Wall clock time and date at job start Sat Apr 11 2020 05:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00315 * 2 1 4 4 H 1.48503 * 109.46987 * 269.99949 * 3 2 1 5 5 H 1.48500 * 109.47008 * 30.00284 * 3 2 1 6 6 H 1.48500 * 109.47228 * 150.00266 * 3 2 1 7 7 C 1.38820 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99990 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99593 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99858 * 180.02562 * 9 7 2 11 11 C 1.53954 * 113.58380 * 205.00589 * 10 9 7 12 12 C 1.52905 * 86.78040 * 220.66109 * 11 10 9 13 13 C 1.52910 * 88.04631 * 24.89586 * 12 11 10 14 14 C 1.52917 * 121.13340 * 150.61456 * 12 11 10 15 15 C 1.53957 * 86.77928 * 150.61497 * 14 12 11 16 16 N 1.46499 * 113.58030 * 220.66444 * 15 14 12 17 17 C 1.34776 * 119.99661 * 205.00293 * 16 15 14 18 18 O 1.21588 * 120.00331 * 359.97438 * 17 16 15 19 19 C 1.47584 * 119.99545 * 180.02562 * 17 16 15 20 20 C 1.40242 * 119.83390 * 359.97438 * 19 17 16 21 21 C 1.36193 * 120.38047 * 180.02562 * 20 19 17 22 22 C 1.39920 * 119.95780 * 359.97438 * 21 20 19 23 23 C 1.46260 * 133.83612 * 180.02562 * 22 21 20 24 24 C 1.34463 * 107.03055 * 179.97438 * 23 22 21 25 25 N 1.36562 * 109.97685 * 359.97438 * 24 23 22 26 26 H 0.96995 * 125.07147 * 179.97438 * 25 24 23 27 27 C 1.37826 * 109.85915 * 0.02562 * 25 24 23 28 28 C 1.38686 * 133.36958 * 180.30447 * 27 25 24 29 29 C 1.52909 * 121.13655 * 259.17353 * 12 11 10 30 30 H 0.96998 * 120.00002 * 0.02562 * 1 2 3 31 31 H 0.97003 * 120.00372 * 0.02562 * 9 7 2 32 32 H 1.09009 * 112.87577 * 336.14358 * 10 9 7 33 33 H 1.08990 * 113.66623 * 106.18266 * 11 10 9 34 34 H 1.09000 * 113.74113 * 335.14493 * 11 10 9 35 35 H 1.09006 * 113.66074 * 89.56978 * 13 12 11 36 36 H 1.08994 * 113.66448 * 220.62942 * 13 12 11 37 37 H 1.08997 * 113.66031 * 265.08631 * 14 12 11 38 38 H 1.09002 * 113.66187 * 36.15037 * 14 12 11 39 39 H 1.09001 * 113.57949 * 89.86751 * 15 14 12 40 40 H 0.96996 * 119.99947 * 24.99948 * 16 15 14 41 41 H 1.07994 * 119.80953 * 359.97438 * 20 19 17 42 42 H 1.07997 * 120.02310 * 180.02562 * 21 20 19 43 43 H 1.08000 * 126.48476 * 359.97321 * 23 22 21 44 44 H 1.07995 * 125.01076 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.16995 * 359.91291 * 28 27 25 46 46 H 1.09001 * 113.66026 * 323.85782 * 29 12 11 47 47 H 1.08998 * 113.65932 * 94.90900 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6568 -0.0005 11 6 1.2583 -4.8296 -0.5970 12 6 1.8331 -5.6836 0.5337 13 6 2.0028 -4.3998 1.3467 14 6 1.0596 -6.8779 1.0939 15 6 2.4292 -7.5034 1.4152 16 7 2.4980 -8.9396 1.1344 17 6 3.3826 -9.7135 1.7938 18 8 4.1240 -9.2197 2.6214 19 6 3.4523 -11.1602 1.5104 20 6 2.5959 -11.7260 0.5547 21 6 2.6503 -13.0598 0.2848 22 6 3.5651 -13.8731 0.9627 23 6 3.8788 -15.3009 0.9172 24 6 4.8641 -15.5162 1.8065 25 7 5.2066 -14.3433 2.4164 26 1 5.8927 -14.2477 3.0953 27 6 4.4310 -13.3157 1.9241 28 6 4.3725 -11.9556 2.1889 29 6 3.0114 -6.6275 0.2910 30 1 -0.4850 0.8400 -0.0004 31 1 0.3554 -2.3881 -0.0005 32 1 3.0652 -3.5646 -0.4067 33 1 1.5970 -5.1306 -1.5882 34 1 0.1778 -4.6980 -0.5400 35 1 1.1316 -4.1462 1.9508 36 1 2.9361 -4.3576 1.9080 37 1 0.4688 -6.6403 1.9785 38 1 0.4946 -7.4259 0.3399 39 1 2.8040 -7.2469 2.4061 40 1 1.9068 -9.3334 0.4739 41 1 1.8887 -11.1005 0.0304 42 1 1.9884 -13.4893 -0.4526 43 1 3.4080 -16.0421 0.2884 44 1 5.3183 -16.4750 2.0080 45 1 5.0341 -11.5162 2.9207 46 1 2.9948 -7.1050 -0.6887 47 1 3.9796 -6.1899 0.5342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965279697.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:43 Heat of formation + Delta-G solvation = 78.462032 kcal Electronic energy + Delta-G solvation = -27358.236095 eV Core-core repulsion = 23507.870693 eV Total energy + Delta-G solvation = -3850.365402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.68874 -40.54620 -39.31216 -36.91570 -35.84205 -33.65732 -32.40721 -32.19701 -29.96003 -29.57718 -29.15628 -25.73274 -25.15999 -24.71538 -23.76588 -22.95223 -21.98947 -21.16262 -20.53036 -20.02919 -18.73885 -17.73968 -17.21385 -17.00507 -16.58408 -16.25492 -15.35063 -15.09274 -14.98892 -14.69896 -14.61236 -14.34444 -14.16467 -14.04520 -13.69201 -13.53629 -13.31981 -12.81298 -12.56853 -12.50305 -12.30382 -11.97358 -11.83690 -11.59321 -11.40595 -11.24386 -11.15424 -10.82677 -10.72746 -10.30264 -10.19409 -10.07513 -9.95036 -9.75998 -9.65022 -9.35455 -9.06719 -8.82504 -8.68524 -8.18835 -6.91753 -5.74982 -3.03114 0.42021 1.07405 2.15099 2.58819 2.79165 3.10830 3.45449 3.50814 3.52450 3.63332 4.24127 4.38806 4.49405 4.60079 4.61364 4.68526 4.73944 4.83606 4.85860 4.94207 4.98054 5.12306 5.23497 5.42980 5.47923 5.48712 5.58441 5.61308 5.75233 5.84925 5.92870 5.95239 5.98871 6.02025 6.07526 6.14304 6.18839 6.24238 6.27718 6.29627 6.40608 6.45886 6.56315 6.65437 6.69429 6.97858 7.01469 7.18033 7.40570 7.73443 8.09363 8.44063 9.55068 10.14077 10.48489 11.47586 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.040676 B = 0.001601 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.199539 B =17484.701661 C =17843.778541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.168 3.832 11 C -0.135 4.135 12 C -0.101 4.101 13 C -0.142 4.142 14 C -0.131 4.131 15 C 0.123 3.877 16 N -0.712 5.712 17 C 0.560 3.440 18 O -0.541 6.541 19 C -0.118 4.118 20 C -0.114 4.114 21 C -0.079 4.079 22 C -0.088 4.088 23 C -0.211 4.211 24 C 0.060 3.940 25 N -0.592 5.592 26 H 0.418 0.582 27 C 0.080 3.920 28 C -0.059 4.059 29 C -0.125 4.125 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.399 0.601 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.149 0.851 44 H 0.173 0.827 45 H 0.135 0.865 46 H 0.083 0.917 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.532 -34.875 1.910 35.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.056 3.944 11 C -0.174 4.174 12 C -0.102 4.102 13 C -0.183 4.183 14 C -0.169 4.169 15 C 0.019 3.981 16 N -0.363 5.363 17 C 0.347 3.653 18 O -0.419 6.419 19 C -0.122 4.122 20 C -0.133 4.133 21 C -0.097 4.097 22 C -0.093 4.093 23 C -0.236 4.236 24 C -0.067 4.067 25 N -0.194 5.194 26 H 0.255 0.745 27 C -0.026 4.026 28 C -0.081 4.081 29 C -0.163 4.163 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.133 0.867 40 H 0.235 0.765 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.167 0.833 44 H 0.190 0.810 45 H 0.152 0.848 46 H 0.101 0.899 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.274 -34.323 2.593 35.181 hybrid contribution 0.148 0.636 0.009 0.653 sum 7.421 -33.687 2.601 34.593 Atomic orbital electron populations 1.69658 1.05126 1.25653 1.57741 1.24752 0.95511 0.97727 1.02978 0.86196 0.78700 0.83858 0.77494 1.21739 1.21793 1.20740 1.19330 0.91106 0.84295 1.42593 0.91103 1.42418 1.05726 0.99924 1.87058 1.21545 0.95270 0.84853 0.92735 1.23260 1.00553 0.97213 0.96423 1.22089 0.96227 0.92398 0.99505 1.23601 1.01332 0.93605 0.99752 1.23187 0.95538 0.96941 1.01214 1.22646 0.97751 0.77476 1.00201 1.45968 1.38858 1.09039 1.42416 1.18184 0.80278 0.85991 0.80805 1.90781 1.41971 1.75053 1.34088 1.19548 0.99403 0.93089 1.00161 1.20725 0.99310 0.95260 0.98037 1.20180 0.97691 0.92635 0.99220 1.19413 0.97839 0.93946 0.98083 1.21758 1.02685 0.94208 1.04972 1.21925 0.98754 0.89869 0.96174 1.41801 1.34246 1.06158 1.37229 0.74486 1.18101 0.95957 0.89811 0.98773 1.20092 0.98714 0.89316 0.99928 1.23148 0.98345 0.96262 0.98565 0.93526 0.78129 0.90797 0.92283 0.90221 0.90119 0.92521 0.90763 0.89904 0.86729 0.76499 0.85531 0.85329 0.83341 0.81005 0.84760 0.89863 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.80 9.97 -15.06 -0.15 -6.95 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.71 -18.06 5.40 -52.47 -0.28 -18.34 16 10 C 0.17 3.36 4.48 -66.95 -0.30 3.06 16 11 C -0.14 -2.20 7.59 -26.28 -0.20 -2.40 16 12 C -0.10 -1.43 1.11 -154.71 -0.17 -1.60 16 13 C -0.14 -2.48 7.64 -26.28 -0.20 -2.68 16 14 C -0.13 -1.53 7.59 -26.28 -0.20 -1.73 16 15 C 0.12 1.49 4.24 -66.95 -0.28 1.21 16 16 N -0.71 -7.44 5.30 -53.87 -0.29 -7.73 16 17 C 0.56 6.97 7.76 -12.45 -0.10 6.87 16 18 O -0.54 -8.71 15.91 5.29 0.08 -8.63 16 19 C -0.12 -1.22 5.87 -104.94 -0.62 -1.84 16 20 C -0.11 -0.92 9.46 -39.56 -0.37 -1.30 16 21 C -0.08 -0.61 10.03 -39.69 -0.40 -1.01 16 22 C -0.09 -0.76 6.37 -105.04 -0.67 -1.42 16 23 C -0.21 -1.36 11.08 -37.69 -0.42 -1.78 16 24 C 0.06 0.29 11.81 -16.78 -0.20 0.09 16 25 N -0.59 -3.49 6.07 -10.68 -0.06 -3.55 16 26 H 0.42 1.34 8.96 -40.82 -0.37 0.98 16 27 C 0.08 0.71 7.26 -84.00 -0.61 0.10 16 28 C -0.06 -0.60 9.61 -39.03 -0.37 -0.97 16 29 C -0.12 -1.58 7.64 -26.28 -0.20 -1.78 16 30 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.38 10.29 7.92 -40.82 -0.32 9.96 16 32 H 0.07 1.50 8.10 -51.92 -0.42 1.08 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.34 8.12 -51.93 -0.42 0.92 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.83 8.12 -51.93 -0.42 0.40 16 39 H 0.11 1.61 7.47 -51.93 -0.39 1.22 16 40 H 0.40 3.05 6.72 -40.82 -0.27 2.78 16 41 H 0.13 0.72 6.36 -52.49 -0.33 0.38 16 42 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 43 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.17 0.20 8.06 -52.49 -0.42 -0.22 16 45 H 0.13 1.35 7.62 -52.49 -0.40 0.95 16 46 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -34.67 390.18 -11.23 -45.90 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -6.70 Total: 11.16 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -5.56 Total: -14.62 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.09 Total: -57.26 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.08 Total: -8.63 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.67 -11.23 -45.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965279697.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.363 kcal (2) G-P(sol) polarization free energy of solvation -34.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds