Wall clock time and date at job start Sat Apr 11 2020 05:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00038 * 2 1 4 4 H 1.48499 * 109.47219 * 239.99992 * 3 2 1 5 5 H 1.48500 * 109.47327 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46817 * 119.99920 * 3 2 1 7 7 C 1.38817 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99523 * 163.46515 * 7 2 1 9 9 N 1.36929 * 120.00267 * 343.46017 * 7 2 1 10 10 C 1.46927 * 120.63206 * 151.51067 * 9 7 2 11 11 C 1.53193 * 108.89565 * 126.46723 * 10 9 7 12 12 C 1.53037 * 109.30987 * 54.56357 * 11 10 9 13 13 N 1.46503 * 109.45469 * 178.61442 * 12 11 10 14 14 C 1.34776 * 119.99668 * 204.99914 * 13 12 11 15 15 O 1.21588 * 120.00401 * 0.02562 * 14 13 12 16 16 C 1.47580 * 119.99900 * 179.97438 * 14 13 12 17 17 C 1.39658 * 120.19466 * 6.28967 * 16 14 13 18 18 C 1.37823 * 119.92012 * 179.74268 * 17 16 14 19 19 C 1.38533 * 120.30839 * 0.52669 * 18 17 16 20 20 C 1.38067 * 120.39185 * 359.72404 * 19 18 17 21 21 C 1.38759 * 120.07645 * 0.02562 * 20 19 18 22 22 N 1.39664 * 120.15540 * 179.97438 * 21 20 19 23 23 C 1.36654 * 125.68636 * 57.38882 * 22 21 20 24 24 C 1.34809 * 108.19687 * 179.83242 * 23 22 21 25 25 C 1.40995 * 107.48315 * 0.42867 * 24 23 22 26 26 C 1.34814 * 107.48497 * 359.73500 * 25 24 23 27 27 C 1.53037 * 109.54004 * 298.63374 * 12 11 10 28 28 C 1.46963 * 120.65543 * 331.33391 * 9 7 2 29 29 H 0.97000 * 120.00068 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.58258 * 6.60685 * 10 9 7 31 31 H 1.09001 * 109.58892 * 246.32774 * 10 9 7 32 32 H 1.09004 * 109.49606 * 174.51744 * 11 10 9 33 33 H 1.08998 * 109.49319 * 294.61082 * 11 10 9 34 34 H 1.09003 * 109.45961 * 58.65836 * 12 11 10 35 35 H 0.96996 * 120.00421 * 25.00126 * 13 12 11 36 36 H 1.08009 * 120.03524 * 359.97438 * 17 16 14 37 37 H 1.08001 * 119.84504 * 180.25616 * 18 17 16 38 38 H 1.08004 * 119.80323 * 179.74351 * 19 18 17 39 39 H 1.08001 * 119.96233 * 179.97438 * 20 19 18 40 40 H 1.08001 * 125.90053 * 0.02562 * 23 22 21 41 41 H 1.07996 * 126.25621 * 180.15973 * 24 23 22 42 42 H 1.07993 * 126.25514 * 179.71164 * 25 24 23 43 43 H 1.08003 * 125.89866 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.49741 * 181.31380 * 27 12 11 45 45 H 1.08998 * 109.49867 * 301.38557 * 27 12 11 46 46 H 1.08999 * 109.46967 * 113.74477 * 28 9 7 47 47 H 1.08997 * 109.71340 * 353.45829 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0567 -1.2217 -0.2657 9 7 1.3680 -2.3634 0.3386 10 6 1.8106 -3.6515 -0.2125 11 6 2.0610 -4.6257 0.9429 12 6 0.8048 -4.7127 1.8127 13 7 1.0293 -5.6687 2.8999 14 6 -0.0175 -6.2926 3.4755 15 8 -1.1482 -6.0624 3.0922 16 6 0.2086 -7.2561 4.5703 17 6 1.4887 -7.4276 5.1017 18 6 1.6925 -8.3251 6.1277 19 6 0.6349 -9.0670 6.6279 20 6 -0.6348 -8.9115 6.1086 21 6 -0.8593 -8.0087 5.0790 22 7 -2.1430 -7.8504 4.5520 23 6 -3.2577 -7.4994 5.2602 24 6 -4.2993 -7.4453 4.4061 25 6 -3.8154 -7.7838 3.1258 26 6 -2.4945 -8.0268 3.2433 27 6 0.4935 -3.3349 2.4016 28 6 0.2253 -2.3460 1.2626 29 1 -0.4850 0.8400 0.0004 30 1 2.7321 -3.5099 -0.7773 31 1 1.0381 -4.0532 -0.8683 32 1 2.2955 -5.6121 0.5427 33 1 2.8965 -4.2688 1.5451 34 1 -0.0359 -5.0460 1.2042 35 1 1.9313 -5.8527 3.2054 36 1 2.3172 -6.8548 4.7117 37 1 2.6821 -8.4537 6.5406 38 1 0.8047 -9.7710 7.4292 39 1 -1.4542 -9.4937 6.5035 40 1 -3.2968 -7.2970 6.3203 41 1 -5.3190 -7.1933 4.6574 42 1 -4.3966 -7.8389 2.2173 43 1 -1.8293 -8.3119 2.4416 44 1 -0.3877 -3.4025 3.0395 45 1 1.3435 -2.9904 2.9905 46 1 -0.6782 -2.6400 0.7286 47 1 0.0983 -1.3437 1.6714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932215883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:03 Heat of formation + Delta-G solvation = 63.101351 kcal Electronic energy + Delta-G solvation = -29325.505361 eV Core-core repulsion = 25474.473870 eV Total energy + Delta-G solvation = -3851.031491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.59445 -40.98381 -39.61906 -38.72949 -36.09603 -34.22969 -33.90736 -32.63811 -31.69844 -30.98575 -29.80058 -29.66433 -27.06334 -25.15854 -24.01920 -23.95135 -23.46153 -21.71917 -21.26916 -21.10207 -20.75481 -19.51632 -18.82882 -18.30893 -17.40643 -16.83045 -16.29721 -16.25206 -16.05329 -15.85541 -15.53494 -15.38966 -15.09736 -14.87730 -14.57120 -14.47961 -14.37435 -14.26821 -14.10072 -13.46082 -13.22750 -13.18927 -13.05779 -13.01677 -12.91778 -12.66321 -12.58048 -12.41247 -12.15878 -12.09931 -11.89125 -11.57827 -11.43859 -10.93453 -10.59762 -10.37164 -10.23744 -9.97685 -9.27394 -8.92661 -8.73469 -7.89185 -5.36730 -0.37916 0.10293 1.43191 1.46445 1.49285 1.56189 1.81741 2.00844 2.10526 2.21077 2.50283 2.69250 3.26772 3.54911 3.65508 3.68313 3.84785 4.00066 4.02366 4.03589 4.25019 4.28076 4.30599 4.30833 4.42628 4.53612 4.62038 4.63976 4.73402 4.76013 4.82621 4.85991 4.99547 5.02489 5.08104 5.12117 5.22006 5.27548 5.34516 5.36956 5.40734 5.41944 5.48874 5.61380 5.65692 5.72235 6.08177 6.30113 6.36297 6.51981 6.64241 7.10882 7.20869 7.81566 8.35100 9.17931 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015836 B = 0.002809 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.656753 B = 9964.009231 C =10925.612900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.054 4.054 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.265 4.265 8 H 0.075 0.925 9 N -0.609 5.609 10 C 0.142 3.858 11 C -0.121 4.121 12 C 0.166 3.834 13 N -0.704 5.704 14 C 0.538 3.462 15 O -0.554 6.554 16 C -0.157 4.157 17 C -0.071 4.071 18 C -0.113 4.113 19 C -0.068 4.068 20 C -0.128 4.128 21 C 0.145 3.855 22 N -0.405 5.405 23 C -0.024 4.024 24 C -0.207 4.207 25 C -0.230 4.230 26 C 0.038 3.962 27 C -0.128 4.128 28 C 0.186 3.814 29 H 0.249 0.751 30 H 0.069 0.931 31 H 0.009 0.991 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.412 0.588 36 H 0.155 0.845 37 H 0.173 0.827 38 H 0.173 0.827 39 H 0.147 0.853 40 H 0.180 0.820 41 H 0.149 0.851 42 H 0.136 0.864 43 H 0.144 0.856 44 H 0.039 0.961 45 H 0.062 0.938 46 H -0.014 1.014 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.259 -22.901 16.379 28.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.249 4.249 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.395 4.395 8 H 0.093 0.907 9 N -0.332 5.332 10 C 0.016 3.984 11 C -0.160 4.160 12 C 0.062 3.938 13 N -0.356 5.356 14 C 0.326 3.674 15 O -0.433 6.433 16 C -0.161 4.161 17 C -0.090 4.090 18 C -0.131 4.131 19 C -0.086 4.086 20 C -0.147 4.147 21 C 0.053 3.947 22 N -0.079 5.079 23 C -0.150 4.150 24 C -0.231 4.231 25 C -0.254 4.254 26 C -0.090 4.090 27 C -0.168 4.168 28 C 0.059 3.941 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.027 0.973 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.250 0.750 36 H 0.173 0.827 37 H 0.190 0.810 38 H 0.190 0.810 39 H 0.164 0.836 40 H 0.197 0.803 41 H 0.166 0.834 42 H 0.154 0.846 43 H 0.162 0.838 44 H 0.057 0.943 45 H 0.081 0.919 46 H 0.004 0.996 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.663 -22.622 16.174 28.197 hybrid contribution -0.121 1.468 -0.521 1.563 sum 4.542 -21.153 15.652 26.704 Atomic orbital electron populations 1.70209 1.07003 1.25977 1.55311 1.25926 0.95994 1.01938 1.01091 0.85287 0.77463 0.78827 0.78546 1.19724 1.22432 1.20113 1.19547 0.92936 0.85712 1.41259 0.90724 1.44322 1.35700 1.02850 1.50356 1.21035 0.97903 0.85597 0.93889 1.22138 0.96072 1.00406 0.97392 1.20627 0.98645 0.87161 0.87385 1.45923 1.09745 1.43049 1.36846 1.18692 0.84940 0.81139 0.82615 1.90894 1.23405 1.64877 1.64121 1.20055 0.95825 0.99668 1.00554 1.21599 0.94104 0.97597 0.95743 1.21672 1.01463 0.94703 0.95259 1.21723 0.90522 0.97834 0.98558 1.21394 1.00044 0.97026 0.96225 1.18076 0.82828 0.96937 0.96857 1.41288 1.05450 1.53312 1.07831 1.22155 0.85017 1.08990 0.98793 1.21115 0.99438 1.09356 0.93195 1.21016 0.94694 1.10912 0.98776 1.21496 0.95918 1.06057 0.85511 1.22273 1.00042 0.96002 0.98475 1.20412 0.87843 0.97065 0.88776 0.94185 0.91220 0.97275 0.88966 0.90368 0.92673 0.75037 0.82718 0.80989 0.80972 0.83570 0.80274 0.83353 0.84642 0.83849 0.94268 0.91944 0.99621 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.63 11.21 21.65 0.24 -57.39 16 2 C -0.05 -3.08 4.93 84.86 0.42 -2.67 16 3 Si 0.97 45.18 29.58 68.60 2.03 47.21 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.26 -14.56 9.58 84.04 0.81 -13.75 16 8 H 0.08 3.89 7.88 -2.91 -0.02 3.87 16 9 N -0.61 -31.01 3.00 -698.99 -2.10 -33.11 16 10 C 0.14 5.73 6.51 86.36 0.56 6.29 16 11 C -0.12 -3.68 5.55 30.67 0.17 -3.51 16 12 C 0.17 5.73 2.42 45.02 0.11 5.84 16 13 N -0.70 -18.73 5.03 -445.53 -2.24 -20.97 16 14 C 0.54 16.34 7.55 86.71 0.65 17.00 16 15 O -0.55 -21.92 12.27 -3.99 -0.05 -21.97 16 16 C -0.16 -3.57 5.87 -19.99 -0.12 -3.69 16 17 C -0.07 -0.97 9.52 22.51 0.21 -0.76 16 18 C -0.11 -0.91 10.02 22.24 0.22 -0.69 16 19 C -0.07 -0.56 10.03 22.30 0.22 -0.34 16 20 C -0.13 -1.89 9.77 22.35 0.22 -1.67 16 21 C 0.14 3.34 5.85 38.49 0.23 3.57 16 22 N -0.40 -11.46 2.10 -345.93 -0.73 -12.18 16 23 C -0.02 -0.63 11.23 83.15 0.93 0.30 16 24 C -0.21 -5.92 10.86 22.16 0.24 -5.68 16 25 C -0.23 -7.25 10.86 22.16 0.24 -7.01 16 26 C 0.04 1.21 8.00 83.16 0.67 1.88 16 27 C -0.13 -5.29 5.65 30.67 0.17 -5.11 16 28 C 0.19 9.62 5.29 86.36 0.46 10.08 16 29 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 30 H 0.07 2.64 7.93 -2.38 -0.02 2.62 16 31 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 35 H 0.41 7.64 6.67 -92.71 -0.62 7.02 16 36 H 0.16 1.37 6.45 -2.91 -0.02 1.35 16 37 H 0.17 0.18 8.06 -2.91 -0.02 0.15 16 38 H 0.17 0.19 8.06 -2.91 -0.02 0.17 16 39 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.18 3.67 8.06 -2.91 -0.02 3.65 16 41 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 42 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 43 H 0.14 4.49 7.96 -2.91 -0.02 4.46 16 44 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 46 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 47 H 0.05 3.11 6.10 -2.39 -0.01 3.09 16 Total: -1.00 -78.64 380.09 3.94 -74.70 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.36 Total: 23.66 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 6.42 Total: 0.06 kcal Atomic # 7 Polarization: -118.83 SS G_CDS: -4.82 Total: -123.65 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.05 Total: -21.97 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -78.64 3.94 -74.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932215883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.801 kcal (2) G-P(sol) polarization free energy of solvation -78.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds