Wall clock time and date at job start Sat Apr 11 2020 05:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99827 * 2 1 4 4 H 1.48500 * 109.47124 * 269.99204 * 3 2 1 5 5 H 1.48495 * 109.47393 * 29.99604 * 3 2 1 6 6 H 1.48505 * 109.47110 * 149.99901 * 3 2 1 7 7 C 1.37879 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99924 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00052 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47117 * 179.97438 * 9 7 2 11 11 C 1.35044 * 125.92785 * 124.99658 * 10 9 7 12 12 C 1.35078 * 107.97805 * 179.73935 * 11 10 9 13 13 C 1.50699 * 126.07696 * 180.02562 * 12 11 10 14 14 N 1.46902 * 109.47284 * 259.97159 * 13 12 11 15 15 C 1.48569 * 110.99736 * 54.57683 * 14 13 12 16 16 C 1.54379 * 104.59077 * 159.04198 * 15 14 13 17 17 H 1.09002 * 118.15538 * 115.85435 * 16 15 14 18 18 C 1.52996 * 118.13118 * 272.77024 * 16 15 14 19 19 C 1.52995 * 60.54612 * 91.67001 * 18 16 15 20 20 O 1.42899 * 120.23199 * 111.45445 * 19 18 16 21 21 C 1.48551 * 111.00336 * 169.99580 * 14 13 12 22 22 C 1.40845 * 107.85227 * 359.97438 * 12 11 10 23 23 C 1.48420 * 126.04293 * 180.02562 * 22 12 11 24 24 C 1.39325 * 120.11524 * 324.72627 * 23 22 12 25 25 C 1.38020 * 119.87822 * 179.76811 * 24 23 22 26 26 C 1.38322 * 120.11670 * 0.48842 * 25 24 23 27 27 C 1.38315 * 120.24424 * 359.78762 * 26 25 24 28 28 C 1.38027 * 120.11733 * 359.95301 * 27 26 25 29 29 N 1.31621 * 107.92323 * 0.02562 * 22 12 11 30 30 H 0.97003 * 120.00005 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46871 * 59.99695 * 9 7 2 32 32 H 1.09002 * 109.46404 * 299.99826 * 9 7 2 33 33 H 1.08001 * 126.01083 * 359.70383 * 11 10 9 34 34 H 1.09007 * 109.47069 * 19.97000 * 13 12 11 35 35 H 1.09000 * 109.47332 * 139.97177 * 13 12 11 36 36 H 1.08998 * 110.40935 * 277.82073 * 15 14 13 37 37 H 1.08994 * 110.40963 * 40.26611 * 15 14 13 38 38 H 1.09007 * 117.43810 * 344.02449 * 18 16 15 39 39 H 1.08996 * 117.44714 * 199.32318 * 18 16 15 40 40 H 0.96703 * 114.00119 * 111.70186 * 20 19 18 41 41 H 1.08998 * 110.41610 * 319.74108 * 21 14 13 42 42 H 1.09005 * 110.40896 * 82.18100 * 21 14 13 43 43 H 1.08002 * 120.06531 * 359.97438 * 24 23 22 44 44 H 1.07998 * 119.94324 * 180.23292 * 25 24 23 45 45 H 1.08001 * 119.87447 * 179.76636 * 26 25 24 46 46 H 1.08005 * 119.94269 * 179.97438 * 27 26 25 47 47 H 1.07994 * 120.05772 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1941 0.0011 10 7 3.9999 -2.5753 0.0022 11 6 4.8556 -3.1139 -0.8929 12 6 5.0633 -4.4032 -0.5476 13 6 5.9508 -5.3836 -1.2702 14 7 5.1286 -6.2511 -2.1243 15 6 4.2834 -5.4463 -3.0437 16 6 3.9198 -6.4171 -4.1877 17 1 2.8715 -6.6839 -4.3222 18 6 4.8851 -6.5337 -5.3689 19 6 5.0348 -7.4830 -4.1785 20 8 4.7469 -8.8748 -4.3274 21 6 5.9783 -7.0667 -3.0296 22 6 4.3038 -4.6682 0.6086 23 6 4.2355 -5.9631 1.3308 24 6 4.2889 -7.1620 0.6230 25 6 4.2298 -8.3633 1.2999 26 6 4.1076 -8.3783 2.6776 27 6 4.0483 -7.1911 3.3848 28 6 4.1119 -5.9841 2.7183 29 7 3.6652 -3.5647 0.9355 30 1 -0.4850 0.8401 -0.0004 31 1 3.8745 -0.6800 0.8911 32 1 3.8751 -0.6805 -0.8889 33 1 5.2961 -2.6038 -1.7368 34 1 6.6665 -4.8397 -1.8867 35 1 6.4870 -5.9929 -0.5427 36 1 3.3825 -5.1068 -2.5325 37 1 4.8453 -4.5964 -3.4306 38 1 5.6346 -5.7507 -5.4843 39 1 4.4947 -6.9500 -6.2975 40 1 5.5244 -9.4463 -4.2636 41 1 6.8055 -6.4703 -3.4144 42 1 6.3537 -7.9471 -2.5079 43 1 4.3798 -7.1514 -0.4532 44 1 4.2750 -9.2932 0.7526 45 1 4.0579 -9.3206 3.2031 46 1 3.9525 -7.2085 4.4604 47 1 4.0652 -5.0577 3.2713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895651288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:39 Heat of formation + Delta-G solvation = 87.793697 kcal Electronic energy + Delta-G solvation = -29271.206278 eV Core-core repulsion = 25421.245527 eV Total energy + Delta-G solvation = -3849.960751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.23296 -40.93259 -39.64919 -37.09996 -35.76211 -34.87141 -33.94652 -32.03316 -31.74135 -31.19632 -29.39169 -29.01035 -27.16141 -25.10064 -23.80241 -23.38932 -22.81861 -21.99121 -21.32423 -21.21197 -20.33849 -19.11846 -18.16694 -17.86894 -17.23747 -16.84534 -16.48199 -16.22780 -15.97080 -15.72409 -15.46049 -15.15228 -14.97770 -14.66201 -14.56396 -14.33015 -14.25163 -14.07270 -13.99557 -13.74879 -13.59340 -13.37738 -13.07214 -12.91968 -12.62283 -12.45400 -12.21491 -12.12818 -12.07962 -11.94421 -11.87682 -11.79075 -11.31397 -11.14510 -10.90984 -10.53709 -10.33984 -9.73869 -9.55285 -9.32977 -8.99674 -8.41336 -6.52322 0.25537 0.61500 1.16410 1.31364 1.35069 1.44775 1.82753 1.91694 2.24799 2.56080 2.88061 2.90876 3.05379 3.20071 3.43619 3.64445 3.76421 3.83580 4.06710 4.14205 4.15882 4.22469 4.25528 4.34323 4.43019 4.45163 4.51609 4.59844 4.65502 4.68852 4.74890 4.77747 4.79315 4.83604 4.97689 5.01159 5.03295 5.10753 5.18059 5.21375 5.22732 5.37229 5.54600 5.70938 5.79547 5.82513 5.89752 5.94890 6.06467 6.22188 6.38415 6.53712 6.88469 6.96798 7.10836 8.76134 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008785 B = 0.003914 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.601998 B = 7151.509247 C = 9446.393543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.957 3.043 4 H -0.250 1.250 5 H -0.280 1.280 6 H -0.241 1.241 7 C -0.547 4.547 8 H 0.021 0.979 9 C 0.240 3.760 10 N -0.348 5.348 11 C 0.054 3.946 12 C -0.238 4.238 13 C 0.137 3.863 14 N -0.511 5.511 15 C 0.076 3.924 16 C -0.178 4.178 17 H 0.099 0.901 18 C -0.140 4.140 19 C 0.047 3.953 20 O -0.537 6.537 21 C 0.051 3.949 22 C 0.095 3.905 23 C -0.031 4.031 24 C -0.109 4.109 25 C -0.125 4.125 26 C -0.115 4.115 27 C -0.131 4.131 28 C -0.120 4.120 29 N -0.326 5.326 30 H 0.273 0.727 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.201 0.799 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.401 0.599 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.164 0.836 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.141 0.859 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.430 -16.501 -6.944 26.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.174 1.174 5 H -0.206 1.206 6 H -0.164 1.164 7 C -0.585 4.585 8 H 0.039 0.961 9 C 0.120 3.880 10 N -0.127 5.127 11 C -0.094 4.094 12 C -0.250 4.250 13 C 0.009 3.991 14 N -0.236 5.236 15 C -0.051 4.051 16 C -0.198 4.198 17 H 0.117 0.883 18 C -0.178 4.178 19 C 0.005 3.995 20 O -0.346 6.346 21 C -0.076 4.076 22 C -0.069 4.069 23 C -0.033 4.033 24 C -0.128 4.128 25 C -0.143 4.143 26 C -0.133 4.133 27 C -0.148 4.148 28 C -0.139 4.139 29 N -0.149 5.149 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.218 0.782 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.253 0.747 41 H 0.096 0.904 42 H 0.126 0.874 43 H 0.181 0.819 44 H 0.166 0.834 45 H 0.170 0.830 46 H 0.159 0.841 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 17.499 -15.742 -5.809 24.244 hybrid contribution 0.395 1.154 -0.623 1.369 sum 17.894 -14.588 -6.432 23.966 Atomic orbital electron populations 1.70062 1.08652 1.28847 1.50519 1.25948 0.95764 1.03594 0.93119 0.85596 0.79387 0.77081 0.80171 1.17435 1.20553 1.16425 1.21192 0.90519 0.93573 1.53229 0.96065 1.19818 0.94098 0.74812 0.99304 1.48746 1.33388 1.10542 1.20070 1.22873 0.95042 0.94936 0.96529 1.19940 1.09769 0.94916 1.00421 1.20411 0.91776 0.91800 0.95095 1.65428 1.19305 1.20855 1.17978 1.22364 0.97460 0.94342 0.90977 1.23731 0.96969 0.99693 0.99369 0.88310 1.23725 1.00410 1.00613 0.93005 1.22533 0.98865 0.80725 0.97377 1.86416 1.38415 1.14731 1.95011 1.23122 0.93729 0.99565 0.91187 1.21075 0.96817 0.92749 0.96272 1.18060 1.02821 0.89792 0.92626 1.22167 0.96947 0.90618 1.03057 1.21423 1.00116 0.98060 0.94712 1.21579 0.98551 0.98610 0.94558 1.21285 1.00888 0.91784 1.00894 1.21300 1.00129 0.98737 0.93761 1.77641 1.23520 0.97665 1.16067 0.91839 0.94066 0.90282 0.78205 0.91474 0.89175 0.93409 0.92079 0.86755 0.87188 0.74715 0.90448 0.87419 0.81909 0.83371 0.83023 0.84123 0.88020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.25 13.96 21.45 0.30 -58.95 16 2 C 0.01 0.84 5.47 84.66 0.46 1.30 16 3 Si 0.96 41.30 27.47 68.60 1.88 43.19 16 4 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.24 -9.42 6.54 99.48 0.65 -8.77 16 7 C -0.55 -32.39 9.79 25.60 0.25 -32.14 16 8 H 0.02 1.48 8.06 -2.91 -0.02 1.46 16 9 C 0.24 11.29 5.33 85.64 0.46 11.74 16 10 N -0.35 -15.62 3.67 -351.91 -1.29 -16.91 16 11 C 0.05 1.87 11.04 83.47 0.92 2.79 16 12 C -0.24 -7.79 4.48 -19.95 -0.09 -7.88 16 13 C 0.14 3.10 4.48 85.56 0.38 3.48 16 14 N -0.51 -11.38 3.03 -886.04 -2.69 -14.07 16 15 C 0.08 1.95 5.15 86.45 0.44 2.39 16 16 C -0.18 -4.15 7.13 -9.90 -0.07 -4.22 16 17 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 18 C -0.14 -2.29 10.07 30.59 0.31 -1.99 16 19 C 0.05 0.84 3.92 -9.90 -0.04 0.81 16 20 O -0.54 -9.72 13.97 -148.98 -2.08 -11.81 16 21 C 0.05 0.77 6.24 86.45 0.54 1.31 16 22 C 0.09 3.81 6.74 42.53 0.29 4.10 16 23 C -0.03 -1.10 5.80 -20.04 -0.12 -1.22 16 24 C -0.11 -3.20 8.78 22.48 0.20 -3.00 16 25 C -0.13 -2.93 10.03 22.24 0.22 -2.71 16 26 C -0.11 -2.52 10.04 22.31 0.22 -2.30 16 27 C -0.13 -3.41 10.03 22.24 0.22 -3.18 16 28 C -0.12 -4.05 9.75 22.48 0.22 -3.83 16 29 N -0.33 -15.86 12.41 -48.16 -0.60 -16.45 16 30 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 31 H 0.04 1.93 7.20 -2.39 -0.02 1.91 16 32 H 0.08 3.18 7.50 -2.39 -0.02 3.16 16 33 H 0.20 5.03 8.06 -2.91 -0.02 5.01 16 34 H 0.07 1.17 7.87 -2.38 -0.02 1.15 16 35 H 0.09 1.95 7.78 -2.39 -0.02 1.93 16 36 H 0.05 1.64 7.92 -2.39 -0.02 1.62 16 37 H 0.06 1.38 8.00 -2.39 -0.02 1.36 16 38 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.40 3.09 9.11 -74.06 -0.67 2.42 16 41 H 0.08 0.86 7.82 -2.39 -0.02 0.84 16 42 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.16 4.70 4.73 -2.91 -0.01 4.69 16 44 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 45 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 46 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 47 H 0.10 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -80.59 386.66 0.61 -79.98 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.26 Total: 29.56 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 4.83 Total: -34.54 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -4.27 Total: -106.38 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -2.08 Total: -11.81 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 1.88 Total: 43.19 kcal Total: -80.59 0.61 -79.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895651288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.774 kcal (2) G-P(sol) polarization free energy of solvation -80.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds