Wall clock time and date at job start Sat Apr 11 2020 05:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00315 * 2 1 4 4 H 1.48503 * 109.46987 * 269.99949 * 3 2 1 5 5 H 1.48500 * 109.47008 * 30.00284 * 3 2 1 6 6 H 1.48500 * 109.47228 * 150.00266 * 3 2 1 7 7 C 1.38820 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99990 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99593 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99858 * 180.02562 * 9 7 2 11 11 C 1.53954 * 113.58380 * 205.00589 * 10 9 7 12 12 C 1.52905 * 86.78040 * 220.66109 * 11 10 9 13 13 C 1.52910 * 88.04631 * 24.89586 * 12 11 10 14 14 C 1.52917 * 121.13340 * 150.61456 * 12 11 10 15 15 C 1.53957 * 86.77928 * 150.61497 * 14 12 11 16 16 N 1.46499 * 113.58030 * 220.66444 * 15 14 12 17 17 C 1.34776 * 119.99661 * 205.00293 * 16 15 14 18 18 O 1.21588 * 120.00331 * 359.97438 * 17 16 15 19 19 C 1.47584 * 119.99545 * 180.02562 * 17 16 15 20 20 C 1.40242 * 119.83390 * 359.97438 * 19 17 16 21 21 C 1.36193 * 120.38047 * 180.02562 * 20 19 17 22 22 C 1.39920 * 119.95780 * 359.97438 * 21 20 19 23 23 C 1.46260 * 133.83612 * 180.02562 * 22 21 20 24 24 C 1.34463 * 107.03055 * 179.97438 * 23 22 21 25 25 N 1.36562 * 109.97685 * 359.97438 * 24 23 22 26 26 H 0.96995 * 125.07147 * 179.97438 * 25 24 23 27 27 C 1.37826 * 109.85915 * 0.02562 * 25 24 23 28 28 C 1.38686 * 133.36958 * 180.30447 * 27 25 24 29 29 C 1.52909 * 121.13655 * 259.17353 * 12 11 10 30 30 H 0.96998 * 120.00002 * 0.02562 * 1 2 3 31 31 H 0.97003 * 120.00372 * 0.02562 * 9 7 2 32 32 H 1.09009 * 112.87577 * 336.14358 * 10 9 7 33 33 H 1.08990 * 113.66623 * 106.18266 * 11 10 9 34 34 H 1.09000 * 113.74113 * 335.14493 * 11 10 9 35 35 H 1.09006 * 113.66074 * 89.56978 * 13 12 11 36 36 H 1.08994 * 113.66448 * 220.62942 * 13 12 11 37 37 H 1.08997 * 113.66031 * 265.08631 * 14 12 11 38 38 H 1.09002 * 113.66187 * 36.15037 * 14 12 11 39 39 H 1.09001 * 113.57949 * 89.86751 * 15 14 12 40 40 H 0.96996 * 119.99947 * 24.99948 * 16 15 14 41 41 H 1.07994 * 119.80953 * 359.97438 * 20 19 17 42 42 H 1.07997 * 120.02310 * 180.02562 * 21 20 19 43 43 H 1.08000 * 126.48476 * 359.97321 * 23 22 21 44 44 H 1.07995 * 125.01076 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.16995 * 359.91291 * 28 27 25 46 46 H 1.09001 * 113.66026 * 323.85782 * 29 12 11 47 47 H 1.08998 * 113.65932 * 94.90900 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6568 -0.0005 11 6 1.2583 -4.8296 -0.5970 12 6 1.8331 -5.6836 0.5337 13 6 2.0028 -4.3998 1.3467 14 6 1.0596 -6.8779 1.0939 15 6 2.4292 -7.5034 1.4152 16 7 2.4980 -8.9396 1.1344 17 6 3.3826 -9.7135 1.7938 18 8 4.1240 -9.2197 2.6214 19 6 3.4523 -11.1602 1.5104 20 6 2.5959 -11.7260 0.5547 21 6 2.6503 -13.0598 0.2848 22 6 3.5651 -13.8731 0.9627 23 6 3.8788 -15.3009 0.9172 24 6 4.8641 -15.5162 1.8065 25 7 5.2066 -14.3433 2.4164 26 1 5.8927 -14.2477 3.0953 27 6 4.4310 -13.3157 1.9241 28 6 4.3725 -11.9556 2.1889 29 6 3.0114 -6.6275 0.2910 30 1 -0.4850 0.8400 -0.0004 31 1 0.3554 -2.3881 -0.0005 32 1 3.0652 -3.5646 -0.4067 33 1 1.5970 -5.1306 -1.5882 34 1 0.1778 -4.6980 -0.5400 35 1 1.1316 -4.1462 1.9508 36 1 2.9361 -4.3576 1.9080 37 1 0.4688 -6.6403 1.9785 38 1 0.4946 -7.4259 0.3399 39 1 2.8040 -7.2469 2.4061 40 1 1.9068 -9.3334 0.4739 41 1 1.8887 -11.1005 0.0304 42 1 1.9884 -13.4893 -0.4526 43 1 3.4080 -16.0421 0.2884 44 1 5.3183 -16.4750 2.0080 45 1 5.0341 -11.5162 2.9207 46 1 2.9948 -7.1050 -0.6887 47 1 3.9796 -6.1899 0.5342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965279697.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:41 Heat of formation + Delta-G solvation = 56.493719 kcal Electronic energy + Delta-G solvation = -27359.188713 eV Core-core repulsion = 23507.870693 eV Total energy + Delta-G solvation = -3851.318020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.23948 -41.63789 -40.35135 -37.61856 -37.18096 -35.27644 -33.67351 -32.93305 -31.50230 -30.37187 -29.88533 -26.75474 -26.56399 -26.22641 -25.08658 -23.55581 -23.13497 -21.64520 -21.46596 -21.34021 -19.51463 -19.26171 -18.59441 -17.89641 -17.43712 -16.98939 -16.90345 -16.14252 -16.08537 -15.76426 -15.72822 -15.28625 -15.20713 -14.95538 -14.80702 -14.52242 -14.20402 -13.90424 -13.80986 -13.62853 -13.20061 -13.04488 -12.98008 -12.85513 -12.77726 -12.58355 -12.36726 -12.32206 -12.14543 -12.02244 -11.83550 -11.30189 -11.06644 -11.01419 -10.83990 -10.77272 -10.69430 -10.04269 -9.27653 -8.96390 -8.70459 -7.94351 -5.22034 -0.24832 0.48088 1.47009 1.48482 1.56983 1.60806 2.01443 2.04644 2.37287 2.56794 2.94896 3.37052 3.50850 3.56340 3.64364 3.73224 3.79116 3.87082 3.98169 4.02277 4.16804 4.29771 4.30482 4.33972 4.38390 4.49672 4.63322 4.68982 4.74500 4.81734 4.84636 4.96154 5.00900 5.02887 5.03321 5.07343 5.10796 5.14350 5.26711 5.31314 5.45217 5.48931 5.56564 5.62416 5.70127 5.72590 5.77687 6.10307 6.28584 6.56454 6.64386 7.21205 7.34253 8.12535 8.35546 9.28979 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.040676 B = 0.001601 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.199539 B =17484.701661 C =17843.778541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.971 3.029 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.245 4.245 8 H 0.074 0.926 9 N -0.728 5.728 10 C 0.145 3.855 11 C -0.121 4.121 12 C -0.089 4.089 13 C -0.139 4.139 14 C -0.116 4.116 15 C 0.127 3.873 16 N -0.697 5.697 17 C 0.558 3.442 18 O -0.588 6.588 19 C -0.138 4.138 20 C -0.112 4.112 21 C -0.083 4.083 22 C -0.103 4.103 23 C -0.232 4.232 24 C 0.075 3.925 25 N -0.589 5.589 26 H 0.429 0.571 27 C 0.059 3.941 28 C -0.072 4.072 29 C -0.119 4.119 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.416 0.584 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.168 0.832 44 H 0.213 0.787 45 H 0.121 0.879 46 H 0.105 0.895 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.723 -37.960 0.773 38.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.377 4.377 8 H 0.091 0.909 9 N -0.365 5.365 10 C 0.036 3.964 11 C -0.159 4.159 12 C -0.090 4.090 13 C -0.180 4.180 14 C -0.154 4.154 15 C 0.022 3.978 16 N -0.348 5.348 17 C 0.347 3.653 18 O -0.470 6.470 19 C -0.142 4.142 20 C -0.132 4.132 21 C -0.101 4.101 22 C -0.108 4.108 23 C -0.257 4.257 24 C -0.052 4.052 25 N -0.192 5.192 26 H 0.268 0.732 27 C -0.048 4.048 28 C -0.094 4.094 29 C -0.158 4.158 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.131 0.869 39 H 0.109 0.891 40 H 0.255 0.745 41 H 0.170 0.830 42 H 0.172 0.828 43 H 0.186 0.814 44 H 0.230 0.770 45 H 0.139 0.861 46 H 0.124 0.876 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.487 -37.467 1.440 38.235 hybrid contribution 0.173 1.427 0.387 1.488 sum 7.660 -36.040 1.826 36.891 Atomic orbital electron populations 1.69808 1.06543 1.26010 1.59629 1.25543 0.96389 1.01010 1.03829 0.85167 0.77662 0.79649 0.77461 1.21286 1.22162 1.19698 1.19711 0.91467 0.85600 1.40960 0.90851 1.42589 1.05360 1.01024 1.87573 1.21930 0.95354 0.84114 0.95032 1.23090 0.99811 0.95229 0.97815 1.21875 0.97803 0.91991 0.97311 1.23405 1.00578 0.95540 0.98475 1.23164 0.95215 0.95203 1.01788 1.22386 0.97973 0.78455 0.98947 1.45773 1.38569 1.08147 1.42301 1.18559 0.79684 0.86964 0.80066 1.90752 1.43955 1.76032 1.36261 1.19475 1.01022 0.91813 1.01922 1.20947 0.99036 0.95871 0.97316 1.20517 0.97724 0.92453 0.99394 1.19896 0.97746 0.95342 0.97834 1.22107 1.03739 0.93545 1.06276 1.22631 0.97554 0.90624 0.94427 1.41947 1.34034 1.05937 1.37291 0.73228 1.18187 0.97138 0.89819 0.99698 1.20101 0.98923 0.90274 1.00089 1.23180 0.97022 0.95721 0.99839 0.94034 0.79382 0.91336 0.90632 0.90565 0.91484 0.92931 0.90843 0.86856 0.89078 0.74489 0.83038 0.82824 0.81431 0.77034 0.86066 0.87628 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.10 13.06 21.65 0.28 -59.82 16 2 C -0.08 -4.42 5.50 84.87 0.47 -3.95 16 3 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.25 -13.99 9.97 84.04 0.84 -13.15 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.73 -37.56 5.40 -319.91 -1.73 -39.29 16 10 C 0.15 5.84 4.48 45.63 0.20 6.04 16 11 C -0.12 -3.76 7.59 30.88 0.23 -3.52 16 12 C -0.09 -2.38 1.11 -52.31 -0.06 -2.44 16 13 C -0.14 -4.92 7.64 30.88 0.24 -4.68 16 14 C -0.12 -2.43 7.59 30.89 0.23 -2.19 16 15 C 0.13 2.93 4.24 45.63 0.19 3.12 16 16 N -0.70 -13.46 5.30 -442.62 -2.35 -15.80 16 17 C 0.56 13.89 7.76 86.71 0.67 14.57 16 18 O -0.59 -19.78 15.91 -3.99 -0.06 -19.84 16 19 C -0.14 -2.83 5.87 -20.07 -0.12 -2.95 16 20 C -0.11 -1.61 9.46 22.28 0.21 -1.40 16 21 C -0.08 -1.10 10.03 22.20 0.22 -0.88 16 22 C -0.10 -1.60 6.37 -20.14 -0.13 -1.73 16 23 C -0.23 -2.39 11.08 23.49 0.26 -2.13 16 24 C 0.08 0.51 11.81 83.09 0.98 1.49 16 25 N -0.59 -6.05 6.07 -187.71 -1.14 -7.19 16 26 H 0.43 2.24 8.96 -92.71 -0.83 1.40 16 27 C 0.06 1.00 7.26 38.96 0.28 1.29 16 28 C -0.07 -1.50 9.61 22.63 0.22 -1.29 16 29 C -0.12 -2.83 7.64 30.88 0.24 -2.59 16 30 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.37 20.54 7.92 -92.71 -0.73 19.81 16 32 H 0.07 2.80 8.10 -2.38 -0.02 2.78 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.08 2.46 8.12 -2.39 -0.02 2.44 16 35 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.11 1.77 8.12 -2.39 -0.02 1.75 16 39 H 0.09 2.60 7.47 -2.39 -0.02 2.58 16 40 H 0.42 5.10 6.72 -92.71 -0.62 4.48 16 41 H 0.15 1.24 6.36 -2.91 -0.02 1.22 16 42 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 43 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 44 H 0.21 -0.41 8.06 -2.91 -0.02 -0.44 16 45 H 0.12 2.68 7.62 -2.91 -0.02 2.66 16 46 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -77.85 390.18 1.06 -76.80 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: -1.16 Total: 32.49 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 5.19 Total: -16.40 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -4.93 Total: -122.10 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.06 Total: -19.84 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -77.85 1.06 -76.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965279697.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.289 kcal (2) G-P(sol) polarization free energy of solvation -77.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds