Wall clock time and date at job start Sat Apr 11 2020 05:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39774 * 120.08182 * 260.73329 * 3 2 1 5 5 C 1.37692 * 119.91629 * 179.97438 * 4 3 2 6 6 C 1.39101 * 120.08404 * 359.97438 * 5 4 3 7 7 N 1.39556 * 119.91966 * 179.97438 * 6 5 4 8 8 C 1.46760 * 124.34823 * 185.77839 * 7 6 5 9 9 C 1.54482 * 105.47346 * 197.04093 * 8 7 6 10 10 C 1.54630 * 101.76440 * 334.58586 * 9 8 7 11 11 H 1.08997 * 110.59943 * 143.53167 * 10 9 8 12 12 N 1.46902 * 110.48679 * 266.12288 * 10 9 8 13 13 C 1.46847 * 110.99685 * 289.43537 * 12 10 9 14 14 C 1.53037 * 109.52355 * 185.84119 * 13 12 10 15 15 C 1.53123 * 109.27556 * 300.81671 * 14 13 12 16 16 C 1.50698 * 109.51936 * 177.56285 * 15 14 13 17 17 H 1.07997 * 120.00295 * 334.96287 * 16 15 14 18 18 C 1.37874 * 119.99868 * 154.97237 * 16 15 14 19 19 N 1.31515 * 120.00250 * 5.12001 * 18 16 15 20 20 Si 1.86802 * 119.99984 * 185.12327 * 18 16 15 21 21 H 1.48504 * 109.46890 * 269.99605 * 20 18 16 22 22 H 1.48492 * 109.47214 * 29.99656 * 20 18 16 23 23 H 1.48500 * 109.47000 * 149.99822 * 20 18 16 24 24 C 1.53112 * 109.15920 * 57.65596 * 15 14 13 25 25 C 1.46851 * 111.00106 * 53.63920 * 12 10 9 26 26 C 1.34414 * 124.34896 * 5.80659 * 7 6 5 27 27 O 1.21287 * 124.94499 * 359.60174 * 26 7 6 28 28 C 1.39098 * 120.15925 * 0.25989 * 6 5 4 29 29 C 1.37700 * 120.08268 * 359.47975 * 28 6 5 30 30 H 1.07993 * 120.03851 * 359.95910 * 4 3 2 31 31 H 1.08003 * 119.95830 * 180.02562 * 5 4 3 32 32 H 1.09003 * 110.24294 * 316.03988 * 8 7 6 33 33 H 1.09002 * 110.24788 * 77.95304 * 8 7 6 34 34 H 1.09000 * 110.96933 * 216.46823 * 9 8 7 35 35 H 1.09001 * 110.96657 * 92.70247 * 9 8 7 36 36 H 1.09000 * 109.46570 * 65.81692 * 13 12 10 37 37 H 1.09001 * 109.45120 * 305.84773 * 13 12 10 38 38 H 1.09002 * 109.50120 * 180.87732 * 14 13 12 39 39 H 1.09000 * 109.53758 * 60.77560 * 14 13 12 40 40 H 1.09002 * 109.51876 * 297.68778 * 15 14 13 41 41 H 0.97000 * 120.00047 * 355.00469 * 19 18 16 42 42 H 1.08998 * 109.50912 * 62.28672 * 24 15 14 43 43 H 1.09008 * 109.50215 * 182.40670 * 24 15 14 44 44 H 1.08998 * 109.45987 * 294.18081 * 25 12 10 45 45 H 1.08997 * 109.46104 * 54.16101 * 25 12 10 46 46 H 1.08007 * 119.95836 * 179.72389 * 28 6 5 47 47 H 1.07996 * 120.04173 * 180.26058 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2685 0.1957 1.1937 5 6 4.6454 0.1952 1.1899 6 6 5.3392 0.0003 0.0001 7 7 6.7348 0.0009 0.0001 8 6 7.5629 -0.0735 -1.2093 9 6 8.9708 -0.4798 -0.7204 10 6 8.9596 0.0363 0.7372 11 1 9.5029 -0.6467 1.3901 12 7 9.5384 1.3846 0.8096 13 6 10.9877 1.3483 0.5757 14 6 11.5773 2.7423 0.8017 15 6 10.9116 3.7341 -0.1562 16 6 11.4451 5.1195 0.1026 17 1 11.8452 5.3715 1.0735 18 6 11.4221 6.0655 -0.9002 19 7 10.8443 5.7918 -2.0494 20 14 12.2119 7.7361 -0.6264 21 1 11.2070 8.6720 -0.0609 22 1 13.3474 7.5976 0.3204 23 1 12.7090 8.2667 -1.9213 24 6 9.3981 3.7171 0.0747 25 6 8.8716 2.2948 -0.1302 26 6 7.4932 0.0692 1.1077 27 8 7.0644 0.1454 2.2397 28 6 4.6455 -0.1893 -1.1905 29 6 3.2685 -0.1954 -1.1936 30 1 2.7304 0.3469 2.1177 31 1 5.1873 0.3454 2.1119 32 1 7.1682 -0.8272 -1.8908 33 1 7.5990 0.8980 -1.7021 34 1 9.7452 0.0176 -1.3044 35 1 9.0968 -1.5621 -0.7500 36 1 11.1824 1.0333 -0.4495 37 1 11.4492 0.6424 1.2663 38 1 12.6506 2.7184 0.6129 39 1 11.3957 3.0524 1.8308 40 1 11.1272 3.4471 -1.1854 41 1 10.4984 4.9014 -2.2184 42 1 9.1815 4.0422 1.0923 43 1 8.9143 4.3897 -0.6336 44 1 9.0762 1.9755 -1.1521 45 1 7.7964 2.2766 0.0476 46 1 5.1876 -0.3359 -2.1131 47 1 2.7306 -0.3468 -2.1177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542878908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:03 Heat of formation + Delta-G solvation = 14.945150 kcal Electronic energy + Delta-G solvation = -29309.779342 eV Core-core repulsion = 25456.659641 eV Total energy + Delta-G solvation = -3853.119701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.65271 -40.41056 -39.40660 -37.87161 -37.38664 -35.96279 -33.99034 -32.24349 -32.09097 -31.69081 -30.13332 -28.67174 -26.62605 -25.21613 -24.51979 -23.89697 -23.46892 -22.22762 -20.97590 -20.41875 -19.97228 -18.90545 -18.77780 -18.09030 -16.97273 -16.27795 -16.13955 -15.76944 -15.74381 -15.63704 -15.55176 -15.40104 -15.06312 -14.88691 -14.75050 -14.52040 -14.40344 -14.20656 -13.92098 -13.84088 -13.75766 -13.50614 -13.16758 -13.15666 -13.01286 -12.65770 -12.54518 -12.47543 -12.22031 -12.07855 -11.98428 -11.94215 -11.37597 -11.23311 -11.01123 -10.82131 -10.54067 -10.25436 -10.10356 -9.29756 -9.03381 -8.55419 -6.24849 -0.35109 0.32524 1.20199 1.54098 1.60068 1.61112 1.62343 1.78874 1.97645 2.58857 2.83576 2.86862 2.90651 3.13201 3.23317 3.41068 3.76053 3.84088 3.90215 3.94803 4.04997 4.15835 4.17253 4.23371 4.35903 4.37184 4.46321 4.54020 4.57438 4.64800 4.69997 4.76231 4.89167 4.92023 4.94489 5.00119 5.01678 5.02529 5.09971 5.17500 5.29129 5.30568 5.36855 5.60161 5.72995 5.83455 5.88953 6.03322 6.10199 6.20137 6.31003 6.43519 6.74566 6.86219 7.52333 8.84983 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.002719 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.535898 B =10293.970473 C =11323.507266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.285 3.715 3 C -0.073 4.073 4 C -0.034 4.034 5 C -0.183 4.183 6 C 0.190 3.810 7 N -0.555 5.555 8 C 0.084 3.916 9 C -0.157 4.157 10 C 0.055 3.945 11 H 0.134 0.866 12 N -0.530 5.530 13 C 0.069 3.931 14 C -0.097 4.097 15 C 0.029 3.971 16 C -0.605 4.605 17 H 0.036 0.964 18 C -0.029 4.029 19 N -0.938 5.938 20 Si 1.108 2.892 21 H -0.281 1.281 22 H -0.274 1.274 23 H -0.283 1.283 24 C -0.096 4.096 25 C 0.069 3.931 26 C 0.524 3.476 27 O -0.530 6.530 28 C -0.153 4.153 29 C -0.026 4.026 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.127 0.873 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.042 0.958 40 H 0.008 0.992 41 H 0.261 0.739 42 H 0.031 0.969 43 H 0.029 0.971 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.167 0.833 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.980 -18.864 -1.542 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.029 4.029 3 C -0.077 4.077 4 C -0.055 4.055 5 C -0.203 4.203 6 C 0.094 3.906 7 N -0.277 5.277 8 C -0.036 4.036 9 C -0.196 4.196 10 C -0.056 4.056 11 H 0.152 0.848 12 N -0.256 5.256 13 C -0.058 4.058 14 C -0.135 4.135 15 C 0.010 3.990 16 C -0.643 4.643 17 H 0.055 0.945 18 C -0.227 4.227 19 N -0.576 5.576 20 Si 0.931 3.069 21 H -0.207 1.207 22 H -0.199 1.199 23 H -0.208 1.208 24 C -0.134 4.134 25 C -0.059 4.059 26 C 0.313 3.687 27 O -0.404 6.404 28 C -0.173 4.173 29 C -0.047 4.047 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.145 0.855 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.141 0.859 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.027 0.973 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.185 0.815 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.745 -17.167 -1.141 19.300 hybrid contribution 0.134 -1.137 0.270 1.177 sum -8.611 -18.304 -0.871 20.247 Atomic orbital electron populations 1.81277 1.13349 1.11322 1.08810 1.25815 0.92628 0.92062 0.92410 1.16040 0.83435 1.12257 0.96017 1.21108 0.92929 0.94026 0.97451 1.21490 0.94565 1.05225 0.99031 1.18298 0.81528 0.95399 0.95402 1.45950 1.04055 1.67949 1.09741 1.22724 0.90233 1.04523 0.86144 1.23314 0.96498 1.04888 0.94921 1.22558 0.91534 0.92333 0.99214 0.84804 1.61895 1.04783 1.06320 1.52556 1.22122 0.85597 0.97498 1.00560 1.21498 0.98776 0.94163 0.99063 1.18852 0.91618 0.94201 0.94320 1.22371 1.43518 0.99123 0.99262 0.94527 1.27014 0.95295 1.07357 0.93056 1.70885 1.37557 1.23031 1.26132 0.83037 0.76122 0.71810 0.75926 1.20708 1.19886 1.20811 1.21550 0.98758 0.94317 0.98802 1.22154 0.96902 0.92757 0.94082 1.21298 0.89981 0.73788 0.83663 1.90588 1.78553 1.48294 1.23013 1.20979 0.93975 1.05309 0.97065 1.21233 0.93229 0.93174 0.97060 0.83743 0.84087 0.85478 0.89944 0.88131 0.85868 0.93321 0.88715 0.92400 0.93953 0.97339 0.92831 0.95030 0.95210 0.93120 0.92506 0.81528 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.71 18.54 19.00 0.35 -11.35 16 2 C 0.28 5.62 15.33 88.33 1.35 6.97 16 3 C -0.07 -1.17 5.74 -21.29 -0.12 -1.29 16 4 C -0.03 -0.60 9.75 22.51 0.22 -0.38 16 5 C -0.18 -3.95 9.26 22.35 0.21 -3.75 16 6 C 0.19 3.56 6.60 38.33 0.25 3.82 16 7 N -0.56 -10.63 2.73 -627.62 -1.71 -12.34 16 8 C 0.08 1.06 5.52 86.83 0.48 1.54 16 9 C -0.16 -1.97 6.04 31.65 0.19 -1.78 16 10 C 0.06 1.15 3.15 44.91 0.14 1.29 16 11 H 0.13 2.39 8.07 -2.39 -0.02 2.37 16 12 N -0.53 -15.19 4.66 -871.15 -4.06 -19.25 16 13 C 0.07 1.91 5.19 86.33 0.45 2.36 16 14 C -0.10 -3.70 5.36 30.65 0.16 -3.53 16 15 C 0.03 1.35 1.80 -11.46 -0.02 1.33 16 16 C -0.60 -33.04 8.32 25.60 0.21 -32.82 16 17 H 0.04 2.03 7.81 -2.91 -0.02 2.01 16 18 C -0.03 -1.60 5.45 84.65 0.46 -1.14 16 19 N -0.94 -54.86 13.63 21.45 0.29 -54.56 16 20 Si 1.11 49.75 29.91 68.60 2.05 51.80 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 24 C -0.10 -4.18 5.29 30.64 0.16 -4.02 16 25 C 0.07 2.20 3.74 86.32 0.32 2.53 16 26 C 0.52 13.13 6.36 87.90 0.56 13.68 16 27 O -0.53 -17.16 14.79 -3.05 -0.05 -17.20 16 28 C -0.15 -1.87 9.39 22.35 0.21 -1.66 16 29 C -0.03 -0.31 9.75 22.52 0.22 -0.09 16 30 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 31 H 0.14 3.81 5.22 -2.91 -0.02 3.79 16 32 H 0.13 0.66 7.22 -2.39 -0.02 0.65 16 33 H 0.08 1.21 6.27 -2.39 -0.01 1.20 16 34 H 0.10 1.37 5.86 -2.39 -0.01 1.36 16 35 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 1.21 6.76 -2.39 -0.02 1.19 16 37 H 0.09 2.13 8.07 -2.39 -0.02 2.11 16 38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.01 0.42 6.91 -2.39 -0.02 0.41 16 41 H 0.26 15.09 6.38 -92.71 -0.59 14.50 16 42 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.03 1.43 7.81 -2.38 -0.02 1.41 16 44 H 0.05 1.46 5.73 -2.39 -0.01 1.45 16 45 H 0.06 1.82 6.35 -2.39 -0.02 1.81 16 46 H 0.17 1.02 6.72 -2.91 -0.02 1.00 16 47 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -72.93 371.46 3.53 -69.41 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 1.18 Total: 10.45 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 5.46 Total: -16.96 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -5.13 Total: -97.50 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.05 Total: -17.20 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.05 Total: 51.80 kcal Total: -72.93 3.53 -69.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542878908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.353 kcal (2) G-P(sol) polarization free energy of solvation -72.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds