Wall clock time and date at job start Sat Apr 11 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.50696 * 115.54897 * 223.42385 * 3 2 1 5 5 C 1.38227 * 120.00179 * 34.42112 * 4 3 2 6 6 C 1.38235 * 120.00502 * 179.97438 * 5 4 3 7 7 C 1.38233 * 119.99795 * 0.02562 * 6 5 4 8 8 C 1.50706 * 120.00108 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.46981 * 90.00136 * 8 7 6 10 10 C 1.46904 * 110.99654 * 190.00110 * 9 8 7 11 11 C 1.53234 * 109.33586 * 187.25446 * 10 9 8 12 12 N 1.47084 * 108.52265 * 306.16629 * 11 10 9 13 13 C 1.34774 * 120.88423 * 231.18914 * 12 11 10 14 14 O 1.21683 * 120.00152 * 184.75727 * 13 12 11 15 15 C 1.46381 * 119.99639 * 4.48248 * 13 12 11 16 16 H 1.07995 * 119.99857 * 352.37174 * 15 13 12 17 17 C 1.40047 * 119.99552 * 172.37779 * 15 13 12 18 18 N 1.30671 * 120.00398 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99836 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47186 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47136 * 119.99942 * 19 17 15 22 22 H 1.48506 * 109.47056 * 239.99657 * 19 17 15 23 23 C 1.47076 * 118.23245 * 51.46383 * 12 11 10 24 24 C 1.46899 * 110.99818 * 314.30141 * 9 8 7 25 25 C 1.38240 * 119.99991 * 0.25383 * 7 6 5 26 26 C 1.38236 * 119.99746 * 359.47538 * 25 7 6 27 27 C 1.53001 * 117.50381 * 9.09968 * 3 2 1 28 28 C 1.53005 * 117.49937 * 77.75630 * 3 2 1 29 29 H 1.08000 * 119.99848 * 359.97438 * 5 4 3 30 30 H 1.08001 * 120.00334 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.46742 * 329.99659 * 8 7 6 32 32 H 1.09003 * 109.46673 * 210.00570 * 8 7 6 33 33 H 1.08998 * 109.49167 * 67.29568 * 10 9 8 34 34 H 1.08996 * 109.48967 * 307.21309 * 10 9 8 35 35 H 1.08999 * 109.62617 * 186.46285 * 11 10 9 36 36 H 1.08997 * 109.63436 * 65.88083 * 11 10 9 37 37 H 0.97002 * 120.00317 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.63463 * 68.25078 * 23 12 11 39 39 H 1.09007 * 109.62896 * 188.83227 * 23 12 11 40 40 H 1.09000 * 109.49186 * 292.70954 * 24 9 8 41 41 H 1.08993 * 109.49559 * 52.79167 * 24 9 8 42 42 H 1.08000 * 119.99630 * 179.72205 * 25 7 6 43 43 H 1.07995 * 119.99591 * 180.29525 * 26 25 7 44 44 H 1.09001 * 117.49840 * 215.00046 * 27 3 2 45 45 H 1.08996 * 117.49582 * 0.02562 * 27 3 2 46 46 H 1.09005 * 117.49597 * 359.97438 * 28 3 2 47 47 H 1.08998 * 117.49858 * 144.99120 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2575 0.9884 0.9346 5 6 2.6645 1.2852 2.1474 6 6 3.2605 2.1909 3.0050 7 6 4.4493 2.8002 2.6494 8 6 5.0988 3.7880 3.5841 9 7 6.0167 3.0787 4.4854 10 6 6.4874 3.9630 5.5599 11 6 7.5748 3.2461 6.3672 12 7 7.0452 1.9495 6.8161 13 6 7.1203 1.5823 8.1107 14 8 6.7563 0.4719 8.4503 15 6 7.6454 2.5170 9.1072 16 1 8.0859 3.4513 8.7919 17 6 7.5766 2.1997 10.4695 18 7 7.0433 1.0695 10.8511 19 14 8.2461 3.3929 11.7414 20 1 8.7931 4.5914 11.0561 21 1 7.1530 3.8027 12.6593 22 1 9.3248 2.7328 12.5199 23 6 6.4369 1.0617 5.8136 24 6 5.3889 1.8670 5.0291 25 6 5.0394 2.5077 1.4340 26 6 4.4462 1.5978 0.5789 27 6 3.3152 -1.3390 -0.2146 28 6 3.3146 -0.2868 -1.3263 29 1 1.7355 0.8095 2.4251 30 1 2.7970 2.4231 3.9524 31 1 4.3308 4.2922 4.1706 32 1 5.6554 4.5246 3.0045 33 1 5.6537 4.2143 6.2155 34 1 6.8977 4.8751 5.1266 35 1 7.8463 3.8502 7.2329 36 1 8.4514 3.0861 5.7394 37 1 6.9953 0.8498 11.7947 38 1 7.2061 0.6957 5.1337 39 1 5.9556 0.2208 6.3132 40 1 4.5705 2.1475 5.6921 41 1 5.0027 1.2591 4.2110 42 1 5.9658 2.9872 1.1543 43 1 4.9097 1.3658 -0.3686 44 1 4.2501 -1.5060 0.3202 45 1 2.6904 -2.2208 -0.3563 46 1 2.6894 -0.4769 -2.1988 47 1 4.2492 0.2385 -1.5229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895066377.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:35 Heat of formation + Delta-G solvation = 41.916460 kcal Electronic energy + Delta-G solvation = -28419.000039 eV Core-core repulsion = 24567.049902 eV Total energy + Delta-G solvation = -3851.950137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.22791 -40.33886 -39.04499 -37.93955 -36.72180 -35.22318 -34.62073 -32.25644 -32.18837 -31.69934 -29.06702 -28.07742 -26.15268 -24.70037 -24.57818 -23.72292 -23.03199 -22.35652 -21.75713 -20.46662 -18.89279 -18.53083 -17.83985 -17.26925 -16.51668 -16.34183 -16.30746 -16.01102 -15.86302 -15.57511 -15.52467 -15.26959 -14.99876 -14.80198 -14.59037 -14.39553 -14.35871 -13.86852 -13.66250 -13.57523 -13.41883 -13.21932 -13.06072 -12.83810 -12.70573 -12.64293 -12.42763 -12.19718 -12.15103 -11.99572 -11.93590 -11.85961 -11.69332 -11.51689 -11.34432 -10.95510 -9.82841 -9.77008 -9.59554 -9.30556 -8.98535 -8.29687 -6.83460 0.27011 0.50135 1.39709 1.40397 1.47165 1.58107 1.58963 2.23474 2.45568 2.55519 2.72938 2.83168 3.02134 3.19301 3.40573 3.60145 3.73200 3.88834 3.96867 4.00581 4.03237 4.10865 4.14873 4.31566 4.40881 4.43383 4.48458 4.55114 4.67221 4.69695 4.73615 4.77775 4.83475 4.84544 4.92659 4.96511 5.03610 5.07162 5.15671 5.21972 5.24780 5.39208 5.47529 5.57978 5.71627 5.74890 6.00820 6.03997 6.10460 6.15740 6.41869 6.42661 6.88121 7.43721 8.46706 8.67436 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021141 B = 0.002228 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.139759 B =12564.669645 C =13052.838497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C 0.266 3.734 3 C -0.039 4.039 4 C -0.047 4.047 5 C -0.127 4.127 6 C -0.121 4.121 7 C -0.087 4.087 8 C 0.093 3.907 9 N -0.525 5.525 10 C 0.049 3.951 11 C 0.123 3.877 12 N -0.648 5.648 13 C 0.540 3.460 14 O -0.636 6.636 15 C -0.567 4.567 16 H 0.097 0.903 17 C 0.027 3.973 18 N -0.826 5.826 19 Si 0.996 3.004 20 H -0.241 1.241 21 H -0.271 1.271 22 H -0.270 1.270 23 C 0.125 3.875 24 C 0.061 3.939 25 C -0.091 4.091 26 C -0.102 4.102 27 C -0.129 4.129 28 C -0.119 4.119 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.035 0.965 32 H 0.111 0.889 33 H 0.019 0.981 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.273 0.727 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.009 0.991 41 H 0.097 0.903 42 H 0.150 0.850 43 H 0.165 0.835 44 H 0.128 0.872 45 H 0.111 0.889 46 H 0.117 0.883 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.472 5.427 -25.742 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.158 5.158 2 C -0.050 4.050 3 C -0.043 4.043 4 C -0.048 4.048 5 C -0.145 4.145 6 C -0.140 4.140 7 C -0.087 4.087 8 C -0.034 4.034 9 N -0.249 5.249 10 C -0.079 4.079 11 C -0.001 4.001 12 N -0.385 5.385 13 C 0.346 3.654 14 O -0.523 6.523 15 C -0.603 4.603 16 H 0.114 0.886 17 C -0.188 4.188 18 N -0.456 5.456 19 Si 0.815 3.185 20 H -0.164 1.164 21 H -0.196 1.196 22 H -0.195 1.195 23 C 0.001 3.999 24 C -0.068 4.068 25 C -0.110 4.110 26 C -0.120 4.120 27 C -0.167 4.167 28 C -0.156 4.156 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.053 0.947 32 H 0.129 0.871 33 H 0.037 0.963 34 H 0.134 0.866 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.027 0.973 41 H 0.115 0.885 42 H 0.168 0.832 43 H 0.182 0.818 44 H 0.146 0.854 45 H 0.129 0.871 46 H 0.135 0.865 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.062 4.588 -25.698 26.283 hybrid contribution -0.861 0.218 1.873 2.072 sum -3.923 4.806 -23.825 24.620 Atomic orbital electron populations 1.81286 1.13754 1.10353 1.10377 1.28134 0.93773 0.91550 0.91587 1.17059 0.80133 1.02759 1.04314 1.18695 0.95995 0.97023 0.93131 1.20898 1.00097 0.98843 0.94657 1.21065 0.96215 0.97486 0.99220 1.19855 0.94574 0.98252 0.96059 1.21199 0.94138 0.94635 0.93379 1.62146 1.38096 1.06256 1.18424 1.22512 0.97186 0.96324 0.91886 1.21712 0.95782 0.84302 0.98261 1.48163 1.63770 1.19460 1.07114 1.18719 0.78174 0.87062 0.81415 1.90532 1.56474 1.24920 1.80403 1.21520 1.42311 1.05534 0.90939 0.88558 1.27029 0.92978 0.96931 1.01859 1.70201 1.34797 1.23317 1.17290 0.84993 0.78238 0.78393 0.76832 1.16387 1.19574 1.19538 1.21371 0.95582 0.93112 0.89821 1.22448 0.94198 0.92949 0.97220 1.21282 0.99872 0.97320 0.92480 1.21288 0.94124 0.95586 1.00957 1.23471 1.02087 0.90036 1.01079 1.23563 1.02426 0.99997 0.89639 0.87673 0.87395 0.94677 0.87128 0.96292 0.86598 0.89449 0.91512 0.91696 0.91997 0.93352 0.97304 0.88497 0.83229 0.81760 0.85355 0.87068 0.86493 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -12.40 18.54 20.00 0.37 -12.03 16 2 C 0.27 5.21 14.09 89.44 1.26 6.47 16 3 C -0.04 -0.48 2.43 -54.73 -0.13 -0.61 16 4 C -0.05 -0.72 5.43 -19.87 -0.11 -0.83 16 5 C -0.13 -2.61 9.32 22.27 0.21 -2.40 16 6 C -0.12 -2.65 7.76 22.27 0.17 -2.48 16 7 C -0.09 -1.68 4.13 -19.86 -0.08 -1.76 16 8 C 0.09 1.87 5.43 85.56 0.46 2.33 16 9 N -0.52 -13.87 4.77 -898.87 -4.29 -18.16 16 10 C 0.05 1.39 5.58 86.38 0.48 1.87 16 11 C 0.12 4.36 6.51 86.35 0.56 4.93 16 12 N -0.65 -30.22 3.00 -822.14 -2.47 -32.69 16 13 C 0.54 31.99 7.62 86.36 0.66 32.65 16 14 O -0.64 -43.74 14.54 -4.29 -0.06 -43.81 16 15 C -0.57 -31.96 8.86 24.83 0.22 -31.74 16 16 H 0.10 4.79 5.71 -2.91 -0.02 4.77 16 17 C 0.03 1.48 5.50 85.30 0.47 1.95 16 18 N -0.83 -51.24 11.86 21.84 0.26 -50.98 16 19 Si 1.00 40.74 29.56 68.60 2.03 42.76 16 20 H -0.24 -8.90 7.11 99.48 0.71 -8.20 16 21 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 23 C 0.13 5.13 6.61 86.51 0.57 5.71 16 24 C 0.06 1.97 4.79 86.54 0.41 2.38 16 25 C -0.09 -1.31 9.70 22.27 0.22 -1.09 16 26 C -0.10 -1.17 9.39 22.27 0.21 -0.97 16 27 C -0.13 -0.92 9.91 30.62 0.30 -0.61 16 28 C -0.12 -0.54 9.55 30.62 0.29 -0.25 16 29 H 0.11 2.33 7.47 -2.91 -0.02 2.31 16 30 H 0.11 2.56 8.06 -2.91 -0.02 2.54 16 31 H 0.03 0.76 8.02 -2.39 -0.02 0.74 16 32 H 0.11 1.67 8.08 -2.39 -0.02 1.65 16 33 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.12 2.36 8.11 -2.39 -0.02 2.34 16 35 H 0.09 3.23 5.38 -2.39 -0.01 3.22 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.27 15.32 8.29 -92.71 -0.77 14.56 16 38 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.05 2.31 7.09 -2.38 -0.02 2.29 16 40 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.10 2.80 5.54 -2.39 -0.01 2.79 16 42 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 43 H 0.17 0.65 5.93 -2.91 -0.02 0.64 16 44 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.12 0.38 8.14 -2.38 -0.02 0.36 16 47 H 0.14 -0.04 6.08 -2.39 -0.01 -0.06 16 Total: -1.00 -84.17 385.01 3.02 -81.16 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 1.00 Total: 18.20 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 6.18 Total: 15.55 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -6.13 Total: -113.86 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -0.06 Total: -43.81 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.76 kcal Total: -84.17 3.02 -81.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895066377.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.073 kcal (2) G-P(sol) polarization free energy of solvation -84.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds