Wall clock time and date at job start Sat Apr 11 2020 05:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.50696 * 115.54897 * 223.42385 * 3 2 1 5 5 C 1.38227 * 120.00179 * 34.42112 * 4 3 2 6 6 C 1.38235 * 120.00502 * 179.97438 * 5 4 3 7 7 C 1.38233 * 119.99795 * 0.02562 * 6 5 4 8 8 C 1.50706 * 120.00108 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.46981 * 90.00136 * 8 7 6 10 10 C 1.46904 * 110.99654 * 190.00110 * 9 8 7 11 11 C 1.53234 * 109.33586 * 187.25446 * 10 9 8 12 12 N 1.47084 * 108.52265 * 306.16629 * 11 10 9 13 13 C 1.34774 * 120.88423 * 231.18914 * 12 11 10 14 14 O 1.21683 * 120.00152 * 184.75727 * 13 12 11 15 15 C 1.46381 * 119.99639 * 4.48248 * 13 12 11 16 16 H 1.07995 * 119.99857 * 352.37174 * 15 13 12 17 17 C 1.40047 * 119.99552 * 172.37779 * 15 13 12 18 18 N 1.30671 * 120.00398 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99836 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47186 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47136 * 119.99942 * 19 17 15 22 22 H 1.48506 * 109.47056 * 239.99657 * 19 17 15 23 23 C 1.47076 * 118.23245 * 51.46383 * 12 11 10 24 24 C 1.46899 * 110.99818 * 314.30141 * 9 8 7 25 25 C 1.38240 * 119.99991 * 0.25383 * 7 6 5 26 26 C 1.38236 * 119.99746 * 359.47538 * 25 7 6 27 27 C 1.53001 * 117.50381 * 9.09968 * 3 2 1 28 28 C 1.53005 * 117.49937 * 77.75630 * 3 2 1 29 29 H 1.08000 * 119.99848 * 359.97438 * 5 4 3 30 30 H 1.08001 * 120.00334 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.46742 * 329.99659 * 8 7 6 32 32 H 1.09003 * 109.46673 * 210.00570 * 8 7 6 33 33 H 1.08998 * 109.49167 * 67.29568 * 10 9 8 34 34 H 1.08996 * 109.48967 * 307.21309 * 10 9 8 35 35 H 1.08999 * 109.62617 * 186.46285 * 11 10 9 36 36 H 1.08997 * 109.63436 * 65.88083 * 11 10 9 37 37 H 0.97002 * 120.00317 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.63463 * 68.25078 * 23 12 11 39 39 H 1.09007 * 109.62896 * 188.83227 * 23 12 11 40 40 H 1.09000 * 109.49186 * 292.70954 * 24 9 8 41 41 H 1.08993 * 109.49559 * 52.79167 * 24 9 8 42 42 H 1.08000 * 119.99630 * 179.72205 * 25 7 6 43 43 H 1.07995 * 119.99591 * 180.29525 * 26 25 7 44 44 H 1.09001 * 117.49840 * 215.00046 * 27 3 2 45 45 H 1.08996 * 117.49582 * 0.02562 * 27 3 2 46 46 H 1.09005 * 117.49597 * 359.97438 * 28 3 2 47 47 H 1.08998 * 117.49858 * 144.99120 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2575 0.9884 0.9346 5 6 2.6645 1.2852 2.1474 6 6 3.2605 2.1909 3.0050 7 6 4.4493 2.8002 2.6494 8 6 5.0988 3.7880 3.5841 9 7 6.0167 3.0787 4.4854 10 6 6.4874 3.9630 5.5599 11 6 7.5748 3.2461 6.3672 12 7 7.0452 1.9495 6.8161 13 6 7.1203 1.5823 8.1107 14 8 6.7563 0.4719 8.4503 15 6 7.6454 2.5170 9.1072 16 1 8.0859 3.4513 8.7919 17 6 7.5766 2.1997 10.4695 18 7 7.0433 1.0695 10.8511 19 14 8.2461 3.3929 11.7414 20 1 8.7931 4.5914 11.0561 21 1 7.1530 3.8027 12.6593 22 1 9.3248 2.7328 12.5199 23 6 6.4369 1.0617 5.8136 24 6 5.3889 1.8670 5.0291 25 6 5.0394 2.5077 1.4340 26 6 4.4462 1.5978 0.5789 27 6 3.3152 -1.3390 -0.2146 28 6 3.3146 -0.2868 -1.3263 29 1 1.7355 0.8095 2.4251 30 1 2.7970 2.4231 3.9524 31 1 4.3308 4.2922 4.1706 32 1 5.6554 4.5246 3.0045 33 1 5.6537 4.2143 6.2155 34 1 6.8977 4.8751 5.1266 35 1 7.8463 3.8502 7.2329 36 1 8.4514 3.0861 5.7394 37 1 6.9953 0.8498 11.7947 38 1 7.2061 0.6957 5.1337 39 1 5.9556 0.2208 6.3132 40 1 4.5705 2.1475 5.6921 41 1 5.0027 1.2591 4.2110 42 1 5.9658 2.9872 1.1543 43 1 4.9097 1.3658 -0.3686 44 1 4.2501 -1.5060 0.3202 45 1 2.6904 -2.2208 -0.3563 46 1 2.6894 -0.4769 -2.1988 47 1 4.2492 0.2385 -1.5229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895066377.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:36 Heat of formation + Delta-G solvation = 64.743186 kcal Electronic energy + Delta-G solvation = -28418.010198 eV Core-core repulsion = 24567.049902 eV Total energy + Delta-G solvation = -3850.960296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.49382 -39.05440 -37.93143 -36.45090 -35.90267 -33.67387 -32.53150 -31.34284 -31.08765 -30.51780 -27.71143 -26.31528 -25.16003 -23.74882 -23.33842 -23.02289 -22.31811 -21.11306 -20.59942 -18.77067 -18.26639 -16.75847 -16.64800 -15.84568 -15.51938 -15.44120 -15.00572 -14.91272 -14.46528 -14.30692 -14.22625 -14.00520 -13.89948 -13.81239 -13.65837 -13.58049 -13.13657 -12.83837 -12.54459 -12.46640 -12.18089 -12.06594 -11.74192 -11.57580 -11.43461 -11.23491 -11.17577 -11.02856 -10.95330 -10.87854 -10.75788 -10.68775 -10.43919 -10.21858 -9.95458 -9.09167 -8.88628 -8.77985 -8.14134 -7.58829 -7.18926 -6.21894 -4.65933 0.97889 1.21895 2.14952 2.34583 3.10872 3.19226 3.23053 3.26647 3.34167 3.60810 3.92873 4.05975 4.20510 4.31298 4.44338 4.55309 4.60591 4.63660 4.71081 4.76867 5.02741 5.08934 5.19835 5.27202 5.33448 5.37428 5.47677 5.51861 5.54261 5.56587 5.69852 5.75259 5.79501 5.85197 5.87898 5.91193 6.11148 6.18494 6.26685 6.27118 6.45377 6.47795 6.53807 6.71564 6.74312 7.16461 7.20235 7.27803 7.43924 7.61138 8.12546 8.35765 9.00689 9.43605 10.56184 10.74701 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021141 B = 0.002228 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.139759 B =12564.669645 C =13052.838497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.246 3.754 3 C -0.012 4.012 4 C -0.052 4.052 5 C -0.107 4.107 6 C -0.105 4.105 7 C -0.071 4.071 8 C 0.090 3.910 9 N -0.529 5.529 10 C 0.041 3.959 11 C 0.128 3.872 12 N -0.644 5.644 13 C 0.560 3.440 14 O -0.579 6.579 15 C -0.545 4.545 16 H 0.073 0.927 17 C 0.087 3.913 18 N -0.769 5.769 19 Si 0.906 3.094 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.276 1.276 23 C 0.127 3.873 24 C 0.041 3.959 25 C -0.094 4.094 26 C -0.111 4.111 27 C -0.136 4.136 28 C -0.144 4.144 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.268 0.732 38 H 0.048 0.952 39 H 0.084 0.916 40 H 0.032 0.968 41 H 0.079 0.921 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.119 0.881 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.749 3.198 -22.968 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.072 4.072 3 C -0.015 4.015 4 C -0.054 4.054 5 C -0.125 4.125 6 C -0.124 4.124 7 C -0.071 4.071 8 C -0.038 4.038 9 N -0.254 5.254 10 C -0.087 4.087 11 C 0.003 3.997 12 N -0.383 5.383 13 C 0.366 3.634 14 O -0.461 6.461 15 C -0.581 4.581 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.398 5.398 19 Si 0.731 3.269 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.201 1.201 23 C 0.002 3.998 24 C -0.088 4.088 25 C -0.112 4.112 26 C -0.128 4.128 27 C -0.174 4.174 28 C -0.182 4.182 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.050 0.950 41 H 0.097 0.903 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.137 0.863 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.341 2.314 -22.848 23.578 hybrid contribution -0.143 0.971 1.147 1.509 sum -5.484 3.284 -21.701 22.623 Atomic orbital electron populations 1.81281 1.11987 1.08388 1.08317 1.27569 0.93156 0.93192 0.93273 1.16855 0.81828 1.01077 1.01754 1.18535 0.95723 0.97215 0.93893 1.20867 0.99985 0.98229 0.93465 1.21095 0.95396 0.96538 0.99369 1.19862 0.94496 0.97674 0.95087 1.21127 0.94459 0.94316 0.93856 1.62149 1.37453 1.06816 1.18980 1.22588 0.98782 0.95341 0.92013 1.21490 0.94037 0.86358 0.97820 1.48260 1.64346 1.17568 1.08139 1.18262 0.78355 0.87497 0.79295 1.90587 1.54100 1.22768 1.78682 1.20992 1.42111 1.04759 0.90266 0.90884 1.25730 0.93322 0.94959 0.99209 1.70017 1.32999 1.20430 1.16353 0.86345 0.79034 0.80962 0.80608 1.18714 1.20221 1.20122 1.21286 0.94547 0.93672 0.90252 1.22736 0.96409 0.91933 0.97702 1.20993 0.99416 0.97487 0.93316 1.20927 0.94992 0.96960 0.99958 1.23331 1.02323 0.90812 1.00912 1.23332 1.02286 1.01735 0.90889 0.86420 0.85917 0.94129 0.89884 0.94479 0.90720 0.88617 0.93271 0.92140 0.93389 0.89805 0.94952 0.90286 0.85330 0.85410 0.86261 0.87446 0.87470 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.31 18.54 42.15 0.78 -4.52 16 2 C 0.25 2.44 14.09 -20.76 -0.29 2.15 16 3 C -0.01 -0.08 2.43 -158.45 -0.39 -0.47 16 4 C -0.05 -0.45 5.43 -104.63 -0.57 -1.02 16 5 C -0.11 -1.10 9.32 -39.59 -0.37 -1.47 16 6 C -0.11 -1.14 7.76 -39.58 -0.31 -1.45 16 7 C -0.07 -0.75 4.13 -104.62 -0.43 -1.18 16 8 C 0.09 1.01 5.43 -4.97 -0.03 0.98 16 9 N -0.53 -7.51 4.77 -235.46 -1.12 -8.64 16 10 C 0.04 0.62 5.58 -3.70 -0.02 0.60 16 11 C 0.13 2.34 6.51 -3.60 -0.02 2.32 16 12 N -0.64 -14.66 3.00 -173.84 -0.52 -15.19 16 13 C 0.56 15.89 7.62 -12.99 -0.10 15.79 16 14 O -0.58 -18.74 14.54 5.20 0.08 -18.66 16 15 C -0.54 -15.07 8.86 -35.63 -0.32 -15.39 16 16 H 0.07 1.83 5.71 -52.49 -0.30 1.53 16 17 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 18 N -0.77 -22.93 11.86 55.55 0.66 -22.27 16 19 Si 0.91 19.83 29.56 -169.99 -5.02 14.81 16 20 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 C 0.13 2.52 6.61 -3.36 -0.02 2.50 16 24 C 0.04 0.65 4.79 -3.46 -0.02 0.64 16 25 C -0.09 -0.84 9.70 -39.58 -0.38 -1.23 16 26 C -0.11 -0.85 9.39 -39.58 -0.37 -1.22 16 27 C -0.14 -0.68 9.91 -26.70 -0.26 -0.94 16 28 C -0.14 -0.62 9.55 -26.69 -0.25 -0.87 16 29 H 0.12 1.20 7.47 -52.49 -0.39 0.80 16 30 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.04 0.47 8.02 -51.93 -0.42 0.05 16 32 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.92 8.11 -51.93 -0.42 0.49 16 35 H 0.10 1.82 5.38 -51.93 -0.28 1.54 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.86 7.09 -51.93 -0.37 1.49 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 1.15 5.54 -51.93 -0.29 0.86 16 42 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.13 0.64 5.93 -52.49 -0.31 0.32 16 44 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.12 0.33 6.08 -51.93 -0.32 0.01 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -35.54 385.01 -10.05 -45.59 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.45 Total: 1.03 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -4.25 Total: 2.05 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.21 Total: -50.62 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.08 Total: -18.66 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.54 -10.05 -45.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895066377.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.330 kcal (2) G-P(sol) polarization free energy of solvation -35.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds