Wall clock time and date at job start Sat Apr 11 2020 05:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99827 * 2 1 4 4 H 1.48500 * 109.47124 * 269.99204 * 3 2 1 5 5 H 1.48495 * 109.47393 * 29.99604 * 3 2 1 6 6 H 1.48505 * 109.47110 * 149.99901 * 3 2 1 7 7 C 1.37879 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99924 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00052 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47117 * 179.97438 * 9 7 2 11 11 C 1.35044 * 125.92785 * 124.99658 * 10 9 7 12 12 C 1.35078 * 107.97805 * 179.73935 * 11 10 9 13 13 C 1.50699 * 126.07696 * 180.02562 * 12 11 10 14 14 N 1.46902 * 109.47284 * 259.97159 * 13 12 11 15 15 C 1.48569 * 110.99736 * 54.57683 * 14 13 12 16 16 C 1.54379 * 104.59077 * 159.04198 * 15 14 13 17 17 H 1.09002 * 118.15538 * 115.85435 * 16 15 14 18 18 C 1.52996 * 118.13118 * 272.77024 * 16 15 14 19 19 C 1.52995 * 60.54612 * 91.67001 * 18 16 15 20 20 O 1.42899 * 120.23199 * 111.45445 * 19 18 16 21 21 C 1.48551 * 111.00336 * 169.99580 * 14 13 12 22 22 C 1.40845 * 107.85227 * 359.97438 * 12 11 10 23 23 C 1.48420 * 126.04293 * 180.02562 * 22 12 11 24 24 C 1.39325 * 120.11524 * 324.72627 * 23 22 12 25 25 C 1.38020 * 119.87822 * 179.76811 * 24 23 22 26 26 C 1.38322 * 120.11670 * 0.48842 * 25 24 23 27 27 C 1.38315 * 120.24424 * 359.78762 * 26 25 24 28 28 C 1.38027 * 120.11733 * 359.95301 * 27 26 25 29 29 N 1.31621 * 107.92323 * 0.02562 * 22 12 11 30 30 H 0.97003 * 120.00005 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46871 * 59.99695 * 9 7 2 32 32 H 1.09002 * 109.46404 * 299.99826 * 9 7 2 33 33 H 1.08001 * 126.01083 * 359.70383 * 11 10 9 34 34 H 1.09007 * 109.47069 * 19.97000 * 13 12 11 35 35 H 1.09000 * 109.47332 * 139.97177 * 13 12 11 36 36 H 1.08998 * 110.40935 * 277.82073 * 15 14 13 37 37 H 1.08994 * 110.40963 * 40.26611 * 15 14 13 38 38 H 1.09007 * 117.43810 * 344.02449 * 18 16 15 39 39 H 1.08996 * 117.44714 * 199.32318 * 18 16 15 40 40 H 0.96703 * 114.00119 * 111.70186 * 20 19 18 41 41 H 1.08998 * 110.41610 * 319.74108 * 21 14 13 42 42 H 1.09005 * 110.40896 * 82.18100 * 21 14 13 43 43 H 1.08002 * 120.06531 * 359.97438 * 24 23 22 44 44 H 1.07998 * 119.94324 * 180.23292 * 25 24 23 45 45 H 1.08001 * 119.87447 * 179.76636 * 26 25 24 46 46 H 1.08005 * 119.94269 * 179.97438 * 27 26 25 47 47 H 1.07994 * 120.05772 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1941 0.0011 10 7 3.9999 -2.5753 0.0022 11 6 4.8556 -3.1139 -0.8929 12 6 5.0633 -4.4032 -0.5476 13 6 5.9508 -5.3836 -1.2702 14 7 5.1286 -6.2511 -2.1243 15 6 4.2834 -5.4463 -3.0437 16 6 3.9198 -6.4171 -4.1877 17 1 2.8715 -6.6839 -4.3222 18 6 4.8851 -6.5337 -5.3689 19 6 5.0348 -7.4830 -4.1785 20 8 4.7469 -8.8748 -4.3274 21 6 5.9783 -7.0667 -3.0296 22 6 4.3038 -4.6682 0.6086 23 6 4.2355 -5.9631 1.3308 24 6 4.2889 -7.1620 0.6230 25 6 4.2298 -8.3633 1.2999 26 6 4.1076 -8.3783 2.6776 27 6 4.0483 -7.1911 3.3848 28 6 4.1119 -5.9841 2.7183 29 7 3.6652 -3.5647 0.9355 30 1 -0.4850 0.8401 -0.0004 31 1 3.8745 -0.6800 0.8911 32 1 3.8751 -0.6805 -0.8889 33 1 5.2961 -2.6038 -1.7368 34 1 6.6665 -4.8397 -1.8867 35 1 6.4870 -5.9929 -0.5427 36 1 3.3825 -5.1068 -2.5325 37 1 4.8453 -4.5964 -3.4306 38 1 5.6346 -5.7507 -5.4843 39 1 4.4947 -6.9500 -6.2975 40 1 5.5244 -9.4463 -4.2636 41 1 6.8055 -6.4703 -3.4144 42 1 6.3537 -7.9471 -2.5079 43 1 4.3798 -7.1514 -0.4532 44 1 4.2750 -9.2932 0.7526 45 1 4.0579 -9.3206 3.2031 46 1 3.9525 -7.2085 4.4604 47 1 4.0652 -5.0577 3.2713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895651288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:40 Heat of formation + Delta-G solvation = 110.173104 kcal Electronic energy + Delta-G solvation = -29270.235834 eV Core-core repulsion = 25421.245527 eV Total energy + Delta-G solvation = -3848.990307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.90657 -40.00192 -38.50247 -36.21837 -34.31392 -33.55740 -32.29255 -30.73708 -30.50985 -29.90736 -28.15576 -27.81476 -25.93629 -23.50446 -22.77105 -22.21995 -21.45719 -21.15233 -20.35779 -19.91350 -19.01432 -17.32586 -17.08312 -16.61344 -15.96285 -15.78444 -15.41839 -14.87069 -14.66988 -14.43974 -14.24566 -13.98062 -13.93628 -13.63288 -13.20956 -13.13577 -12.96380 -12.92567 -12.69531 -12.49469 -12.37822 -12.08352 -11.95822 -11.71950 -11.31084 -11.24476 -11.01161 -10.92034 -10.76448 -10.73306 -10.39043 -10.30956 -9.93181 -9.69259 -9.53363 -9.08872 -8.80325 -8.61383 -8.49142 -8.15310 -7.63872 -6.26844 -4.29918 1.44288 1.74139 2.55598 3.10565 3.17340 3.18056 3.19074 3.33130 3.37852 3.64765 4.02747 4.18773 4.22124 4.29421 4.58786 4.80893 4.91360 5.01398 5.07427 5.10559 5.21641 5.26470 5.28582 5.32733 5.37933 5.43291 5.50254 5.51199 5.56877 5.69795 5.77724 5.80804 5.93271 5.99575 6.02578 6.13319 6.23486 6.34359 6.40111 6.46560 6.61859 6.68064 6.74927 6.82067 6.94587 7.02350 7.13632 7.28709 7.35323 7.39567 7.68133 8.27460 8.43572 8.83125 9.27319 10.85737 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008785 B = 0.003914 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.601998 B = 7151.509247 C = 9446.393543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.078 3.922 3 Si 0.872 3.128 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.230 3.770 10 N -0.319 5.319 11 C 0.055 3.945 12 C -0.247 4.247 13 C 0.130 3.870 14 N -0.498 5.498 15 C 0.068 3.932 16 C -0.145 4.145 17 H 0.121 0.879 18 C -0.160 4.160 19 C 0.037 3.963 20 O -0.518 6.518 21 C 0.046 3.954 22 C 0.098 3.902 23 C 0.000 4.000 24 C -0.104 4.104 25 C -0.129 4.129 26 C -0.125 4.125 27 C -0.130 4.130 28 C -0.097 4.097 29 N -0.257 5.257 30 H 0.269 0.731 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.163 0.837 34 H 0.040 0.960 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.380 0.620 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.163 0.837 44 H 0.118 0.882 45 H 0.114 0.886 46 H 0.118 0.882 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.536 -15.168 -5.677 22.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.126 4.126 3 Si 0.698 3.302 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.104 0.896 9 C 0.111 3.889 10 N -0.098 5.098 11 C -0.095 4.095 12 C -0.260 4.260 13 C 0.002 3.998 14 N -0.223 5.223 15 C -0.059 4.059 16 C -0.164 4.164 17 H 0.139 0.861 18 C -0.198 4.198 19 C -0.005 4.005 20 O -0.323 6.323 21 C -0.082 4.082 22 C -0.066 4.066 23 C -0.002 4.002 24 C -0.123 4.123 25 C -0.147 4.147 26 C -0.143 4.143 27 C -0.148 4.148 28 C -0.116 4.116 29 N -0.081 5.081 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.180 0.820 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.228 0.772 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.180 0.820 44 H 0.136 0.864 45 H 0.133 0.867 46 H 0.136 0.864 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.563 -14.357 -4.530 20.263 hybrid contribution 1.692 1.023 -1.050 2.238 sum 15.255 -13.335 -5.579 21.015 Atomic orbital electron populations 1.69871 1.06142 1.27331 1.48827 1.24819 0.94845 0.98721 0.94220 0.86929 0.80440 0.83971 0.78879 1.19733 1.20450 1.18938 1.21071 0.87577 0.95782 1.52943 0.89567 1.20067 0.97636 0.73010 0.98162 1.48931 1.31354 1.10996 1.18548 1.22176 0.96298 0.94421 0.96648 1.19483 1.10536 0.94453 1.01486 1.20393 0.92391 0.92243 0.94804 1.65536 1.18501 1.20939 1.17294 1.22606 0.98946 0.93516 0.90879 1.23838 0.97166 0.97847 0.97506 0.86130 1.23677 1.01632 1.00804 0.93706 1.22465 1.00450 0.80793 0.96826 1.86465 1.36434 1.14405 1.95008 1.23044 0.94035 0.99137 0.91957 1.20482 0.97754 0.92872 0.95481 1.17868 1.00447 0.89813 0.92084 1.22079 0.96728 0.90593 1.02918 1.21048 1.01668 0.97835 0.94157 1.21145 1.00868 0.97705 0.94601 1.20989 1.01852 0.92390 0.99587 1.21278 0.98418 0.98170 0.93747 1.77739 1.20747 0.95885 1.13685 0.92117 0.93953 0.93567 0.81991 0.94220 0.89909 0.88738 0.93138 0.88649 0.87697 0.77206 0.92776 0.89234 0.81995 0.86422 0.86745 0.86425 0.85953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.39 13.96 55.43 0.77 -25.61 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.87 19.87 27.47 -169.99 -4.67 15.20 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 7 C -0.54 -14.91 9.79 -34.44 -0.34 -15.25 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 9 C 0.23 5.30 5.33 -5.19 -0.03 5.27 16 10 N -0.32 -6.86 3.67 -62.58 -0.23 -7.09 16 11 C 0.05 0.94 11.04 -17.26 -0.19 0.75 16 12 C -0.25 -4.02 4.48 -104.76 -0.47 -4.49 16 13 C 0.13 1.60 4.48 -4.98 -0.02 1.58 16 14 N -0.50 -5.96 3.03 -231.41 -0.70 -6.66 16 15 C 0.07 0.87 5.15 -2.18 -0.01 0.86 16 16 C -0.14 -1.70 7.13 -89.24 -0.64 -2.34 16 17 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 18 C -0.16 -1.51 10.07 -26.74 -0.27 -1.78 16 19 C 0.04 0.38 3.92 -89.24 -0.35 0.03 16 20 O -0.52 -5.33 13.97 -35.23 -0.49 -5.82 16 21 C 0.05 0.43 6.24 -2.19 -0.01 0.42 16 22 C 0.10 1.86 6.74 -82.78 -0.56 1.31 16 23 C 0.00 0.00 5.80 -104.90 -0.61 -0.61 16 24 C -0.10 -1.56 8.78 -39.26 -0.34 -1.90 16 25 C -0.13 -1.67 10.03 -39.63 -0.40 -2.07 16 26 C -0.12 -1.55 10.04 -39.52 -0.40 -1.95 16 27 C -0.13 -1.76 10.03 -39.63 -0.40 -2.16 16 28 C -0.10 -1.56 9.75 -39.26 -0.38 -1.95 16 29 N -0.26 -5.80 12.41 33.43 0.41 -5.39 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 31 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 32 H 0.05 0.96 7.50 -51.93 -0.39 0.57 16 33 H 0.16 2.22 8.06 -52.49 -0.42 1.80 16 34 H 0.04 0.43 7.87 -51.93 -0.41 0.02 16 35 H 0.08 1.00 7.78 -51.93 -0.40 0.59 16 36 H 0.09 1.50 7.92 -51.93 -0.41 1.09 16 37 H 0.05 0.61 8.00 -51.93 -0.42 0.19 16 38 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.38 2.08 9.11 45.56 0.42 2.50 16 41 H 0.05 0.44 7.82 -51.93 -0.41 0.03 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.16 2.39 4.73 -52.49 -0.25 2.14 16 44 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 46 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 47 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -32.80 386.66 -10.62 -43.42 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.04 Total: 8.32 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -5.51 Total: -22.20 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.26 Total: -44.75 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.49 Total: -5.82 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.67 Total: 15.20 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.80 -10.62 -43.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895651288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.598 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds