Wall clock time and date at job start Sat Apr 11 2020 05:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39044 * 121.01979 * 2 1 4 4 C 1.47760 * 120.26678 * 359.97438 * 3 2 1 5 5 O 1.21569 * 119.99757 * 353.49359 * 4 3 2 6 6 N 1.34778 * 119.99885 * 173.49968 * 4 3 2 7 7 C 1.46495 * 119.99772 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.47301 * 324.99949 * 7 6 4 9 9 C 1.53008 * 109.47346 * 84.99899 * 7 6 4 10 10 C 1.52994 * 109.47211 * 204.99926 * 7 6 4 11 11 C 1.53501 * 114.20962 * 180.02562 * 10 7 6 12 12 N 1.47064 * 87.98420 * 220.34387 * 11 10 7 13 13 C 1.36939 * 136.05524 * 207.08776 * 12 11 10 14 14 H 1.07997 * 120.00297 * 357.89132 * 13 12 11 15 15 C 1.38817 * 119.99947 * 177.90363 * 13 12 11 16 16 N 1.31618 * 120.00044 * 175.59288 * 15 13 12 17 17 Si 1.86801 * 120.00083 * 355.59032 * 15 13 12 18 18 H 1.48490 * 109.47224 * 174.30312 * 17 15 13 19 19 H 1.48502 * 109.47107 * 294.30426 * 17 15 13 20 20 H 1.48506 * 109.46826 * 54.30229 * 17 15 13 21 21 C 1.47064 * 87.88618 * 27.34011 * 12 11 10 22 22 C 1.40555 * 119.46450 * 179.70395 * 3 2 1 23 23 N 1.30825 * 121.54276 * 0.27242 * 22 3 2 24 24 C 1.33794 * 121.71474 * 359.97438 * 23 22 3 25 25 C 1.40535 * 120.82375 * 180.02562 * 24 23 22 26 26 C 1.36133 * 119.81284 * 179.97438 * 25 24 23 27 27 C 1.39341 * 121.09395 * 0.02562 * 26 25 24 28 28 C 1.36133 * 120.83896 * 359.97377 * 27 26 25 29 29 C 1.40493 * 121.01872 * 180.23595 * 2 1 3 30 30 H 1.08992 * 109.47098 * 83.86199 * 1 2 3 31 31 H 1.09005 * 109.46937 * 203.86250 * 1 2 3 32 32 H 1.08996 * 109.47208 * 323.85875 * 1 2 3 33 33 H 0.96993 * 119.99852 * 359.97438 * 6 4 3 34 34 H 1.09000 * 109.46879 * 59.99792 * 9 7 6 35 35 H 1.09000 * 109.46966 * 179.97438 * 9 7 6 36 36 H 1.09003 * 109.46541 * 300.00167 * 9 7 6 37 37 H 1.09002 * 113.41633 * 313.20035 * 10 7 6 38 38 H 1.08997 * 113.47050 * 105.56131 * 11 10 7 39 39 H 1.09001 * 113.51765 * 335.13206 * 11 10 7 40 40 H 0.96998 * 119.99932 * 354.89351 * 16 15 13 41 41 H 1.08996 * 113.46939 * 87.44252 * 21 12 11 42 42 H 1.09003 * 113.46687 * 217.87460 * 21 12 11 43 43 H 1.07997 * 119.23216 * 180.28907 * 22 3 2 44 44 H 1.07994 * 120.09475 * 0.02562 * 25 24 23 45 45 H 1.07996 * 119.45227 * 179.97438 * 26 25 24 46 46 H 1.08000 * 119.58470 * 179.97438 * 27 26 25 47 47 H 1.08006 * 120.19317 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2236 1.1916 0.0000 4 6 1.5137 2.4875 -0.0006 5 8 0.3043 2.5180 -0.1203 6 7 2.2070 3.6357 0.1316 7 6 1.5032 4.9205 0.1304 8 1 0.6542 4.8691 -0.5511 9 6 1.0048 5.2304 1.5435 10 6 2.4583 6.0248 -0.3270 11 6 1.8290 7.4243 -0.3678 12 7 2.5590 7.6592 -1.6226 13 6 3.0512 8.7505 -2.2875 14 1 2.8954 9.7417 -1.8882 15 6 3.7501 8.5827 -3.4751 16 7 4.1479 9.6346 -4.1589 17 14 4.1263 6.8639 -4.1026 18 1 4.7542 6.9535 -5.4453 19 1 5.0579 6.1874 -3.1647 20 1 2.8658 6.0844 -4.1966 21 6 2.5222 6.2071 -1.8523 22 6 3.6286 1.1534 0.0063 23 7 4.2825 0.0203 0.0069 24 6 3.6482 -1.1577 0.0021 25 6 4.3695 -2.3639 0.0034 26 6 3.7031 -3.5510 -0.0011 27 6 2.3104 -3.5944 -0.0075 28 6 1.5765 -2.4478 -0.0089 29 6 2.2310 -1.2040 -0.0050 30 1 -0.3633 0.1099 -1.0217 31 1 -0.3633 -0.9399 0.4158 32 1 -0.3633 0.8299 0.6061 33 1 3.1719 3.6113 0.2274 34 1 1.8539 5.2817 2.2251 35 1 0.4816 6.1866 1.5427 36 1 0.3244 4.4436 1.8693 37 1 3.4311 5.9866 0.1632 38 1 2.1517 8.0693 0.4495 39 1 0.7461 7.4108 -0.4915 40 1 3.8895 10.5248 -3.8733 41 1 1.6222 5.8718 -2.3677 42 1 3.4356 5.8151 -2.3000 43 1 4.1814 2.0812 0.0111 44 1 5.4493 -2.3491 0.0088 45 1 4.2632 -4.4743 -0.0005 46 1 1.8067 -4.5497 -0.0114 47 1 0.4974 -2.4936 -0.0135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970177639.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:54 Heat of formation + Delta-G solvation = 83.081064 kcal Electronic energy + Delta-G solvation = -28677.516418 eV Core-core repulsion = 24827.351312 eV Total energy + Delta-G solvation = -3850.165106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.43914 -39.93341 -38.67079 -37.22368 -35.46117 -34.55486 -32.55216 -31.67883 -30.68924 -30.18620 -28.14973 -27.76525 -25.53953 -24.77218 -24.26830 -23.66919 -21.53646 -21.45498 -20.64480 -19.62088 -18.44278 -18.10603 -17.53079 -17.23834 -16.22341 -16.00183 -15.48828 -15.38920 -14.86044 -14.74608 -14.47147 -14.35295 -14.04257 -13.90758 -13.71211 -13.28637 -13.14579 -13.08157 -12.92998 -12.48738 -12.27851 -12.15974 -12.09687 -11.90957 -11.85238 -11.82993 -11.47687 -10.98871 -10.66424 -10.51297 -10.49666 -10.29095 -10.10490 -9.55324 -9.30681 -9.17301 -9.03810 -8.99370 -8.92809 -8.57551 -7.17305 -6.30989 -3.23522 -0.10286 0.27068 1.50952 2.25905 3.01053 3.03035 3.40543 3.44373 3.65852 3.74939 3.85498 4.12861 4.30245 4.33577 4.43825 4.57437 4.59431 4.67228 4.72204 4.83854 4.88529 5.02552 5.07060 5.09901 5.32100 5.40360 5.43452 5.46395 5.51955 5.54032 5.61307 5.65841 5.72138 5.80336 5.86777 5.97090 5.98513 6.06593 6.11982 6.17142 6.19532 6.23803 6.27164 6.36601 6.41385 6.53464 6.88190 7.08612 7.40927 7.52715 8.09576 8.22825 8.96939 9.49381 10.34634 11.20680 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016162 B = 0.002666 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.054383 B =10498.391276 C =11531.259310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.049 3.951 3 C -0.203 4.203 4 C 0.565 3.435 5 O -0.532 6.532 6 N -0.715 5.715 7 C 0.153 3.847 8 H 0.092 0.908 9 C -0.158 4.158 10 C -0.142 4.142 11 C 0.136 3.864 12 N -0.629 5.629 13 C -0.303 4.303 14 H 0.083 0.917 15 C -0.025 4.025 16 N -0.935 5.935 17 Si 1.072 2.928 18 H -0.296 1.296 19 H -0.293 1.293 20 H -0.289 1.289 21 C 0.108 3.892 22 C 0.168 3.832 23 N -0.481 5.481 24 C 0.145 3.855 25 C -0.099 4.099 26 C -0.092 4.092 27 C -0.123 4.123 28 C -0.086 4.086 29 C -0.115 4.115 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.399 0.601 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.048 0.952 39 H 0.040 0.960 40 H 0.261 0.739 41 H 0.044 0.956 42 H 0.047 0.953 43 H 0.163 0.837 44 H 0.138 0.862 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.742 -27.526 13.157 30.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.040 3.960 3 C -0.208 4.208 4 C 0.352 3.648 5 O -0.410 6.410 6 N -0.365 5.365 7 C 0.048 3.952 8 H 0.110 0.890 9 C -0.216 4.216 10 C -0.162 4.162 11 C 0.009 3.991 12 N -0.357 5.357 13 C -0.429 4.429 14 H 0.100 0.900 15 C -0.224 4.224 16 N -0.578 5.578 17 Si 0.905 3.095 18 H -0.224 1.224 19 H -0.222 1.222 20 H -0.216 1.216 21 C -0.018 4.018 22 C -0.006 4.006 23 N -0.189 5.189 24 C 0.024 3.976 25 C -0.117 4.117 26 C -0.112 4.112 27 C -0.141 4.141 28 C -0.105 4.105 29 C -0.117 4.117 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.234 0.766 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.180 0.820 44 H 0.156 0.844 45 H 0.149 0.851 46 H 0.147 0.853 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.792 -28.168 11.734 30.749 hybrid contribution -1.136 0.940 1.154 1.873 sum -4.929 -27.228 12.887 30.524 Atomic orbital electron populations 1.21197 0.88671 1.03824 1.04599 1.20677 0.97309 0.90489 0.87520 1.20818 0.95145 0.94331 1.10548 1.17905 0.86954 0.83354 0.76611 1.90726 1.13483 1.86995 1.49817 1.46055 1.10952 1.05875 1.73644 1.21057 0.95484 0.80895 0.97714 0.88968 1.22123 1.01262 1.02111 0.96149 1.23595 0.99310 0.94926 0.98381 1.22235 0.95265 0.91470 0.90151 1.46004 1.64968 1.02009 1.22734 1.20175 1.32374 0.85051 1.05285 0.89966 1.25705 0.97522 1.05800 0.93349 1.70913 1.47537 0.98496 1.40805 0.83693 0.76008 0.74450 0.75327 1.22357 1.22152 1.21597 1.22815 0.99156 0.86754 0.93050 1.23062 0.90168 0.96671 0.90679 1.67966 1.39466 0.97461 1.13987 1.19022 0.89598 0.92644 0.96328 1.20852 1.00635 0.90073 1.00188 1.20998 0.94534 0.98077 0.97588 1.20949 0.94124 0.98606 1.00444 1.21122 1.00376 0.91006 0.97965 1.18730 0.94011 0.94091 1.04851 0.89337 0.91617 0.87633 0.76593 0.92485 0.91155 0.92495 0.88272 0.93393 0.94231 0.92945 0.93830 0.93552 0.82020 0.84429 0.85087 0.85281 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 8.48 36.01 0.31 -0.90 16 2 C 0.05 0.53 5.99 -103.47 -0.62 -0.09 16 3 C -0.20 -2.36 5.88 -104.83 -0.62 -2.98 16 4 C 0.56 7.24 7.68 -12.37 -0.09 7.15 16 5 O -0.53 -7.97 13.12 5.31 0.07 -7.90 16 6 N -0.71 -8.45 5.03 -54.78 -0.28 -8.73 16 7 C 0.15 2.04 2.47 -67.93 -0.17 1.87 16 8 H 0.09 1.40 7.32 -51.93 -0.38 1.02 16 9 C -0.16 -1.82 9.29 37.16 0.35 -1.48 16 10 C -0.14 -2.26 3.67 -89.97 -0.33 -2.59 16 11 C 0.14 2.55 7.33 -8.51 -0.06 2.48 16 12 N -0.63 -15.36 3.69 -184.60 -0.68 -16.04 16 13 C -0.30 -8.77 11.09 -15.06 -0.17 -8.93 16 14 H 0.08 2.50 8.05 -52.49 -0.42 2.08 16 15 C -0.03 -0.76 5.50 -17.43 -0.10 -0.85 16 16 N -0.94 -29.79 13.70 55.49 0.76 -29.03 16 17 Si 1.07 27.18 25.02 -169.99 -4.25 22.92 16 18 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 19 H -0.29 -6.97 6.79 56.52 0.38 -6.58 16 20 H -0.29 -6.88 6.22 56.52 0.35 -6.53 16 21 C 0.11 2.23 5.40 -8.38 -0.05 2.19 16 22 C 0.17 1.84 10.67 -17.11 -0.18 1.66 16 23 N -0.48 -5.79 10.30 -10.68 -0.11 -5.90 16 24 C 0.14 1.62 6.61 -84.78 -0.56 1.06 16 25 C -0.10 -0.87 9.97 -39.47 -0.39 -1.27 16 26 C -0.09 -0.61 9.94 -39.93 -0.40 -1.01 16 27 C -0.12 -0.79 9.96 -39.93 -0.40 -1.19 16 28 C -0.09 -0.67 9.32 -39.47 -0.37 -1.04 16 29 C -0.11 -1.19 5.74 -106.81 -0.61 -1.81 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.45 6.23 -51.93 -0.32 0.13 16 32 H 0.11 1.16 5.93 -51.93 -0.31 0.86 16 33 H 0.40 3.86 6.67 -40.82 -0.27 3.58 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.79 7.48 -51.93 -0.39 0.40 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.26 8.18 8.73 -40.82 -0.36 7.83 16 41 H 0.04 0.92 7.80 -51.93 -0.41 0.51 16 42 H 0.05 1.00 4.15 -51.93 -0.22 0.79 16 43 H 0.16 1.37 6.42 -52.49 -0.34 1.03 16 44 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 45 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 46 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 47 H 0.14 0.77 6.32 -52.48 -0.33 0.44 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -35.32 374.05 -9.72 -45.04 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.41 Total: 1.71 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -4.46 Total: -7.72 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.31 Total: -59.70 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.07 Total: -7.90 kcal Atomic # 14 Polarization: 27.18 SS G_CDS: -4.25 Total: 22.92 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.32 -9.72 -45.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970177639.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.124 kcal (2) G-P(sol) polarization free energy of solvation -35.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds