Wall clock time and date at job start Sat Apr 11 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39770 * 120.07497 * 206.83955 * 3 2 1 5 5 C 1.37699 * 119.91367 * 180.02562 * 4 3 2 6 6 C 1.39100 * 120.08171 * 0.02562 * 5 4 3 7 7 N 1.39549 * 119.91875 * 180.02562 * 6 5 4 8 8 C 1.46762 * 124.34980 * 5.71836 * 7 6 5 9 9 C 1.54482 * 105.47122 * 162.98824 * 8 7 6 10 10 C 1.54626 * 101.76433 * 25.41869 * 9 8 7 11 11 H 1.08999 * 110.48653 * 216.39296 * 10 9 8 12 12 N 1.46903 * 110.48590 * 93.87924 * 10 9 8 13 13 C 1.46844 * 110.99949 * 66.79931 * 12 10 9 14 14 C 1.53032 * 109.52465 * 185.83979 * 13 12 10 15 15 C 1.53126 * 109.27611 * 300.81862 * 14 13 12 16 16 C 1.50707 * 109.52249 * 177.55770 * 15 14 13 17 17 H 1.08001 * 119.99512 * 0.12684 * 16 15 14 18 18 C 1.37874 * 119.99781 * 180.12705 * 16 15 14 19 19 N 1.31509 * 120.00040 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99649 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47366 * 59.99907 * 20 18 16 22 22 H 1.48503 * 109.46963 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47184 * 299.99796 * 20 18 16 24 24 C 1.53118 * 109.21167 * 57.62455 * 15 14 13 25 25 C 1.46845 * 110.99827 * 191.00568 * 12 10 9 26 26 C 1.34421 * 124.34651 * 185.72721 * 7 6 5 27 27 O 1.21275 * 124.94461 * 0.43986 * 26 7 6 28 28 C 1.39098 * 120.16296 * 0.26352 * 6 5 4 29 29 C 1.37702 * 120.07464 * 359.46068 * 28 6 5 30 30 H 1.07996 * 120.04854 * 0.04338 * 4 3 2 31 31 H 1.08002 * 119.95491 * 179.97438 * 5 4 3 32 32 H 1.08999 * 110.24321 * 43.98838 * 8 7 6 33 33 H 1.08995 * 110.32501 * 282.02882 * 8 7 6 34 34 H 1.09000 * 110.96945 * 267.29642 * 9 8 7 35 35 H 1.09007 * 110.96813 * 143.53697 * 9 8 7 36 36 H 1.09007 * 109.46370 * 65.82065 * 13 12 10 37 37 H 1.09002 * 109.46260 * 305.85129 * 13 12 10 38 38 H 1.09004 * 109.50972 * 180.87917 * 14 13 12 39 39 H 1.08996 * 109.50728 * 60.75869 * 14 13 12 40 40 H 1.09000 * 109.52272 * 297.68529 * 15 14 13 41 41 H 0.97002 * 119.99957 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.50244 * 62.31671 * 24 15 14 43 43 H 1.08999 * 109.50333 * 182.43500 * 24 15 14 44 44 H 1.09001 * 109.46643 * 294.17619 * 25 12 10 45 45 H 1.08999 * 109.46075 * 54.14647 * 25 12 10 46 46 H 1.08002 * 119.96480 * 179.70682 * 28 6 5 47 47 H 1.08004 * 120.03858 * 180.24707 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2680 1.0802 0.5461 5 6 4.6450 1.0776 0.5439 6 6 5.3393 0.0027 -0.0014 7 7 6.7348 0.0033 -0.0014 8 6 7.5624 1.0244 0.6516 9 6 8.9706 0.4002 0.7690 10 6 8.9598 -0.6225 -0.3907 11 1 9.5050 -1.5235 -0.1098 12 7 9.5385 -0.0301 -1.6040 13 6 10.9710 0.2397 -1.4263 14 6 11.5065 0.9864 -2.6500 15 6 11.2801 0.1337 -3.9015 16 6 11.7511 0.8891 -5.1176 17 1 12.1720 1.8778 -5.0095 18 6 11.6445 0.3180 -6.3679 19 7 11.1314 -0.8857 -6.4995 20 14 12.2289 1.2541 -7.8751 21 1 13.6767 1.5550 -7.7404 22 1 12.0053 0.4277 -9.0886 23 1 11.4684 2.5241 -7.9948 24 6 9.7866 -0.1749 -4.0376 25 6 9.3006 -0.8866 -2.7728 26 6 7.4936 -0.9311 -0.5996 27 8 7.0652 -1.8827 -1.2175 28 6 4.6460 -1.0707 -0.5512 29 6 3.2690 -1.0775 -0.5473 30 1 2.7296 1.9152 0.9695 31 1 5.1865 1.9116 0.9653 32 1 7.1676 1.2534 1.6414 33 1 7.5997 1.9276 0.0427 34 1 9.0967 -0.1000 1.7292 35 1 9.7446 1.1528 0.6182 36 1 11.5067 -0.7028 -1.3127 37 1 11.1177 0.8503 -0.5353 38 1 12.5732 1.1727 -2.5247 39 1 10.9808 1.9353 -2.7562 40 1 11.8382 -0.7985 -3.8130 41 1 11.0561 -1.2874 -7.3792 42 1 9.2330 0.7552 -4.1662 43 1 9.6251 -0.8178 -4.9029 44 1 9.8441 -1.8238 -2.6530 45 1 8.2341 -1.0941 -2.8599 46 1 5.1883 -1.9014 -0.9779 47 1 2.7314 -1.9131 -0.9708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542878907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:00 Heat of formation + Delta-G solvation = 35.408996 kcal Electronic energy + Delta-G solvation = -29025.974440 eV Core-core repulsion = 25173.742118 eV Total energy + Delta-G solvation = -3852.232322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.52394 -39.41194 -37.92033 -36.96505 -36.41482 -34.29770 -32.57930 -31.45898 -30.92701 -30.04572 -29.17071 -27.41632 -25.26328 -24.33798 -23.47321 -22.36436 -21.85831 -20.87628 -19.98580 -19.19083 -18.72258 -17.87122 -17.15286 -16.29356 -16.16883 -15.34272 -15.00727 -14.74720 -14.66161 -14.46302 -14.37560 -14.14044 -13.88264 -13.86099 -13.57546 -13.27993 -13.06962 -12.96617 -12.84342 -12.63854 -12.46771 -12.41838 -12.22826 -11.63278 -11.60571 -11.50191 -11.39648 -10.94586 -10.76468 -10.58057 -10.40822 -10.27570 -10.03983 -9.76193 -9.44958 -9.39473 -9.01329 -8.72994 -8.31284 -8.22882 -8.01954 -5.98011 -4.04000 0.44856 1.03069 2.17592 2.45659 2.47590 2.83001 3.31994 3.37312 3.39259 3.62905 3.69378 3.96206 4.11360 4.25636 4.44308 4.51895 4.55470 4.64609 4.84658 4.91860 5.11643 5.14002 5.27352 5.31662 5.33533 5.47648 5.61417 5.63116 5.64670 5.73672 5.78080 5.85089 6.00531 6.05049 6.12765 6.18163 6.23663 6.54300 6.56790 6.66796 6.73245 6.78490 6.97585 7.03618 7.27597 7.31902 7.46647 7.52791 7.77555 7.82513 8.00888 8.13456 8.45664 8.99386 9.60663 11.08029 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.002601 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.297820 B =10763.613237 C =11802.699945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.262 3.738 3 C -0.070 4.070 4 C -0.038 4.038 5 C -0.164 4.164 6 C 0.209 3.791 7 N -0.554 5.554 8 C 0.102 3.898 9 C -0.128 4.128 10 C 0.049 3.951 11 H 0.078 0.922 12 N -0.515 5.515 13 C 0.059 3.941 14 C -0.105 4.105 15 C 0.047 3.953 16 C -0.512 4.512 17 H 0.054 0.946 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.102 4.102 25 C 0.049 3.951 26 C 0.535 3.465 27 O -0.495 6.495 28 C -0.164 4.164 29 C -0.036 4.036 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.029 0.971 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.021 0.979 41 H 0.260 0.740 42 H 0.042 0.958 43 H 0.095 0.905 44 H 0.028 0.972 45 H 0.066 0.934 46 H 0.166 0.834 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.295 3.008 19.206 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.053 4.053 3 C -0.075 4.075 4 C -0.059 4.059 5 C -0.185 4.185 6 C 0.112 3.888 7 N -0.276 5.276 8 C -0.019 4.019 9 C -0.166 4.166 10 C -0.063 4.063 11 H 0.096 0.904 12 N -0.243 5.243 13 C -0.068 4.068 14 C -0.143 4.143 15 C 0.029 3.971 16 C -0.551 4.551 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.718 3.282 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.140 4.140 25 C -0.078 4.078 26 C 0.324 3.676 27 O -0.368 6.368 28 C -0.184 4.184 29 C -0.057 4.057 30 H 0.153 0.847 31 H 0.155 0.845 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.039 0.961 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.113 0.887 44 H 0.046 0.954 45 H 0.085 0.915 46 H 0.183 0.817 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.503 2.779 18.631 21.568 hybrid contribution 1.126 -0.237 -0.755 1.376 sum -9.377 2.543 17.876 20.346 Atomic orbital electron populations 1.81250 1.12147 1.07901 1.09339 1.25710 0.92617 0.93578 0.93350 1.15977 0.84275 0.98537 1.08717 1.20886 0.93254 0.96311 0.95477 1.20678 0.93853 0.98560 1.05433 1.18065 0.81604 0.94418 0.94743 1.45823 1.03629 1.26413 1.51735 1.22282 0.90136 0.91404 0.98116 1.22770 0.96777 0.99487 0.97575 1.22338 0.91991 0.98149 0.93833 0.90391 1.62188 1.15562 1.45729 1.00816 1.22232 0.85909 0.99031 0.99619 1.21677 0.98638 0.99442 0.94531 1.18697 0.92519 0.94702 0.91210 1.21139 1.40416 1.02152 0.91362 0.92795 1.24970 0.95229 0.94882 0.98914 1.69857 1.45099 1.14569 1.23429 0.86700 0.79208 0.79879 0.82433 1.20375 1.21373 1.20326 1.21669 0.98193 0.99592 0.94545 1.22473 1.00470 0.93916 0.90900 1.20962 0.89162 0.80861 0.76660 1.90623 1.77961 1.29403 1.38825 1.21636 0.93967 1.00046 1.02776 1.21063 0.93476 0.96359 0.94786 0.84669 0.84514 0.89630 0.89207 0.89604 0.87570 0.95272 0.91859 0.92855 0.92364 0.96100 0.92972 0.93925 0.88720 0.95396 0.91516 0.81735 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.47 18.54 41.84 0.78 -4.70 16 2 C 0.26 2.74 15.33 -22.47 -0.34 2.39 16 3 C -0.07 -0.62 5.74 -106.83 -0.61 -1.23 16 4 C -0.04 -0.28 9.75 -39.21 -0.38 -0.66 16 5 C -0.16 -1.25 9.38 -39.46 -0.37 -1.62 16 6 C 0.21 2.13 6.60 -83.71 -0.55 1.58 16 7 N -0.55 -5.90 3.13 -112.25 -0.35 -6.25 16 8 C 0.10 0.75 6.25 -3.12 -0.02 0.73 16 9 C -0.13 -1.00 6.65 -25.10 -0.17 -1.16 16 10 C 0.05 0.60 2.66 -67.72 -0.18 0.42 16 11 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 12 N -0.52 -8.07 4.53 -226.70 -1.03 -9.10 16 13 C 0.06 0.90 5.31 -3.84 -0.02 0.88 16 14 C -0.11 -2.00 5.32 -26.65 -0.14 -2.14 16 15 C 0.05 1.13 2.16 -91.64 -0.20 0.93 16 16 C -0.51 -13.68 8.56 -34.44 -0.29 -13.97 16 17 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 19 N -0.89 -25.17 11.36 55.43 0.63 -24.54 16 20 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.10 -2.36 5.12 -26.65 -0.14 -2.49 16 25 C 0.05 0.95 5.10 -3.83 -0.02 0.93 16 26 C 0.53 7.25 6.58 -10.86 -0.07 7.18 16 27 O -0.50 -8.14 13.14 5.56 0.07 -8.07 16 28 C -0.16 -1.79 9.26 -39.46 -0.37 -2.16 16 29 C -0.04 -0.33 9.75 -39.21 -0.38 -0.71 16 30 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.14 0.71 6.99 -52.49 -0.37 0.34 16 32 H 0.09 0.38 7.68 -51.93 -0.40 -0.01 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.11 0.78 6.24 -51.92 -0.32 0.46 16 36 H 0.03 0.46 8.14 -51.92 -0.42 0.04 16 37 H 0.06 0.76 6.24 -51.93 -0.32 0.43 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.09 2.49 6.16 -51.93 -0.32 2.17 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 1.33 5.79 -51.93 -0.30 1.03 16 46 H 0.17 2.12 5.22 -52.49 -0.27 1.85 16 47 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 376.13 15.07 5.67 5.67 Total: -1.00 -31.09 376.13 -10.11 -41.20 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.50 Total: -0.71 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -4.35 Total: -9.53 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.03 Total: -44.59 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.07 Total: -8.07 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.09 -10.11 -41.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542878907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.611 kcal (2) G-P(sol) polarization free energy of solvation -31.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds