Wall clock time and date at job start Sat Apr 11 2020 05:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39772 * 120.06853 * 156.71637 * 3 2 1 5 5 C 1.38089 * 120.19462 * 179.97438 * 4 3 2 6 6 C 1.38030 * 120.33084 * 0.02562 * 5 4 3 7 7 C 1.39913 * 120.13515 * 359.97438 * 6 5 4 8 8 C 1.47224 * 120.09948 * 180.02562 * 7 6 5 9 9 C 1.34791 * 120.00287 * 136.22259 * 8 7 6 10 10 C 1.46436 * 119.99831 * 350.36824 * 9 8 7 11 11 O 1.21690 * 119.99709 * 352.94186 * 10 9 8 12 12 N 1.34776 * 119.99802 * 172.65757 * 10 9 8 13 13 C 1.46506 * 119.99734 * 180.27628 * 12 10 9 14 14 C 1.53000 * 109.47133 * 180.02562 * 13 12 10 15 15 C 1.53041 * 109.46267 * 295.03112 * 14 13 12 16 16 C 1.53185 * 109.31313 * 178.59971 * 15 14 13 17 17 N 1.46926 * 108.76801 * 54.65757 * 16 15 14 18 18 C 1.36935 * 120.63247 * 126.35833 * 17 16 15 19 19 H 1.07993 * 120.00030 * 330.78614 * 18 17 16 20 20 C 1.38817 * 119.99593 * 150.78610 * 18 17 16 21 21 N 1.31614 * 120.00138 * 343.33194 * 20 18 17 22 22 Si 1.86805 * 119.99670 * 163.32699 * 20 18 17 23 23 H 1.48502 * 109.47029 * 60.00216 * 22 20 18 24 24 H 1.48495 * 109.46914 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47121 * 300.00068 * 22 20 18 26 26 C 1.46929 * 118.73448 * 306.38464 * 17 16 15 27 27 C 1.53041 * 109.46117 * 174.97566 * 14 13 12 28 28 C 1.39305 * 120.06502 * 336.99054 * 3 2 1 29 29 H 1.07999 * 119.90496 * 359.97438 * 4 3 2 30 30 H 1.07996 * 119.83951 * 179.97438 * 5 4 3 31 31 H 1.08004 * 119.93650 * 180.02562 * 6 5 4 32 32 H 1.08003 * 120.00060 * 316.22639 * 8 7 6 33 33 H 1.07997 * 120.00690 * 170.37163 * 9 8 7 34 34 H 0.96994 * 120.00706 * 0.28759 * 12 10 9 35 35 H 1.08997 * 109.46966 * 300.00674 * 13 12 10 36 36 H 1.09000 * 109.46987 * 60.00738 * 13 12 10 37 37 H 1.09004 * 109.45846 * 55.00553 * 14 13 12 38 38 H 1.09001 * 109.49335 * 298.56757 * 15 14 13 39 39 H 1.09003 * 109.49656 * 58.66248 * 15 14 13 40 40 H 1.08997 * 109.59814 * 294.86380 * 16 15 14 41 41 H 1.09003 * 109.70098 * 174.50733 * 16 15 14 42 42 H 0.97002 * 120.00096 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.58164 * 293.81637 * 26 17 16 44 44 H 1.09002 * 109.70313 * 173.46448 * 26 17 16 45 45 H 1.09006 * 109.49440 * 301.33843 * 27 14 13 46 46 H 1.08996 * 109.49720 * 61.43276 * 27 14 13 47 47 H 1.08001 * 120.16966 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2678 1.1121 -0.4781 5 6 4.6487 1.1157 -0.4789 6 6 5.3488 0.0231 -0.0085 7 6 4.6623 -1.0968 0.4733 8 6 5.4099 -2.2616 0.9753 9 6 5.0256 -2.8686 2.1157 10 6 4.0043 -2.2522 2.9650 11 8 3.5955 -1.1345 2.7112 12 7 3.5130 -2.9251 4.0244 13 6 2.4869 -2.3108 4.8706 14 6 2.1062 -3.2774 5.9938 15 6 1.4463 -4.5213 5.3943 16 6 1.0984 -5.5019 6.5185 17 7 0.2759 -4.8045 7.5164 18 6 -0.9343 -5.3153 7.9033 19 1 -1.5131 -5.9130 7.2148 20 6 -1.4169 -5.0650 9.1806 21 7 -0.6019 -4.6321 10.1189 22 14 -3.2233 -5.3424 9.5674 23 1 -3.5681 -6.7666 9.3263 24 1 -3.4823 -5.0049 10.9901 25 1 -4.0553 -4.4769 8.6934 26 6 0.7762 -3.5481 8.0908 27 6 1.1281 -2.5895 6.9489 28 6 3.2664 -1.1088 0.4713 29 1 2.7270 1.9706 -0.8481 30 1 5.1836 1.9773 -0.8500 31 1 6.4288 0.0329 -0.0116 32 1 6.2663 -2.6296 0.4297 33 1 5.4709 -3.8096 2.4032 34 1 3.8389 -3.8160 4.2268 35 1 2.8759 -1.3884 5.3017 36 1 1.6058 -2.0874 4.2690 37 1 3.0027 -3.5697 6.5406 38 1 0.5363 -4.2326 4.8684 39 1 2.1348 -4.9978 4.6964 40 1 2.0147 -5.8612 6.9869 41 1 0.5413 -6.3455 6.1110 42 1 -0.9391 -4.4575 11.0115 43 1 1.6663 -3.7481 8.6874 44 1 0.0075 -3.0999 8.7203 45 1 1.5901 -1.6908 7.3576 46 1 0.2211 -2.3192 6.4082 47 1 2.7306 -1.9721 0.8373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492166436.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:34 Heat of formation + Delta-G solvation = 39.660526 kcal Electronic energy + Delta-G solvation = -28180.387056 eV Core-core repulsion = 24328.339094 eV Total energy + Delta-G solvation = -3852.047962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.19565 -40.03304 -39.25212 -37.57278 -36.42643 -34.74599 -34.46768 -32.59383 -32.21175 -31.48505 -30.67665 -28.47860 -26.10775 -24.80554 -24.66408 -23.84296 -22.93662 -22.21869 -20.97766 -20.51216 -19.53491 -18.68141 -17.60972 -17.29068 -17.01620 -16.69313 -16.40546 -16.10332 -15.76868 -15.40115 -15.34058 -15.13764 -14.98053 -14.83539 -14.62327 -14.43190 -14.11921 -13.99015 -13.86979 -13.83405 -13.56269 -13.41582 -13.09920 -13.01439 -12.80592 -12.58954 -12.39413 -12.30974 -12.08645 -12.03306 -11.87881 -11.64619 -11.27662 -11.13387 -10.98726 -10.68662 -10.55279 -10.07153 -9.64165 -9.09502 -8.67488 -7.90011 -5.35735 -0.24146 0.04006 0.95888 1.43182 1.46043 1.52438 1.57294 1.96314 2.36522 2.42948 2.48632 2.90094 3.02836 3.24511 3.69154 3.77554 3.82633 3.92178 3.97818 4.01786 4.08780 4.21594 4.33749 4.49918 4.50965 4.53758 4.67365 4.69392 4.70951 4.78568 4.82976 4.90786 4.99996 5.05134 5.11158 5.20587 5.26325 5.26494 5.28036 5.37582 5.45471 5.49227 5.52338 5.55350 5.63193 5.63663 5.75945 5.98874 6.38059 6.41322 6.68511 7.13708 7.35954 7.85836 8.36865 9.15992 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.002236 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.593905 B =12522.076777 C =13452.745115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.276 3.724 3 C -0.071 4.071 4 C -0.066 4.066 5 C -0.130 4.130 6 C -0.062 4.062 7 C -0.088 4.088 8 C -0.014 4.014 9 C -0.214 4.214 10 C 0.524 3.476 11 O -0.570 6.570 12 N -0.712 5.712 13 C 0.140 3.860 14 C -0.077 4.077 15 C -0.113 4.113 16 C 0.140 3.860 17 N -0.612 5.612 18 C -0.265 4.265 19 H 0.062 0.938 20 C -0.049 4.049 21 N -0.933 5.933 22 Si 0.964 3.036 23 H -0.274 1.274 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.179 3.821 27 C -0.123 4.123 28 C 0.004 3.996 29 H 0.141 0.859 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.184 0.816 33 H 0.169 0.831 34 H 0.414 0.586 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.081 0.919 38 H 0.043 0.957 39 H 0.088 0.912 40 H 0.022 0.978 41 H 0.050 0.950 42 H 0.250 0.750 43 H 0.002 0.998 44 H 0.047 0.953 45 H 0.068 0.932 46 H 0.043 0.957 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.434 7.039 -23.173 32.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.038 4.038 3 C -0.074 4.074 4 C -0.086 4.086 5 C -0.148 4.148 6 C -0.081 4.081 7 C -0.088 4.088 8 C -0.033 4.033 9 C -0.234 4.234 10 C 0.315 3.685 11 O -0.452 6.452 12 N -0.363 5.363 13 C 0.016 3.984 14 C -0.096 4.096 15 C -0.152 4.152 16 C 0.015 3.985 17 N -0.336 5.336 18 C -0.395 4.395 19 H 0.080 0.920 20 C -0.245 4.245 21 N -0.579 5.579 22 Si 0.792 3.208 23 H -0.199 1.199 24 H -0.218 1.218 25 H -0.209 1.209 26 C 0.053 3.947 27 C -0.163 4.163 28 C -0.017 4.017 29 H 0.159 0.841 30 H 0.181 0.819 31 H 0.181 0.819 32 H 0.201 0.799 33 H 0.187 0.813 34 H 0.251 0.749 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.106 0.894 40 H 0.040 0.960 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.020 0.980 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 19.316 7.817 -23.146 31.144 hybrid contribution -1.217 -0.577 1.261 1.845 sum 18.099 7.240 -21.886 29.308 Atomic orbital electron populations 1.81249 1.13660 1.09286 1.11344 1.26278 0.93295 0.92294 0.91886 1.16000 0.82925 0.98799 1.09717 1.21430 0.95517 0.95721 0.95925 1.21294 0.92690 0.99976 1.00856 1.21851 1.01682 0.91319 0.93230 1.19059 0.91792 0.96854 1.01101 1.22749 0.96356 0.90489 0.93736 1.23188 1.00305 1.02937 0.96993 1.19237 0.82335 0.85678 0.81278 1.90865 1.61686 1.21020 1.71587 1.45979 1.40780 1.20652 1.28876 1.21143 0.90424 0.95743 0.91123 1.21138 0.98486 0.95023 0.94947 1.21918 0.99862 0.95906 0.97521 1.21077 0.93640 0.94045 0.89761 1.44306 1.19347 1.22548 1.47422 1.19436 0.95312 1.29790 0.95007 0.92031 1.25791 1.01838 1.01691 0.95152 1.70157 1.34689 1.51124 1.01896 0.85404 0.80764 0.78284 0.76389 1.19919 1.21807 1.20876 1.20530 0.96089 0.85564 0.92483 1.21985 0.98337 0.98406 0.97572 1.21098 0.94236 0.95922 0.90441 0.84091 0.81902 0.81890 0.79932 0.81328 0.74909 0.92183 0.93636 0.90105 0.93855 0.89371 0.96046 0.93163 0.94068 0.98012 0.93452 0.91351 0.93811 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -15.63 18.54 19.00 0.35 -15.28 16 2 C 0.28 7.54 15.32 88.33 1.35 8.89 16 3 C -0.07 -1.50 5.72 -21.41 -0.12 -1.62 16 4 C -0.07 -0.97 9.75 22.61 0.22 -0.75 16 5 C -0.13 -1.27 10.01 22.18 0.22 -1.05 16 6 C -0.06 -0.59 9.78 22.63 0.22 -0.37 16 7 C -0.09 -1.23 4.56 -20.18 -0.09 -1.32 16 8 C -0.01 -0.12 9.81 23.84 0.23 0.11 16 9 C -0.21 -2.35 9.93 23.62 0.23 -2.12 16 10 C 0.52 10.67 6.79 86.38 0.59 11.25 16 11 O -0.57 -15.68 12.03 -4.32 -0.05 -15.74 16 12 N -0.71 -14.10 5.27 -467.33 -2.46 -16.56 16 13 C 0.14 3.69 5.06 86.38 0.44 4.13 16 14 C -0.08 -2.28 2.19 -10.77 -0.02 -2.30 16 15 C -0.11 -3.49 5.25 30.67 0.16 -3.33 16 16 C 0.14 5.58 6.52 86.36 0.56 6.15 16 17 N -0.61 -30.93 2.99 -699.11 -2.09 -33.02 16 18 C -0.27 -14.89 9.57 84.03 0.80 -14.08 16 19 H 0.06 3.39 7.88 -2.91 -0.02 3.37 16 20 C -0.05 -2.80 4.91 84.86 0.42 -2.38 16 21 N -0.93 -55.90 11.26 21.65 0.24 -55.65 16 22 Si 0.96 45.91 29.59 68.60 2.03 47.94 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 25 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 26 C 0.18 8.66 5.29 86.36 0.46 9.12 16 27 C -0.12 -4.62 5.36 30.67 0.16 -4.45 16 28 C 0.00 0.08 6.25 22.86 0.14 0.23 16 29 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 30 H 0.16 0.54 8.06 -2.91 -0.02 0.51 16 31 H 0.16 0.40 8.06 -2.91 -0.02 0.38 16 32 H 0.18 -0.02 8.06 -2.91 -0.02 -0.05 16 33 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 34 H 0.41 5.94 7.63 -92.71 -0.71 5.23 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 39 H 0.09 2.02 7.15 -2.39 -0.02 2.00 16 40 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.77 16 43 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 44 H 0.05 2.63 6.14 -2.39 -0.01 2.62 16 45 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 46 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.10 2.40 6.97 -2.91 -0.02 2.38 16 Total: -1.00 -77.95 390.50 4.28 -73.67 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 0.28 Total: 8.52 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 5.98 Total: 6.11 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -3.95 Total: -120.51 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.05 Total: -15.74 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -77.95 4.28 -73.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492166436.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.328 kcal (2) G-P(sol) polarization free energy of solvation -77.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds