Wall clock time and date at job start Sat Apr 11 2020 05:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99928 * 2 1 4 4 H 1.48497 * 109.47003 * 269.99749 * 3 2 1 5 5 H 1.48504 * 109.47158 * 30.00262 * 3 2 1 6 6 H 1.48500 * 109.47022 * 149.99727 * 3 2 1 7 7 C 1.38808 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00020 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00368 * 0.02562 * 7 2 1 10 10 C 1.46491 * 120.00066 * 179.97438 * 9 7 2 11 11 H 1.08991 * 109.47703 * 34.99798 * 10 9 7 12 12 C 1.53001 * 109.47219 * 274.99530 * 10 9 7 13 13 C 1.52996 * 109.47349 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46993 * 60.00188 * 13 12 10 15 15 C 1.52999 * 109.47283 * 300.00062 * 14 13 12 16 16 H 1.08999 * 109.46965 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47136 * 299.99920 * 15 14 13 18 18 C 1.34777 * 119.99665 * 275.27771 * 17 15 14 19 19 O 1.21563 * 120.00283 * 359.72077 * 18 17 15 20 20 C 1.47774 * 119.99699 * 179.72378 * 18 17 15 21 21 C 1.40651 * 119.69694 * 359.72905 * 20 18 17 22 22 C 1.35849 * 120.87107 * 179.71096 * 21 20 18 23 23 C 1.40396 * 119.84622 * 0.54977 * 22 21 20 24 24 C 1.40636 * 121.96923 * 179.72135 * 23 22 21 25 25 C 1.36220 * 118.72900 * 180.02562 * 24 23 22 26 26 N 1.32596 * 121.89823 * 359.96421 * 25 24 23 27 27 C 1.31238 * 122.74568 * 0.02562 * 26 25 24 28 28 C 1.40551 * 119.88549 * 0.02562 * 27 26 25 29 29 C 1.38565 * 119.69758 * 179.97438 * 20 18 17 30 30 C 1.52999 * 109.46645 * 60.00091 * 15 14 13 31 31 H 0.97001 * 119.99912 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99234 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.47539 * 300.00558 * 12 10 9 34 34 H 1.09006 * 109.47137 * 60.00177 * 12 10 9 35 35 H 1.08997 * 109.47425 * 180.02562 * 13 12 10 36 36 H 1.08996 * 109.47216 * 300.00101 * 13 12 10 37 37 H 1.08999 * 109.47149 * 179.97438 * 14 13 12 38 38 H 1.09005 * 109.46687 * 60.00195 * 14 13 12 39 39 H 0.97001 * 119.99790 * 94.99484 * 17 15 14 40 40 H 1.07998 * 119.56575 * 359.97238 * 21 20 18 41 41 H 1.08000 * 120.07484 * 180.27866 * 22 21 20 42 42 H 1.07992 * 120.63744 * 0.05439 * 24 23 22 43 43 H 1.08002 * 119.05009 * 179.97438 * 25 24 23 44 44 H 1.07994 * 120.05607 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.34692 * 359.97438 * 29 20 18 46 46 H 1.08991 * 109.47925 * 60.00157 * 30 15 14 47 47 H 1.09009 * 109.46506 * 180.02562 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9687 -3.5506 0.5899 12 6 2.4219 -4.0356 -1.4365 13 6 3.1863 -5.3609 -1.4366 14 6 2.3086 -6.4560 -0.8271 15 6 1.9448 -6.0772 0.6099 16 1 1.3191 -6.8571 1.0439 17 7 3.1688 -5.9350 1.4023 18 6 3.7379 -7.0200 1.9637 19 8 3.2327 -8.1160 1.8169 20 6 4.9759 -6.8775 2.7579 21 6 5.5580 -5.6072 2.9189 22 6 6.6927 -5.4479 3.6488 23 6 7.3034 -6.5635 4.2433 24 6 8.4816 -6.4508 5.0030 25 6 9.0184 -7.5770 5.5498 26 7 8.4619 -8.7693 5.3858 27 6 7.3635 -8.9505 4.6908 28 6 6.7299 -7.8527 4.0836 29 6 5.5554 -7.9971 3.3328 30 6 1.1803 -4.7519 0.6099 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 1.5111 -4.1419 -2.0260 34 1 3.0468 -3.2553 -1.8709 35 1 3.4459 -5.6306 -2.4603 36 1 4.0970 -5.2551 -0.8471 37 1 2.8531 -7.4003 -0.8276 38 1 1.3979 -6.5618 -1.4167 39 1 3.5719 -5.0605 1.5193 40 1 5.0946 -4.7466 2.4598 41 1 7.1262 -4.4660 3.7678 42 1 8.9514 -5.4897 5.1505 43 1 9.9233 -7.4965 6.1338 44 1 6.9478 -9.9416 4.5849 45 1 5.1068 -8.9710 3.2035 46 1 0.2697 -4.8576 0.0204 47 1 0.9215 -4.4818 1.6338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981442692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:33 Heat of formation + Delta-G solvation = 17.372371 kcal Electronic energy + Delta-G solvation = -28614.227815 eV Core-core repulsion = 24761.213366 eV Total energy + Delta-G solvation = -3853.014449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.24434 -40.13382 -38.24148 -37.11239 -34.58001 -33.32749 -33.24251 -31.66838 -31.18502 -30.15642 -29.42917 -27.91484 -25.11729 -24.26577 -23.77434 -22.70876 -22.12260 -21.49953 -21.02709 -19.00058 -18.57486 -18.06609 -17.23287 -16.94185 -16.12740 -15.61843 -15.49893 -15.30663 -15.01611 -14.54092 -14.43822 -14.33892 -14.08027 -13.90047 -13.76268 -13.58439 -13.43812 -13.10005 -12.57009 -12.30658 -12.25566 -12.08374 -11.91103 -11.76639 -11.60847 -11.05614 -10.93135 -10.83342 -10.56614 -10.43590 -10.25431 -10.22348 -10.10166 -9.80830 -9.80327 -9.57992 -9.49072 -9.01975 -8.90485 -8.44197 -7.03040 -5.83225 -3.12479 -0.11681 0.36882 1.46358 2.29508 3.10304 3.17606 3.37911 3.42833 3.45000 3.75646 4.02762 4.16975 4.31576 4.38421 4.50988 4.55854 4.67335 4.77591 4.85544 5.00498 5.05318 5.12854 5.22650 5.32222 5.41997 5.44235 5.52322 5.55193 5.59987 5.64286 5.70924 5.81827 5.90719 5.93174 5.99942 6.01081 6.05384 6.19388 6.23258 6.24635 6.35984 6.44039 6.51593 6.59367 6.66275 6.87869 7.02633 7.49469 7.58270 7.62067 8.14880 8.35065 9.46347 10.03623 10.37931 11.39246 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012291 B = 0.002715 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.462537 B =10312.110054 C =12046.002327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.724 5.724 10 C 0.181 3.819 11 H 0.039 0.961 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.128 4.128 15 C 0.151 3.849 16 H 0.086 0.914 17 N -0.710 5.710 18 C 0.557 3.443 19 O -0.542 6.542 20 C -0.132 4.132 21 C -0.070 4.070 22 C -0.116 4.116 23 C -0.008 4.008 24 C -0.159 4.159 25 C 0.082 3.918 26 N -0.493 5.493 27 C 0.158 3.842 28 C -0.124 4.124 29 C -0.018 4.018 30 C -0.135 4.135 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.402 0.598 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.154 0.846 44 H 0.167 0.833 45 H 0.149 0.851 46 H 0.078 0.922 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.916 -15.879 7.127 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.365 5.365 10 C 0.071 3.929 11 H 0.057 0.943 12 C -0.178 4.178 13 C -0.154 4.154 14 C -0.166 4.166 15 C 0.047 3.953 16 H 0.104 0.896 17 N -0.362 5.362 18 C 0.344 3.656 19 O -0.421 6.421 20 C -0.136 4.136 21 C -0.089 4.089 22 C -0.134 4.134 23 C -0.014 4.014 24 C -0.178 4.178 25 C -0.061 4.061 26 N -0.201 5.201 27 C -0.014 4.014 28 C -0.127 4.127 29 C -0.039 4.039 30 C -0.173 4.173 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.240 0.760 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.171 0.829 44 H 0.184 0.816 45 H 0.166 0.834 46 H 0.097 0.903 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.159 -17.087 7.486 23.420 hybrid contribution -0.038 2.338 -0.473 2.385 sum 14.121 -14.749 7.014 21.590 Atomic orbital electron populations 1.69658 1.05104 1.25709 1.57469 1.24744 0.95499 0.97691 1.02932 0.86222 0.78636 0.83965 0.77534 1.21731 1.21779 1.20785 1.19199 0.90894 0.84096 1.42940 0.91266 1.42421 1.05807 0.99660 1.88593 1.20133 0.93800 0.86026 0.92931 0.94287 1.22297 0.99850 0.95176 1.00459 1.21506 0.98428 0.95645 0.99803 1.21902 1.00668 0.98621 0.95420 1.20999 0.84943 0.98522 0.90846 0.89589 1.46152 1.27905 1.10190 1.51995 1.18169 0.83756 0.84613 0.79104 1.90760 1.63956 1.25807 1.61527 1.20029 0.97222 0.94246 1.02060 1.21139 0.95019 0.96487 0.96294 1.20906 0.96156 0.98222 0.98070 1.18314 0.94465 0.93098 0.95478 1.21961 0.96087 1.00801 0.98994 1.22261 0.99136 0.87525 0.97175 1.67481 1.10694 1.26136 1.15755 1.23321 0.89973 0.98108 0.89998 1.19010 0.97492 0.94560 1.01589 1.21438 0.91891 0.99212 0.91374 1.22145 0.99354 0.93495 1.02333 0.93467 0.78209 0.92477 0.92053 0.92785 0.92717 0.92018 0.91012 0.75998 0.84799 0.84331 0.84170 0.82866 0.81604 0.83368 0.90346 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.28 13.06 55.49 0.72 -26.55 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.63 29.55 -169.99 -5.02 16.60 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 8 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 9 N -0.72 -16.93 5.12 -53.43 -0.27 -17.20 16 10 C 0.18 3.21 2.60 -67.93 -0.18 3.04 16 11 H 0.04 0.68 6.44 -51.93 -0.33 0.35 16 12 C -0.14 -2.27 5.50 -26.73 -0.15 -2.41 16 13 C -0.12 -1.55 5.77 -26.73 -0.15 -1.70 16 14 C -0.13 -1.64 5.60 -26.73 -0.15 -1.79 16 15 C 0.15 2.01 2.78 -67.93 -0.19 1.82 16 16 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 17 N -0.71 -8.87 4.18 -54.77 -0.23 -9.10 16 18 C 0.56 7.32 7.73 -12.36 -0.10 7.22 16 19 O -0.54 -8.56 15.96 5.31 0.08 -8.48 16 20 C -0.13 -1.47 5.87 -104.97 -0.62 -2.09 16 21 C -0.07 -0.68 9.44 -39.53 -0.37 -1.05 16 22 C -0.12 -1.02 9.77 -39.63 -0.39 -1.41 16 23 C -0.01 -0.08 5.75 -106.74 -0.61 -0.69 16 24 C -0.16 -1.26 9.87 -39.40 -0.39 -1.64 16 25 C 0.08 0.68 11.07 -17.95 -0.20 0.48 16 26 N -0.49 -4.88 10.30 -13.12 -0.14 -5.01 16 27 C 0.16 1.40 11.05 -16.93 -0.19 1.22 16 28 C -0.12 -1.21 5.74 -106.87 -0.61 -1.83 16 29 C -0.02 -0.19 9.37 -38.75 -0.36 -0.55 16 30 C -0.13 -2.02 5.07 -26.73 -0.14 -2.15 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.38 9.68 7.80 -40.82 -0.32 9.37 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.72 7.60 -51.93 -0.39 0.32 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.40 4.70 4.84 -40.82 -0.20 4.51 16 40 H 0.13 1.15 6.34 -52.49 -0.33 0.82 16 41 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.15 1.38 7.61 -52.48 -0.40 0.98 16 46 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -31.98 381.49 -10.71 -42.69 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -6.57 Total: 11.74 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -5.03 Total: -10.44 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.09 Total: -57.86 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.98 -10.71 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981442692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.063 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds