Wall clock time and date at job start Sat Apr 11 2020 05:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00038 * 2 1 4 4 H 1.48499 * 109.47219 * 239.99992 * 3 2 1 5 5 H 1.48500 * 109.47327 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46817 * 119.99920 * 3 2 1 7 7 C 1.38817 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99523 * 163.46515 * 7 2 1 9 9 N 1.36929 * 120.00267 * 343.46017 * 7 2 1 10 10 C 1.46927 * 120.63206 * 151.51067 * 9 7 2 11 11 C 1.53193 * 108.89565 * 126.46723 * 10 9 7 12 12 C 1.53037 * 109.30987 * 54.56357 * 11 10 9 13 13 N 1.46503 * 109.45469 * 178.61442 * 12 11 10 14 14 C 1.34776 * 119.99668 * 204.99914 * 13 12 11 15 15 O 1.21588 * 120.00401 * 0.02562 * 14 13 12 16 16 C 1.47580 * 119.99900 * 179.97438 * 14 13 12 17 17 C 1.39658 * 120.19466 * 6.28967 * 16 14 13 18 18 C 1.37823 * 119.92012 * 179.74268 * 17 16 14 19 19 C 1.38533 * 120.30839 * 0.52669 * 18 17 16 20 20 C 1.38067 * 120.39185 * 359.72404 * 19 18 17 21 21 C 1.38759 * 120.07645 * 0.02562 * 20 19 18 22 22 N 1.39664 * 120.15540 * 179.97438 * 21 20 19 23 23 C 1.36654 * 125.68636 * 57.38882 * 22 21 20 24 24 C 1.34809 * 108.19687 * 179.83242 * 23 22 21 25 25 C 1.40995 * 107.48315 * 0.42867 * 24 23 22 26 26 C 1.34814 * 107.48497 * 359.73500 * 25 24 23 27 27 C 1.53037 * 109.54004 * 298.63374 * 12 11 10 28 28 C 1.46963 * 120.65543 * 331.33391 * 9 7 2 29 29 H 0.97000 * 120.00068 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.58258 * 6.60685 * 10 9 7 31 31 H 1.09001 * 109.58892 * 246.32774 * 10 9 7 32 32 H 1.09004 * 109.49606 * 174.51744 * 11 10 9 33 33 H 1.08998 * 109.49319 * 294.61082 * 11 10 9 34 34 H 1.09003 * 109.45961 * 58.65836 * 12 11 10 35 35 H 0.96996 * 120.00421 * 25.00126 * 13 12 11 36 36 H 1.08009 * 120.03524 * 359.97438 * 17 16 14 37 37 H 1.08001 * 119.84504 * 180.25616 * 18 17 16 38 38 H 1.08004 * 119.80323 * 179.74351 * 19 18 17 39 39 H 1.08001 * 119.96233 * 179.97438 * 20 19 18 40 40 H 1.08001 * 125.90053 * 0.02562 * 23 22 21 41 41 H 1.07996 * 126.25621 * 180.15973 * 24 23 22 42 42 H 1.07993 * 126.25514 * 179.71164 * 25 24 23 43 43 H 1.08003 * 125.89866 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.49741 * 181.31380 * 27 12 11 45 45 H 1.08998 * 109.49867 * 301.38557 * 27 12 11 46 46 H 1.08999 * 109.46967 * 113.74477 * 28 9 7 47 47 H 1.08997 * 109.71340 * 353.45829 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0567 -1.2217 -0.2657 9 7 1.3680 -2.3634 0.3386 10 6 1.8106 -3.6515 -0.2125 11 6 2.0610 -4.6257 0.9429 12 6 0.8048 -4.7127 1.8127 13 7 1.0293 -5.6687 2.8999 14 6 -0.0175 -6.2926 3.4755 15 8 -1.1482 -6.0624 3.0922 16 6 0.2086 -7.2561 4.5703 17 6 1.4887 -7.4276 5.1017 18 6 1.6925 -8.3251 6.1277 19 6 0.6349 -9.0670 6.6279 20 6 -0.6348 -8.9115 6.1086 21 6 -0.8593 -8.0087 5.0790 22 7 -2.1430 -7.8504 4.5520 23 6 -3.2577 -7.4994 5.2602 24 6 -4.2993 -7.4453 4.4061 25 6 -3.8154 -7.7838 3.1258 26 6 -2.4945 -8.0268 3.2433 27 6 0.4935 -3.3349 2.4016 28 6 0.2253 -2.3460 1.2626 29 1 -0.4850 0.8400 0.0004 30 1 2.7321 -3.5099 -0.7773 31 1 1.0381 -4.0532 -0.8683 32 1 2.2955 -5.6121 0.5427 33 1 2.8965 -4.2688 1.5451 34 1 -0.0359 -5.0460 1.2042 35 1 1.9313 -5.8527 3.2054 36 1 2.3172 -6.8548 4.7117 37 1 2.6821 -8.4537 6.5406 38 1 0.8047 -9.7710 7.4292 39 1 -1.4542 -9.4937 6.5035 40 1 -3.2968 -7.2970 6.3203 41 1 -5.3190 -7.1933 4.6574 42 1 -4.3966 -7.8389 2.2173 43 1 -1.8293 -8.3119 2.4416 44 1 -0.3877 -3.4025 3.0395 45 1 1.3435 -2.9904 2.9905 46 1 -0.6782 -2.6400 0.7286 47 1 0.0983 -1.3437 1.6714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932215883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:04 Heat of formation + Delta-G solvation = 81.821848 kcal Electronic energy + Delta-G solvation = -29324.693580 eV Core-core repulsion = 25474.473870 eV Total energy + Delta-G solvation = -3850.219710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.63793 -39.83912 -38.65142 -37.22343 -34.54379 -33.19714 -32.50236 -31.45709 -30.01929 -29.45689 -28.89672 -28.62080 -25.31121 -24.03788 -23.20404 -22.27113 -21.96767 -20.53061 -20.13542 -20.00708 -19.39903 -18.47818 -17.51696 -16.75892 -16.25177 -15.54448 -15.33096 -15.04113 -14.80662 -14.72662 -14.14591 -13.87849 -13.65206 -13.59915 -13.50462 -13.37739 -12.98900 -12.87617 -12.46862 -12.42677 -12.32887 -12.17093 -11.89103 -11.79753 -11.50583 -11.13025 -10.94509 -10.72682 -10.41496 -10.27051 -10.09081 -9.89644 -9.77157 -9.62429 -9.51157 -9.45853 -8.75201 -8.43793 -8.32577 -7.84981 -6.68293 -5.78472 -3.22466 0.38971 0.74253 2.40545 2.76660 2.95405 3.20233 3.30121 3.38329 3.44230 3.44974 3.50727 4.33211 4.41907 4.49092 4.55204 4.85891 4.87989 4.90917 5.23490 5.30875 5.35273 5.40611 5.42658 5.44086 5.60570 5.61420 5.72573 5.79678 5.83070 5.86554 5.92842 6.05552 6.20916 6.28567 6.31060 6.40793 6.43826 6.44368 6.58173 6.63494 6.76242 6.88262 6.92228 7.13639 7.34411 7.36840 7.58948 7.62382 7.68898 7.78971 8.31837 8.45089 9.20685 9.83787 10.40933 11.30111 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015836 B = 0.002809 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.656753 B = 9964.009231 C =10925.612900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.257 4.257 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.149 3.851 11 C -0.139 4.139 12 C 0.153 3.847 13 N -0.718 5.718 14 C 0.542 3.458 15 O -0.508 6.508 16 C -0.132 4.132 17 C -0.074 4.074 18 C -0.125 4.125 19 C -0.084 4.084 20 C -0.127 4.127 21 C 0.178 3.822 22 N -0.405 5.405 23 C -0.020 4.020 24 C -0.186 4.186 25 C -0.207 4.207 26 C 0.054 3.946 27 C -0.145 4.145 28 C 0.175 3.825 29 H 0.255 0.745 30 H 0.058 0.942 31 H 0.020 0.980 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.392 0.608 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.155 0.845 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.150 0.850 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.021 0.979 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.663 -20.853 13.803 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.387 4.387 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.022 3.978 11 C -0.179 4.179 12 C 0.050 3.950 13 N -0.369 5.369 14 C 0.328 3.672 15 O -0.383 6.383 16 C -0.136 4.136 17 C -0.094 4.094 18 C -0.143 4.143 19 C -0.103 4.103 20 C -0.146 4.146 21 C 0.085 3.915 22 N -0.080 5.080 23 C -0.146 4.146 24 C -0.211 4.211 25 C -0.231 4.231 26 C -0.073 4.073 27 C -0.186 4.186 28 C 0.049 3.951 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.226 0.774 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.173 0.827 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.167 0.833 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.039 0.961 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.991 -20.523 13.578 24.628 hybrid contribution 0.955 0.931 0.242 1.355 sum 1.946 -19.592 13.820 24.055 Atomic orbital electron populations 1.70021 1.05272 1.25712 1.53406 1.25082 0.95283 0.98460 1.00678 0.86368 0.78903 0.83370 0.78083 1.20858 1.21606 1.21052 1.19119 0.92366 0.84749 1.42452 0.91730 1.44080 1.35988 1.01618 1.49799 1.20825 0.98028 0.86719 0.92239 1.22345 0.96630 0.99764 0.99146 1.21068 0.98838 0.88349 0.86731 1.46276 1.08711 1.44063 1.37805 1.18102 0.85637 0.81140 0.82343 1.90908 1.21538 1.63330 1.62570 1.20228 0.93981 0.99009 1.00401 1.21311 0.95271 0.97205 0.95563 1.21200 0.99748 0.96545 0.96820 1.21230 0.91832 0.98362 0.98858 1.21176 0.98376 0.97802 0.97269 1.17666 0.83666 0.95022 0.95110 1.41161 1.04416 1.54047 1.08331 1.21695 0.85190 1.09977 0.97703 1.20829 0.98257 1.08593 0.93413 1.20769 0.94223 1.10106 0.97959 1.21490 0.95896 1.05298 0.84630 1.22554 1.00431 0.95125 1.00471 1.20737 0.88731 0.97857 0.87798 0.93487 0.92341 0.96192 0.92630 0.91896 0.89861 0.77366 0.84739 0.84767 0.84746 0.84662 0.82724 0.84854 0.84873 0.83258 0.92866 0.92778 0.96093 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 11.21 55.49 0.62 -25.85 16 2 C 0.00 0.11 4.93 -17.43 -0.09 0.03 16 3 Si 0.90 21.70 29.58 -169.99 -5.03 16.67 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.26 -7.04 9.58 -15.06 -0.14 -7.18 16 8 H 0.06 1.72 7.88 -52.48 -0.41 1.30 16 9 N -0.59 -14.81 3.00 -172.29 -0.52 -15.33 16 10 C 0.15 3.05 6.51 -3.71 -0.02 3.03 16 11 C -0.14 -2.27 5.55 -26.61 -0.15 -2.42 16 12 C 0.15 2.65 2.42 -67.89 -0.16 2.48 16 13 N -0.72 -10.03 5.03 -54.79 -0.28 -10.31 16 14 C 0.54 8.24 7.55 -12.45 -0.09 8.15 16 15 O -0.51 -9.58 12.27 5.29 0.06 -9.51 16 16 C -0.13 -1.60 5.87 -104.82 -0.62 -2.21 16 17 C -0.07 -0.65 9.52 -39.20 -0.37 -1.02 16 18 C -0.12 -0.84 10.02 -39.62 -0.40 -1.24 16 19 C -0.08 -0.56 10.03 -39.54 -0.40 -0.96 16 20 C -0.13 -1.12 9.77 -39.45 -0.39 -1.51 16 21 C 0.18 2.15 5.85 -83.36 -0.49 1.66 16 22 N -0.40 -5.62 2.10 -60.69 -0.13 -5.75 16 23 C -0.02 -0.27 11.23 -16.62 -0.19 -0.46 16 24 C -0.19 -2.56 10.86 -39.75 -0.43 -2.99 16 25 C -0.21 -3.04 10.86 -39.75 -0.43 -3.47 16 26 C 0.05 0.80 8.00 -16.62 -0.13 0.67 16 27 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 28 C 0.18 4.30 5.29 -3.69 -0.02 4.29 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 35 H 0.39 4.26 6.67 -40.82 -0.27 3.98 16 36 H 0.13 0.90 6.45 -52.48 -0.34 0.57 16 37 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 39 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.15 2.14 7.96 -52.48 -0.42 1.72 16 44 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.09 2.43 6.10 -51.93 -0.32 2.11 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -33.38 380.09 -10.98 -44.36 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.77 Total: 6.22 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -4.67 Total: -6.24 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.30 Total: -57.24 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.06 Total: -9.51 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.38 -10.98 -44.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932215883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.179 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds