14 -7.13 16 19 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 20 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 21 N -0.90 -26.19 11.26 55.49 0.62 -25.57 16 22 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 26 C 0.17 4.05 5.29 -3.71 -0.02 4.03 16 27 C -0.13 -2.47 5.36 -26.61 -0.14 -2.61 16 28 C 0.02 0.19 6.25 -38.68 -0.24 -0.05 16 29 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 31 H 0.13 0.54 8.06 -52.48 -0.42 0.11 16 32 H 0.14 0.42 8.06 -52.48 -0.42 0.00 16 33 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.40 3.53 7.63 -40.82 -0.31 3.22 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.61 7.15 -51.93 -0.37 0.24 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.09 2.27 6.14 -51.93 -0.32 1.95 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.12 1.37 6.97 -52.49 -0.37 1.01 16 LS Contribution 390.50 15.07 5.88 5.88 Total: -1.00 -33.43 390.50 -9.78 -43.21 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.82 Total: -0.12 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -4.44 Total: -3.74 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.56 Total: -54.58 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: 0.06 Total: -7.48 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.43 -9.78 -43.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492166436.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.404 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds