Wall clock time and date at job start Sat Apr 11 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39044 * 121.01979 * 2 1 4 4 C 1.47760 * 120.26678 * 359.97438 * 3 2 1 5 5 O 1.21569 * 119.99757 * 353.49359 * 4 3 2 6 6 N 1.34778 * 119.99885 * 173.49968 * 4 3 2 7 7 C 1.46495 * 119.99772 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.47301 * 324.99949 * 7 6 4 9 9 C 1.53008 * 109.47346 * 84.99899 * 7 6 4 10 10 C 1.52994 * 109.47211 * 204.99926 * 7 6 4 11 11 C 1.53501 * 114.20962 * 180.02562 * 10 7 6 12 12 N 1.47064 * 87.98420 * 220.34387 * 11 10 7 13 13 C 1.36939 * 136.05524 * 207.08776 * 12 11 10 14 14 H 1.07997 * 120.00297 * 357.89132 * 13 12 11 15 15 C 1.38817 * 119.99947 * 177.90363 * 13 12 11 16 16 N 1.31618 * 120.00044 * 175.59288 * 15 13 12 17 17 Si 1.86801 * 120.00083 * 355.59032 * 15 13 12 18 18 H 1.48490 * 109.47224 * 174.30312 * 17 15 13 19 19 H 1.48502 * 109.47107 * 294.30426 * 17 15 13 20 20 H 1.48506 * 109.46826 * 54.30229 * 17 15 13 21 21 C 1.47064 * 87.88618 * 27.34011 * 12 11 10 22 22 C 1.40555 * 119.46450 * 179.70395 * 3 2 1 23 23 N 1.30825 * 121.54276 * 0.27242 * 22 3 2 24 24 C 1.33794 * 121.71474 * 359.97438 * 23 22 3 25 25 C 1.40535 * 120.82375 * 180.02562 * 24 23 22 26 26 C 1.36133 * 119.81284 * 179.97438 * 25 24 23 27 27 C 1.39341 * 121.09395 * 0.02562 * 26 25 24 28 28 C 1.36133 * 120.83896 * 359.97377 * 27 26 25 29 29 C 1.40493 * 121.01872 * 180.23595 * 2 1 3 30 30 H 1.08992 * 109.47098 * 83.86199 * 1 2 3 31 31 H 1.09005 * 109.46937 * 203.86250 * 1 2 3 32 32 H 1.08996 * 109.47208 * 323.85875 * 1 2 3 33 33 H 0.96993 * 119.99852 * 359.97438 * 6 4 3 34 34 H 1.09000 * 109.46879 * 59.99792 * 9 7 6 35 35 H 1.09000 * 109.46966 * 179.97438 * 9 7 6 36 36 H 1.09003 * 109.46541 * 300.00167 * 9 7 6 37 37 H 1.09002 * 113.41633 * 313.20035 * 10 7 6 38 38 H 1.08997 * 113.47050 * 105.56131 * 11 10 7 39 39 H 1.09001 * 113.51765 * 335.13206 * 11 10 7 40 40 H 0.96998 * 119.99932 * 354.89351 * 16 15 13 41 41 H 1.08996 * 113.46939 * 87.44252 * 21 12 11 42 42 H 1.09003 * 113.46687 * 217.87460 * 21 12 11 43 43 H 1.07997 * 119.23216 * 180.28907 * 22 3 2 44 44 H 1.07994 * 120.09475 * 0.02562 * 25 24 23 45 45 H 1.07996 * 119.45227 * 179.97438 * 26 25 24 46 46 H 1.08000 * 119.58470 * 179.97438 * 27 26 25 47 47 H 1.08006 * 120.19317 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2236 1.1916 0.0000 4 6 1.5137 2.4875 -0.0006 5 8 0.3043 2.5180 -0.1203 6 7 2.2070 3.6357 0.1316 7 6 1.5032 4.9205 0.1304 8 1 0.6542 4.8691 -0.5511 9 6 1.0048 5.2304 1.5435 10 6 2.4583 6.0248 -0.3270 11 6 1.8290 7.4243 -0.3678 12 7 2.5590 7.6592 -1.6226 13 6 3.0512 8.7505 -2.2875 14 1 2.8954 9.7417 -1.8882 15 6 3.7501 8.5827 -3.4751 16 7 4.1479 9.6346 -4.1589 17 14 4.1263 6.8639 -4.1026 18 1 4.7542 6.9535 -5.4453 19 1 5.0579 6.1874 -3.1647 20 1 2.8658 6.0844 -4.1966 21 6 2.5222 6.2071 -1.8523 22 6 3.6286 1.1534 0.0063 23 7 4.2825 0.0203 0.0069 24 6 3.6482 -1.1577 0.0021 25 6 4.3695 -2.3639 0.0034 26 6 3.7031 -3.5510 -0.0011 27 6 2.3104 -3.5944 -0.0075 28 6 1.5765 -2.4478 -0.0089 29 6 2.2310 -1.2040 -0.0050 30 1 -0.3633 0.1099 -1.0217 31 1 -0.3633 -0.9399 0.4158 32 1 -0.3633 0.8299 0.6061 33 1 3.1719 3.6113 0.2274 34 1 1.8539 5.2817 2.2251 35 1 0.4816 6.1866 1.5427 36 1 0.3244 4.4436 1.8693 37 1 3.4311 5.9866 0.1632 38 1 2.1517 8.0693 0.4495 39 1 0.7461 7.4108 -0.4915 40 1 3.8895 10.5248 -3.8733 41 1 1.6222 5.8718 -2.3677 42 1 3.4356 5.8151 -2.3000 43 1 4.1814 2.0812 0.0111 44 1 5.4493 -2.3491 0.0088 45 1 4.2632 -4.4743 -0.0005 46 1 1.8067 -4.5497 -0.0114 47 1 0.4974 -2.4936 -0.0135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970177639.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:53 Heat of formation + Delta-G solvation = 59.255322 kcal Electronic energy + Delta-G solvation = -28678.549580 eV Core-core repulsion = 24827.351312 eV Total energy + Delta-G solvation = -3851.198268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.19332 -41.03234 -40.00914 -37.90831 -36.55779 -35.40698 -34.55606 -32.75718 -31.30345 -31.12377 -29.51496 -28.87715 -27.08502 -25.75741 -25.07374 -24.87106 -22.91667 -22.18925 -21.64494 -21.08949 -19.59093 -19.31251 -18.83455 -18.10838 -17.48116 -16.92401 -16.74736 -16.38933 -15.91673 -15.81073 -15.43069 -15.25498 -15.19466 -15.08894 -14.80148 -14.67707 -14.33618 -13.92956 -13.80187 -13.58954 -13.34862 -13.25954 -13.20141 -12.96543 -12.76244 -12.73019 -12.51989 -12.42266 -12.40235 -12.14805 -11.70968 -11.27946 -11.23232 -11.10645 -10.97377 -10.81179 -10.42594 -10.12877 -9.82856 -9.23866 -9.22803 -8.64912 -5.48440 -0.80809 -0.42229 0.82922 1.35892 1.45838 1.52066 1.65630 2.04564 2.21995 2.51768 2.96998 3.04036 3.15535 3.18454 3.42517 3.46423 3.57807 3.63500 3.79505 3.84489 3.95563 4.20192 4.20971 4.31135 4.37408 4.42262 4.44439 4.45934 4.56500 4.59328 4.66280 4.67346 4.71120 4.80620 4.87302 4.93678 4.96692 5.05019 5.05381 5.15518 5.22457 5.31489 5.39216 5.43006 5.43504 5.50127 5.56379 5.84953 5.93763 6.48597 6.68557 6.77681 7.15495 7.31388 8.25407 8.89336 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016162 B = 0.002666 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.054383 B =10498.391276 C =11531.259310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.043 3.957 3 C -0.220 4.220 4 C 0.567 3.433 5 O -0.558 6.558 6 N -0.709 5.709 7 C 0.163 3.837 8 H 0.075 0.925 9 C -0.152 4.152 10 C -0.106 4.106 11 C 0.132 3.868 12 N -0.663 5.663 13 C -0.287 4.287 14 H 0.052 0.948 15 C -0.087 4.087 16 N -0.973 5.973 17 Si 1.110 2.890 18 H -0.307 1.307 19 H -0.267 1.267 20 H -0.269 1.269 21 C 0.096 3.904 22 C 0.162 3.838 23 N -0.503 5.503 24 C 0.120 3.880 25 C -0.121 4.121 26 C -0.079 4.079 27 C -0.117 4.117 28 C -0.094 4.094 29 C -0.130 4.130 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.411 0.589 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.117 0.883 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.246 0.754 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.180 0.820 44 H 0.143 0.857 45 H 0.163 0.837 46 H 0.163 0.837 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 -31.647 14.753 35.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.035 3.965 3 C -0.225 4.225 4 C 0.355 3.645 5 O -0.438 6.438 6 N -0.360 5.360 7 C 0.058 3.942 8 H 0.094 0.906 9 C -0.210 4.210 10 C -0.126 4.126 11 C 0.007 3.993 12 N -0.392 5.392 13 C -0.415 4.415 14 H 0.070 0.930 15 C -0.279 4.279 16 N -0.618 5.618 17 Si 0.937 3.063 18 H -0.236 1.236 19 H -0.193 1.193 20 H -0.194 1.194 21 C -0.028 4.028 22 C -0.012 4.012 23 N -0.211 5.211 24 C 0.000 4.000 25 C -0.140 4.140 26 C -0.098 4.098 27 C -0.134 4.134 28 C -0.112 4.112 29 C -0.132 4.132 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.248 0.752 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.135 0.865 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.197 0.803 44 H 0.160 0.840 45 H 0.181 0.819 46 H 0.181 0.819 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.188 -32.321 13.396 35.237 hybrid contribution -1.098 2.119 0.745 2.500 sum -5.286 -30.202 14.141 33.765 Atomic orbital electron populations 1.21149 0.87894 1.04548 1.04141 1.20937 0.97981 0.90730 0.86864 1.20753 0.95483 0.93906 1.12403 1.18057 0.86644 0.83824 0.75943 1.90716 1.14595 1.87391 1.51103 1.45924 1.11564 1.05110 1.73431 1.20812 0.94167 0.80689 0.98532 0.90644 1.22061 1.01822 1.02201 0.94888 1.23290 1.00391 0.94098 0.94799 1.22470 0.95596 0.93254 0.88001 1.46152 1.65847 1.02504 1.24673 1.20060 1.30950 0.85619 1.04877 0.93036 1.26996 0.98275 1.08364 0.94217 1.71010 1.50055 0.98422 1.42361 0.83253 0.77169 0.71152 0.74745 1.23584 1.19309 1.19447 1.23032 0.98850 0.84369 0.96555 1.23311 0.90091 0.97229 0.90560 1.67975 1.40109 0.98104 1.14898 1.19438 0.90435 0.93136 0.96989 1.21066 1.01133 0.90205 1.01558 1.21433 0.95042 0.98464 0.94871 1.21400 0.94104 0.99581 0.98340 1.21427 1.01609 0.90418 0.97776 1.18933 0.93886 0.94936 1.05490 0.89751 0.88977 0.89298 0.75203 0.90909 0.90751 0.92688 0.86457 0.92423 0.92950 0.94465 0.93834 0.93886 0.80272 0.83967 0.81912 0.81904 0.82715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 8.48 71.24 0.60 -1.56 16 2 C 0.04 0.91 5.99 -19.12 -0.11 0.80 16 3 C -0.22 -4.95 5.88 -20.00 -0.12 -5.07 16 4 C 0.57 13.95 7.68 86.76 0.67 14.62 16 5 O -0.56 -16.38 13.12 -3.93 -0.05 -16.43 16 6 N -0.71 -15.36 5.03 -445.49 -2.24 -17.60 16 7 C 0.16 3.98 2.47 44.99 0.11 4.09 16 8 H 0.08 2.16 7.32 -2.39 -0.02 2.15 16 9 C -0.15 -3.09 9.29 71.98 0.67 -2.42 16 10 C -0.11 -3.10 3.67 -10.37 -0.04 -3.14 16 11 C 0.13 4.71 7.33 83.18 0.61 5.32 16 12 N -0.66 -31.87 3.69 -737.96 -2.72 -34.59 16 13 C -0.29 -16.94 11.09 84.03 0.93 -16.01 16 14 H 0.05 3.26 8.05 -2.91 -0.02 3.24 16 15 C -0.09 -5.31 5.50 84.86 0.47 -4.85 16 16 N -0.97 -64.09 13.70 21.65 0.30 -63.79 16 17 Si 1.11 54.88 25.02 68.60 1.72 56.60 16 18 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16 19 H -0.27 -11.89 6.79 99.48 0.68 -11.22 16 20 H -0.27 -12.22 6.22 99.48 0.62 -11.60 16 21 C 0.10 3.83 5.40 83.26 0.45 4.28 16 22 C 0.16 3.42 10.67 85.41 0.91 4.33 16 23 N -0.50 -11.83 10.30 -187.69 -1.93 -13.77 16 24 C 0.12 2.57 6.61 40.29 0.27 2.84 16 25 C -0.12 -1.93 9.97 22.34 0.22 -1.71 16 26 C -0.08 -0.78 9.94 22.05 0.22 -0.56 16 27 C -0.12 -1.04 9.96 22.05 0.22 -0.82 16 28 C -0.09 -1.20 9.32 22.34 0.21 -0.99 16 29 C -0.13 -2.53 5.74 -21.28 -0.12 -2.65 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 1.07 6.23 -2.38 -0.01 1.05 16 32 H 0.09 1.92 5.93 -2.39 -0.01 1.90 16 33 H 0.41 6.94 6.67 -92.71 -0.62 6.32 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.47 7.48 -2.39 -0.02 1.45 16 36 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 40 H 0.25 16.26 8.73 -92.71 -0.81 15.45 16 41 H 0.04 1.75 7.80 -2.39 -0.02 1.73 16 42 H 0.04 1.75 4.15 -2.39 -0.01 1.74 16 43 H 0.18 2.80 6.42 -2.91 -0.02 2.78 16 44 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 45 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 46 H 0.16 0.37 8.06 -2.91 -0.02 0.34 16 47 H 0.16 1.23 6.32 -2.91 -0.02 1.22 16 Total: -1.00 -79.74 374.05 1.46 -78.28 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.23 Total: 14.79 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 6.16 Total: -3.50 kcal Atomic # 7 Polarization: -123.15 SS G_CDS: -6.60 Total: -129.74 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.05 Total: -16.43 kcal Atomic # 14 Polarization: 54.88 SS G_CDS: 1.72 Total: 56.60 kcal Total: -79.74 1.46 -78.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970177639.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.536 kcal (2) G-P(sol) polarization free energy of solvation -79.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds