Wall clock time and date at job start Sat Apr 11 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39774 * 120.08182 * 260.73329 * 3 2 1 5 5 C 1.37692 * 119.91629 * 179.97438 * 4 3 2 6 6 C 1.39101 * 120.08404 * 359.97438 * 5 4 3 7 7 N 1.39556 * 119.91966 * 179.97438 * 6 5 4 8 8 C 1.46760 * 124.34823 * 185.77839 * 7 6 5 9 9 C 1.54482 * 105.47346 * 197.04093 * 8 7 6 10 10 C 1.54630 * 101.76440 * 334.58586 * 9 8 7 11 11 H 1.08997 * 110.59943 * 143.53167 * 10 9 8 12 12 N 1.46902 * 110.48679 * 266.12288 * 10 9 8 13 13 C 1.46847 * 110.99685 * 289.43537 * 12 10 9 14 14 C 1.53037 * 109.52355 * 185.84119 * 13 12 10 15 15 C 1.53123 * 109.27556 * 300.81671 * 14 13 12 16 16 C 1.50698 * 109.51936 * 177.56285 * 15 14 13 17 17 H 1.07997 * 120.00295 * 334.96287 * 16 15 14 18 18 C 1.37874 * 119.99868 * 154.97237 * 16 15 14 19 19 N 1.31515 * 120.00250 * 5.12001 * 18 16 15 20 20 Si 1.86802 * 119.99984 * 185.12327 * 18 16 15 21 21 H 1.48504 * 109.46890 * 269.99605 * 20 18 16 22 22 H 1.48492 * 109.47214 * 29.99656 * 20 18 16 23 23 H 1.48500 * 109.47000 * 149.99822 * 20 18 16 24 24 C 1.53112 * 109.15920 * 57.65596 * 15 14 13 25 25 C 1.46851 * 111.00106 * 53.63920 * 12 10 9 26 26 C 1.34414 * 124.34896 * 5.80659 * 7 6 5 27 27 O 1.21287 * 124.94499 * 359.60174 * 26 7 6 28 28 C 1.39098 * 120.15925 * 0.25989 * 6 5 4 29 29 C 1.37700 * 120.08268 * 359.47975 * 28 6 5 30 30 H 1.07993 * 120.03851 * 359.95910 * 4 3 2 31 31 H 1.08003 * 119.95830 * 180.02562 * 5 4 3 32 32 H 1.09003 * 110.24294 * 316.03988 * 8 7 6 33 33 H 1.09002 * 110.24788 * 77.95304 * 8 7 6 34 34 H 1.09000 * 110.96933 * 216.46823 * 9 8 7 35 35 H 1.09001 * 110.96657 * 92.70247 * 9 8 7 36 36 H 1.09000 * 109.46570 * 65.81692 * 13 12 10 37 37 H 1.09001 * 109.45120 * 305.84773 * 13 12 10 38 38 H 1.09002 * 109.50120 * 180.87732 * 14 13 12 39 39 H 1.09000 * 109.53758 * 60.77560 * 14 13 12 40 40 H 1.09002 * 109.51876 * 297.68778 * 15 14 13 41 41 H 0.97000 * 120.00047 * 355.00469 * 19 18 16 42 42 H 1.08998 * 109.50912 * 62.28672 * 24 15 14 43 43 H 1.09008 * 109.50215 * 182.40670 * 24 15 14 44 44 H 1.08998 * 109.45987 * 294.18081 * 25 12 10 45 45 H 1.08997 * 109.46104 * 54.16101 * 25 12 10 46 46 H 1.08007 * 119.95836 * 179.72389 * 28 6 5 47 47 H 1.07996 * 120.04173 * 180.26058 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2685 0.1957 1.1937 5 6 4.6454 0.1952 1.1899 6 6 5.3392 0.0003 0.0001 7 7 6.7348 0.0009 0.0001 8 6 7.5629 -0.0735 -1.2093 9 6 8.9708 -0.4798 -0.7204 10 6 8.9596 0.0363 0.7372 11 1 9.5029 -0.6467 1.3901 12 7 9.5384 1.3846 0.8096 13 6 10.9877 1.3483 0.5757 14 6 11.5773 2.7423 0.8017 15 6 10.9116 3.7341 -0.1562 16 6 11.4451 5.1195 0.1026 17 1 11.8452 5.3715 1.0735 18 6 11.4221 6.0655 -0.9002 19 7 10.8443 5.7918 -2.0494 20 14 12.2119 7.7361 -0.6264 21 1 11.2070 8.6720 -0.0609 22 1 13.3474 7.5976 0.3204 23 1 12.7090 8.2667 -1.9213 24 6 9.3981 3.7171 0.0747 25 6 8.8716 2.2948 -0.1302 26 6 7.4932 0.0692 1.1077 27 8 7.0644 0.1454 2.2397 28 6 4.6455 -0.1893 -1.1905 29 6 3.2685 -0.1954 -1.1936 30 1 2.7304 0.3469 2.1177 31 1 5.1873 0.3454 2.1119 32 1 7.1682 -0.8272 -1.8908 33 1 7.5990 0.8980 -1.7021 34 1 9.7452 0.0176 -1.3044 35 1 9.0968 -1.5621 -0.7500 36 1 11.1824 1.0333 -0.4495 37 1 11.4492 0.6424 1.2663 38 1 12.6506 2.7184 0.6129 39 1 11.3957 3.0524 1.8308 40 1 11.1272 3.4471 -1.1854 41 1 10.4984 4.9014 -2.2184 42 1 9.1815 4.0422 1.0923 43 1 8.9143 4.3897 -0.6336 44 1 9.0762 1.9755 -1.1521 45 1 7.7964 2.2766 0.0476 46 1 5.1876 -0.3359 -2.1131 47 1 2.7306 -0.3468 -2.1177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542878908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:04 Heat of formation + Delta-G solvation = 33.195937 kcal Electronic energy + Delta-G solvation = -29308.987928 eV Core-core repulsion = 25456.659641 eV Total energy + Delta-G solvation = -3852.328288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.77894 -39.54235 -38.22457 -36.92351 -36.38473 -34.53400 -32.61837 -31.49689 -30.82707 -30.24972 -29.30410 -27.57948 -24.98010 -24.37829 -23.55473 -22.51149 -22.17761 -21.27233 -19.98560 -19.22789 -18.98238 -17.97706 -17.26001 -16.77053 -16.11292 -15.43272 -15.03926 -14.89380 -14.80643 -14.49264 -14.19111 -13.95673 -13.92269 -13.77701 -13.75918 -13.64433 -13.27590 -13.17368 -12.99422 -12.74371 -12.56244 -12.40177 -12.28316 -11.82412 -11.75630 -11.58297 -11.44910 -11.08195 -10.79830 -10.61493 -10.50954 -10.39306 -10.14449 -9.88944 -9.63718 -9.42873 -9.26091 -8.55087 -8.34034 -8.27363 -8.09150 -6.38717 -4.08350 0.41213 0.99692 2.13022 2.38946 2.43602 2.79397 3.41949 3.44557 3.59912 3.60167 3.66612 3.84196 4.00434 4.21333 4.47142 4.49094 4.51205 4.56277 4.62640 4.83992 5.05021 5.10038 5.18957 5.19705 5.30821 5.35285 5.40259 5.53410 5.57407 5.59522 5.69593 5.78050 5.78734 5.82982 6.01339 6.03959 6.08225 6.15976 6.37373 6.43993 6.61061 6.66184 6.75734 6.79714 6.97439 7.21436 7.22890 7.25425 7.46864 7.61555 7.77100 8.21986 8.42855 8.86002 9.62797 11.00643 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.002719 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.535898 B =10293.970473 C =11323.507266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.262 3.738 3 C -0.069 4.069 4 C -0.036 4.036 5 C -0.163 4.163 6 C 0.207 3.793 7 N -0.560 5.560 8 C 0.091 3.909 9 C -0.170 4.170 10 C 0.056 3.944 11 H 0.119 0.881 12 N -0.510 5.510 13 C 0.059 3.941 14 C -0.101 4.101 15 C 0.032 3.968 16 C -0.590 4.590 17 H 0.049 0.951 18 C 0.019 3.981 19 N -0.915 5.915 20 Si 1.067 2.933 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.285 1.285 24 C -0.104 4.104 25 C 0.049 3.951 26 C 0.534 3.466 27 O -0.489 6.489 28 C -0.164 4.164 29 C -0.038 4.038 30 H 0.136 0.864 31 H 0.166 0.834 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.032 0.968 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.025 0.975 41 H 0.268 0.732 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.034 0.966 45 H 0.056 0.944 46 H 0.137 0.863 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.258 -16.758 0.020 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.105 5.105 2 C -0.053 4.053 3 C -0.073 4.073 4 C -0.057 4.057 5 C -0.183 4.183 6 C 0.110 3.890 7 N -0.282 5.282 8 C -0.031 4.031 9 C -0.209 4.209 10 C -0.056 4.056 11 H 0.137 0.863 12 N -0.235 5.235 13 C -0.068 4.068 14 C -0.139 4.139 15 C 0.013 3.987 16 C -0.628 4.628 17 H 0.067 0.933 18 C -0.184 4.184 19 N -0.551 5.551 20 Si 0.896 3.104 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.211 1.211 24 C -0.143 4.143 25 C -0.078 4.078 26 C 0.322 3.678 27 O -0.361 6.361 28 C -0.185 4.185 29 C -0.059 4.059 30 H 0.154 0.846 31 H 0.183 0.817 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.050 0.950 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.052 0.948 45 H 0.074 0.926 46 H 0.155 0.845 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.016 -15.035 0.437 17.537 hybrid contribution 0.240 -1.786 -0.260 1.821 sum -8.776 -16.822 0.177 18.974 Atomic orbital electron populations 1.81251 1.12126 1.09677 1.07431 1.25692 0.92602 0.93334 0.93681 1.15984 0.84311 1.11615 0.95419 1.21062 0.93453 0.94475 0.96701 1.21627 0.93961 1.03503 0.99225 1.18056 0.81487 0.94695 0.94737 1.45896 1.03763 1.68916 1.09614 1.22472 0.90369 1.03595 0.86651 1.23317 0.96553 1.02973 0.98064 1.22495 0.92546 0.94249 0.96311 0.86294 1.62085 1.04691 1.04142 1.52598 1.22250 0.85747 1.00067 0.98733 1.21634 0.98751 0.92216 1.01301 1.18877 0.90467 0.94932 0.94428 1.21963 1.43931 0.96993 0.99922 0.93295 1.25782 0.95217 1.04106 0.93337 1.70789 1.35900 1.23190 1.25251 0.83570 0.76213 0.75058 0.75596 1.21522 1.21488 1.21099 1.21806 0.99837 0.91312 1.01312 1.22493 0.97134 0.95472 0.92747 1.20957 0.89042 0.74121 0.83645 1.90600 1.77785 1.46363 1.21314 1.20694 0.93920 1.06884 0.97032 1.20897 0.93219 0.95068 0.96689 0.84577 0.81713 0.89329 0.89155 0.88058 0.89157 0.94980 0.91605 0.92396 0.92287 0.95652 0.92021 0.92629 0.92247 0.94806 0.92567 0.84550 0.84605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.47 18.54 41.83 0.78 -4.70 16 2 C 0.26 2.75 15.33 -22.48 -0.34 2.40 16 3 C -0.07 -0.61 5.74 -106.82 -0.61 -1.22 16 4 C -0.04 -0.33 9.75 -39.21 -0.38 -0.71 16 5 C -0.16 -1.77 9.26 -39.46 -0.37 -2.14 16 6 C 0.21 2.13 6.60 -83.70 -0.55 1.58 16 7 N -0.56 -5.96 2.73 -112.24 -0.31 -6.27 16 8 C 0.09 0.75 5.52 -3.12 -0.02 0.73 16 9 C -0.17 -1.42 6.04 -25.10 -0.15 -1.57 16 10 C 0.06 0.66 3.15 -67.72 -0.21 0.45 16 11 H 0.12 1.25 8.07 -51.93 -0.42 0.83 16 12 N -0.51 -7.67 4.66 -226.70 -1.06 -8.73 16 13 C 0.06 0.88 5.19 -3.83 -0.02 0.86 16 14 C -0.10 -1.93 5.36 -26.65 -0.14 -2.07 16 15 C 0.03 0.72 1.80 -91.65 -0.16 0.56 16 16 C -0.59 -15.67 8.32 -34.44 -0.29 -15.96 16 17 H 0.05 1.32 7.81 -52.49 -0.41 0.91 16 18 C 0.02 0.53 5.45 -17.82 -0.10 0.43 16 19 N -0.91 -26.20 13.63 55.43 0.76 -25.44 16 20 Si 1.07 24.48 29.91 -169.99 -5.08 19.40 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 24 C -0.10 -2.20 5.29 -26.65 -0.14 -2.34 16 25 C 0.05 0.80 3.74 -3.83 -0.01 0.78 16 26 C 0.53 6.99 6.36 -10.86 -0.07 6.92 16 27 O -0.49 -7.78 14.79 5.55 0.08 -7.70 16 28 C -0.16 -1.30 9.39 -39.46 -0.37 -1.67 16 29 C -0.04 -0.28 9.75 -39.20 -0.38 -0.67 16 30 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.17 2.10 5.22 -52.48 -0.27 1.82 16 32 H 0.09 0.48 7.22 -51.93 -0.38 0.11 16 33 H 0.09 0.82 6.27 -51.93 -0.33 0.49 16 34 H 0.10 0.91 5.86 -51.93 -0.30 0.61 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.03 0.45 6.76 -51.93 -0.35 0.10 16 37 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.03 0.62 6.91 -51.93 -0.36 0.26 16 41 H 0.27 7.53 6.38 -40.82 -0.26 7.27 16 42 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.06 1.38 7.81 -51.92 -0.41 0.97 16 44 H 0.03 0.52 5.73 -51.93 -0.30 0.22 16 45 H 0.06 0.91 6.35 -51.93 -0.33 0.58 16 46 H 0.14 0.78 6.72 -52.48 -0.35 0.43 16 47 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -31.52 371.46 -9.78 -41.30 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.21 Total: 0.18 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -4.33 Total: -13.65 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.17 Total: -45.14 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.08 Total: -7.70 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.08 Total: 19.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.52 -9.78 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542878908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.496 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds