Wall clock time and date at job start Sat Apr 11 2020 05:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39770 * 120.07497 * 206.83955 * 3 2 1 5 5 C 1.37699 * 119.91367 * 180.02562 * 4 3 2 6 6 C 1.39100 * 120.08171 * 0.02562 * 5 4 3 7 7 N 1.39549 * 119.91875 * 180.02562 * 6 5 4 8 8 C 1.46762 * 124.34980 * 5.71836 * 7 6 5 9 9 C 1.54482 * 105.47122 * 162.98824 * 8 7 6 10 10 C 1.54626 * 101.76433 * 25.41869 * 9 8 7 11 11 H 1.08999 * 110.48653 * 216.39296 * 10 9 8 12 12 N 1.46903 * 110.48590 * 93.87924 * 10 9 8 13 13 C 1.46844 * 110.99949 * 66.79931 * 12 10 9 14 14 C 1.53032 * 109.52465 * 185.83979 * 13 12 10 15 15 C 1.53126 * 109.27611 * 300.81862 * 14 13 12 16 16 C 1.50707 * 109.52249 * 177.55770 * 15 14 13 17 17 H 1.08001 * 119.99512 * 0.12684 * 16 15 14 18 18 C 1.37874 * 119.99781 * 180.12705 * 16 15 14 19 19 N 1.31509 * 120.00040 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99649 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47366 * 59.99907 * 20 18 16 22 22 H 1.48503 * 109.46963 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47184 * 299.99796 * 20 18 16 24 24 C 1.53118 * 109.21167 * 57.62455 * 15 14 13 25 25 C 1.46845 * 110.99827 * 191.00568 * 12 10 9 26 26 C 1.34421 * 124.34651 * 185.72721 * 7 6 5 27 27 O 1.21275 * 124.94461 * 0.43986 * 26 7 6 28 28 C 1.39098 * 120.16296 * 0.26352 * 6 5 4 29 29 C 1.37702 * 120.07464 * 359.46068 * 28 6 5 30 30 H 1.07996 * 120.04854 * 0.04338 * 4 3 2 31 31 H 1.08002 * 119.95491 * 179.97438 * 5 4 3 32 32 H 1.08999 * 110.24321 * 43.98838 * 8 7 6 33 33 H 1.08995 * 110.32501 * 282.02882 * 8 7 6 34 34 H 1.09000 * 110.96945 * 267.29642 * 9 8 7 35 35 H 1.09007 * 110.96813 * 143.53697 * 9 8 7 36 36 H 1.09007 * 109.46370 * 65.82065 * 13 12 10 37 37 H 1.09002 * 109.46260 * 305.85129 * 13 12 10 38 38 H 1.09004 * 109.50972 * 180.87917 * 14 13 12 39 39 H 1.08996 * 109.50728 * 60.75869 * 14 13 12 40 40 H 1.09000 * 109.52272 * 297.68529 * 15 14 13 41 41 H 0.97002 * 119.99957 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.50244 * 62.31671 * 24 15 14 43 43 H 1.08999 * 109.50333 * 182.43500 * 24 15 14 44 44 H 1.09001 * 109.46643 * 294.17619 * 25 12 10 45 45 H 1.08999 * 109.46075 * 54.14647 * 25 12 10 46 46 H 1.08002 * 119.96480 * 179.70682 * 28 6 5 47 47 H 1.08004 * 120.03858 * 180.24707 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2680 1.0802 0.5461 5 6 4.6450 1.0776 0.5439 6 6 5.3393 0.0027 -0.0014 7 7 6.7348 0.0033 -0.0014 8 6 7.5624 1.0244 0.6516 9 6 8.9706 0.4002 0.7690 10 6 8.9598 -0.6225 -0.3907 11 1 9.5050 -1.5235 -0.1098 12 7 9.5385 -0.0301 -1.6040 13 6 10.9710 0.2397 -1.4263 14 6 11.5065 0.9864 -2.6500 15 6 11.2801 0.1337 -3.9015 16 6 11.7511 0.8891 -5.1176 17 1 12.1720 1.8778 -5.0095 18 6 11.6445 0.3180 -6.3679 19 7 11.1314 -0.8857 -6.4995 20 14 12.2289 1.2541 -7.8751 21 1 13.6767 1.5550 -7.7404 22 1 12.0053 0.4277 -9.0886 23 1 11.4684 2.5241 -7.9948 24 6 9.7866 -0.1749 -4.0376 25 6 9.3006 -0.8866 -2.7728 26 6 7.4936 -0.9311 -0.5996 27 8 7.0652 -1.8827 -1.2175 28 6 4.6460 -1.0707 -0.5512 29 6 3.2690 -1.0775 -0.5473 30 1 2.7296 1.9152 0.9695 31 1 5.1865 1.9116 0.9653 32 1 7.1676 1.2534 1.6414 33 1 7.5997 1.9276 0.0427 34 1 9.0967 -0.1000 1.7292 35 1 9.7446 1.1528 0.6182 36 1 11.5067 -0.7028 -1.3127 37 1 11.1177 0.8503 -0.5353 38 1 12.5732 1.1727 -2.5247 39 1 10.9808 1.9353 -2.7562 40 1 11.8382 -0.7985 -3.8130 41 1 11.0561 -1.2874 -7.3792 42 1 9.2330 0.7552 -4.1662 43 1 9.6251 -0.8178 -4.9029 44 1 9.8441 -1.8238 -2.6530 45 1 8.2341 -1.0941 -2.8599 46 1 5.1883 -1.9014 -0.9779 47 1 2.7314 -1.9131 -0.9708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542878907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:59 Heat of formation + Delta-G solvation = 17.251135 kcal Electronic energy + Delta-G solvation = -29026.761824 eV Core-core repulsion = 25173.742118 eV Total energy + Delta-G solvation = -3853.019706 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.39517 -40.27978 -39.23285 -37.89951 -37.34499 -35.77751 -33.96800 -32.35676 -32.12593 -31.51798 -30.09306 -28.56315 -26.88746 -25.13285 -24.43391 -23.60558 -23.40409 -21.78689 -20.89661 -20.39230 -19.93345 -18.70518 -18.50763 -17.96702 -17.03907 -16.58745 -16.18634 -15.90163 -15.70599 -15.52296 -15.32460 -15.02691 -14.84911 -14.73790 -14.64066 -14.46641 -14.40882 -14.28990 -13.92504 -13.81698 -13.74775 -13.47844 -13.14540 -12.94057 -12.79272 -12.78292 -12.43530 -12.33226 -12.27486 -12.11090 -11.97399 -11.82926 -11.37208 -11.11522 -10.86504 -10.76817 -10.48873 -10.36156 -10.05922 -9.35018 -8.98851 -8.06412 -6.20182 -0.31222 0.36913 1.22220 1.42167 1.43415 1.50772 1.62641 1.71599 2.01589 2.44614 2.88421 2.91253 3.00540 3.12441 3.20803 3.52817 3.86357 3.92025 3.97507 4.16391 4.17633 4.25625 4.31165 4.40390 4.43690 4.54183 4.59482 4.60664 4.72740 4.76652 4.86060 4.95745 4.98772 5.04264 5.07068 5.11976 5.15353 5.21325 5.25390 5.34757 5.34953 5.44373 5.58413 5.63657 5.88405 5.92667 5.99348 6.00852 6.16863 6.26088 6.41202 6.46196 6.89807 6.93233 7.48178 8.97742 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.002601 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.297820 B =10763.613237 C =11802.699945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.285 3.715 3 C -0.074 4.074 4 C -0.025 4.025 5 C -0.149 4.149 6 C 0.191 3.809 7 N -0.550 5.550 8 C 0.095 3.905 9 C -0.114 4.114 10 C 0.043 3.957 11 H 0.077 0.923 12 N -0.514 5.514 13 C 0.065 3.935 14 C -0.098 4.098 15 C 0.042 3.958 16 C -0.529 4.529 17 H 0.056 0.944 18 C 0.008 3.992 19 N -0.921 5.921 20 Si 0.952 3.048 21 H -0.269 1.269 22 H -0.289 1.289 23 H -0.271 1.271 24 C -0.091 4.091 25 C 0.068 3.932 26 C 0.521 3.479 27 O -0.540 6.540 28 C -0.186 4.186 29 C -0.036 4.036 30 H 0.167 0.833 31 H 0.173 0.827 32 H 0.127 0.873 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.023 0.977 37 H 0.115 0.885 38 H 0.061 0.939 39 H 0.058 0.942 40 H -0.015 1.015 41 H 0.258 0.742 42 H 0.030 0.970 43 H 0.053 0.947 44 H 0.010 0.990 45 H 0.057 0.943 46 H 0.138 0.862 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.031 6.163 22.317 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.029 4.029 3 C -0.079 4.079 4 C -0.046 4.046 5 C -0.169 4.169 6 C 0.095 3.905 7 N -0.271 5.271 8 C -0.025 4.025 9 C -0.152 4.152 10 C -0.069 4.069 11 H 0.095 0.905 12 N -0.241 5.241 13 C -0.062 4.062 14 C -0.136 4.136 15 C 0.024 3.976 16 C -0.567 4.567 17 H 0.075 0.925 18 C -0.190 4.190 19 N -0.561 5.561 20 Si 0.778 3.222 21 H -0.194 1.194 22 H -0.215 1.215 23 H -0.196 1.196 24 C -0.130 4.130 25 C -0.060 4.060 26 C 0.310 3.690 27 O -0.417 6.417 28 C -0.207 4.207 29 C -0.057 4.057 30 H 0.184 0.816 31 H 0.190 0.810 32 H 0.145 0.855 33 H 0.112 0.888 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.041 0.959 37 H 0.132 0.868 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.004 0.996 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.072 0.928 44 H 0.028 0.972 45 H 0.076 0.924 46 H 0.156 0.844 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.237 5.978 21.783 24.800 hybrid contribution 1.021 -1.236 -1.708 2.343 sum -9.216 4.742 20.075 22.593 Atomic orbital electron populations 1.81276 1.13380 1.09339 1.10943 1.25841 0.92653 0.92300 0.92074 1.16039 0.83384 0.99146 1.09336 1.21252 0.93305 0.96179 0.93886 1.20997 0.93832 0.98185 1.03869 1.18310 0.81620 0.95107 0.95493 1.45915 1.03980 1.26168 1.50987 1.22650 0.89488 0.90338 1.00007 1.22861 0.97510 0.98339 0.96457 1.22505 0.90888 0.99844 0.93647 0.90535 1.62075 1.16085 1.44841 1.01054 1.22220 0.85203 0.99139 0.99606 1.21533 0.99528 0.98747 0.93771 1.18685 0.91984 0.93793 0.93148 1.21591 1.40088 1.02402 0.92651 0.92539 1.25788 0.95525 0.95708 1.01977 1.70032 1.46234 1.16070 1.23754 0.85704 0.79091 0.78632 0.78786 1.19392 1.21482 1.19614 1.21393 0.98059 0.98309 0.95190 1.22042 0.99266 0.93234 0.91443 1.21308 0.90146 0.80955 0.76591 1.90609 1.78758 1.31423 1.40865 1.21487 0.94599 1.00344 1.04250 1.21079 0.92950 0.96943 0.94762 0.81568 0.80997 0.85510 0.88750 0.86563 0.86213 0.95866 0.86752 0.92051 0.92316 0.99646 0.93290 0.95107 0.92801 0.97209 0.92448 0.84446 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.71 18.54 19.01 0.35 -11.36 16 2 C 0.29 5.60 15.33 88.33 1.35 6.95 16 3 C -0.07 -1.18 5.74 -21.29 -0.12 -1.30 16 4 C -0.03 -0.27 9.75 22.51 0.22 -0.06 16 5 C -0.15 -1.64 9.38 22.35 0.21 -1.43 16 6 C 0.19 3.54 6.60 38.33 0.25 3.79 16 7 N -0.55 -10.47 3.13 -627.64 -1.96 -12.43 16 8 C 0.10 0.94 6.25 86.83 0.54 1.48 16 9 C -0.11 -1.22 6.65 31.65 0.21 -1.01 16 10 C 0.04 0.97 2.66 44.91 0.12 1.09 16 11 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 12 N -0.51 -15.56 4.53 -871.15 -3.95 -19.51 16 13 C 0.07 1.85 5.31 86.32 0.46 2.30 16 14 C -0.10 -3.64 5.32 30.65 0.16 -3.48 16 15 C 0.04 2.09 2.16 -11.46 -0.02 2.07 16 16 C -0.53 -28.89 8.56 25.60 0.22 -28.67 16 17 H 0.06 2.98 7.74 -2.91 -0.02 2.95 16 18 C 0.01 0.45 5.30 84.65 0.45 0.90 16 19 N -0.92 -54.51 11.36 21.45 0.24 -54.26 16 20 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 24 C -0.09 -4.45 5.12 30.65 0.16 -4.29 16 25 C 0.07 2.77 5.10 86.33 0.44 3.21 16 26 C 0.52 13.96 6.58 87.90 0.58 14.54 16 27 O -0.54 -18.86 13.14 -3.01 -0.04 -18.90 16 28 C -0.19 -4.15 9.26 22.35 0.21 -3.94 16 29 C -0.04 -0.66 9.75 22.51 0.22 -0.44 16 30 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 31 H 0.17 0.70 6.99 -2.91 -0.02 0.68 16 32 H 0.13 0.28 7.68 -2.39 -0.02 0.26 16 33 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.12 1.02 6.24 -2.38 -0.01 1.01 16 36 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.11 2.16 6.24 -2.39 -0.01 2.15 16 38 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 40 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 41 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 42 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.05 3.05 6.16 -2.39 -0.01 3.04 16 44 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.06 2.44 5.79 -2.39 -0.01 2.43 16 46 H 0.14 3.88 5.22 -2.91 -0.02 3.87 16 47 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -74.68 376.13 3.32 -71.36 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 0.99 Total: 7.50 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 5.65 Total: -8.28 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -5.32 Total: -97.56 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.04 Total: -18.90 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -74.68 3.32 -71.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542878907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.610 kcal (2) G-P(sol) polarization free energy of solvation -74.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds