Wall clock time and date at job start Sat Apr 11 2020 05:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99928 * 2 1 4 4 H 1.48497 * 109.47003 * 269.99749 * 3 2 1 5 5 H 1.48504 * 109.47158 * 30.00262 * 3 2 1 6 6 H 1.48500 * 109.47022 * 149.99727 * 3 2 1 7 7 C 1.38808 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00020 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00368 * 0.02562 * 7 2 1 10 10 C 1.46491 * 120.00066 * 179.97438 * 9 7 2 11 11 H 1.08991 * 109.47703 * 34.99798 * 10 9 7 12 12 C 1.53001 * 109.47219 * 274.99530 * 10 9 7 13 13 C 1.52996 * 109.47349 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46993 * 60.00188 * 13 12 10 15 15 C 1.52999 * 109.47283 * 300.00062 * 14 13 12 16 16 H 1.08999 * 109.46965 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47136 * 299.99920 * 15 14 13 18 18 C 1.34777 * 119.99665 * 275.27771 * 17 15 14 19 19 O 1.21563 * 120.00283 * 359.72077 * 18 17 15 20 20 C 1.47774 * 119.99699 * 179.72378 * 18 17 15 21 21 C 1.40651 * 119.69694 * 359.72905 * 20 18 17 22 22 C 1.35849 * 120.87107 * 179.71096 * 21 20 18 23 23 C 1.40396 * 119.84622 * 0.54977 * 22 21 20 24 24 C 1.40636 * 121.96923 * 179.72135 * 23 22 21 25 25 C 1.36220 * 118.72900 * 180.02562 * 24 23 22 26 26 N 1.32596 * 121.89823 * 359.96421 * 25 24 23 27 27 C 1.31238 * 122.74568 * 0.02562 * 26 25 24 28 28 C 1.40551 * 119.88549 * 0.02562 * 27 26 25 29 29 C 1.38565 * 119.69758 * 179.97438 * 20 18 17 30 30 C 1.52999 * 109.46645 * 60.00091 * 15 14 13 31 31 H 0.97001 * 119.99912 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99234 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.47539 * 300.00558 * 12 10 9 34 34 H 1.09006 * 109.47137 * 60.00177 * 12 10 9 35 35 H 1.08997 * 109.47425 * 180.02562 * 13 12 10 36 36 H 1.08996 * 109.47216 * 300.00101 * 13 12 10 37 37 H 1.08999 * 109.47149 * 179.97438 * 14 13 12 38 38 H 1.09005 * 109.46687 * 60.00195 * 14 13 12 39 39 H 0.97001 * 119.99790 * 94.99484 * 17 15 14 40 40 H 1.07998 * 119.56575 * 359.97238 * 21 20 18 41 41 H 1.08000 * 120.07484 * 180.27866 * 22 21 20 42 42 H 1.07992 * 120.63744 * 0.05439 * 24 23 22 43 43 H 1.08002 * 119.05009 * 179.97438 * 25 24 23 44 44 H 1.07994 * 120.05607 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.34692 * 359.97438 * 29 20 18 46 46 H 1.08991 * 109.47925 * 60.00157 * 30 15 14 47 47 H 1.09009 * 109.46506 * 180.02562 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9687 -3.5506 0.5899 12 6 2.4219 -4.0356 -1.4365 13 6 3.1863 -5.3609 -1.4366 14 6 2.3086 -6.4560 -0.8271 15 6 1.9448 -6.0772 0.6099 16 1 1.3191 -6.8571 1.0439 17 7 3.1688 -5.9350 1.4023 18 6 3.7379 -7.0200 1.9637 19 8 3.2327 -8.1160 1.8169 20 6 4.9759 -6.8775 2.7579 21 6 5.5580 -5.6072 2.9189 22 6 6.6927 -5.4479 3.6488 23 6 7.3034 -6.5635 4.2433 24 6 8.4816 -6.4508 5.0030 25 6 9.0184 -7.5770 5.5498 26 7 8.4619 -8.7693 5.3858 27 6 7.3635 -8.9505 4.6908 28 6 6.7299 -7.8527 4.0836 29 6 5.5554 -7.9971 3.3328 30 6 1.1803 -4.7519 0.6099 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 1.5111 -4.1419 -2.0260 34 1 3.0468 -3.2553 -1.8709 35 1 3.4459 -5.6306 -2.4603 36 1 4.0970 -5.2551 -0.8471 37 1 2.8531 -7.4003 -0.8276 38 1 1.3979 -6.5618 -1.4167 39 1 3.5719 -5.0605 1.5193 40 1 5.0946 -4.7466 2.4598 41 1 7.1262 -4.4660 3.7678 42 1 8.9514 -5.4897 5.1505 43 1 9.9233 -7.4965 6.1338 44 1 6.9478 -9.9416 4.5849 45 1 5.1068 -8.9710 3.2035 46 1 0.2697 -4.8576 0.0204 47 1 0.9215 -4.4818 1.6338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981442692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:32 Heat of formation + Delta-G solvation = -1.072919 kcal Electronic energy + Delta-G solvation = -28615.027662 eV Core-core repulsion = 24761.213366 eV Total energy + Delta-G solvation = -3853.814297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.99146 -41.13747 -39.38299 -37.94011 -36.16228 -34.55553 -34.00826 -32.98046 -32.40207 -30.97816 -30.48836 -29.46955 -25.95965 -25.60486 -24.96207 -23.53471 -23.18836 -22.59318 -22.26273 -20.21082 -19.55853 -19.05995 -18.71247 -17.72748 -17.12190 -16.76518 -16.56171 -16.32190 -16.01189 -15.94607 -15.45746 -15.26262 -15.04221 -14.96777 -14.85202 -14.76501 -14.52767 -14.24085 -13.90713 -13.54502 -13.10143 -13.09762 -13.00685 -12.89599 -12.85145 -12.75522 -12.30934 -12.22646 -12.04603 -11.94314 -11.59681 -11.45986 -11.24557 -11.10867 -11.00067 -10.83069 -10.51663 -10.26456 -10.02311 -9.12132 -8.97163 -7.91173 -5.18996 -0.81657 -0.34736 0.76953 1.49285 1.49786 1.50279 1.58152 2.11048 2.32774 2.58140 3.04909 3.42456 3.44844 3.48397 3.60283 3.64856 3.70602 3.86328 3.87974 3.92833 3.99410 4.05947 4.26909 4.30647 4.32601 4.36601 4.55918 4.63642 4.66312 4.68178 4.72555 4.77543 4.80585 4.88524 4.93663 4.97201 5.10679 5.16071 5.20198 5.23654 5.31295 5.37701 5.47217 5.51957 5.56212 5.60057 5.66573 5.70253 6.30951 6.48353 6.94366 7.13503 7.37355 8.14138 8.36034 9.32361 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012291 B = 0.002715 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.462537 B =10312.110054 C =12046.002327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.967 3.033 4 H -0.292 1.292 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.737 5.737 10 C 0.178 3.822 11 H 0.047 0.953 12 C -0.128 4.128 13 C -0.105 4.105 14 C -0.122 4.122 15 C 0.159 3.841 16 H 0.085 0.915 17 N -0.706 5.706 18 C 0.559 3.441 19 O -0.573 6.573 20 C -0.148 4.148 21 C -0.078 4.078 22 C -0.112 4.112 23 C -0.022 4.022 24 C -0.157 4.157 25 C 0.073 3.927 26 N -0.514 5.514 27 C 0.152 3.848 28 C -0.136 4.136 29 C -0.017 4.017 30 C -0.122 4.122 31 H 0.249 0.751 32 H 0.372 0.628 33 H 0.048 0.952 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.407 0.593 40 H 0.142 0.858 41 H 0.163 0.837 42 H 0.168 0.832 43 H 0.178 0.822 44 H 0.187 0.813 45 H 0.151 0.849 46 H 0.078 0.922 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.250 -16.234 7.650 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.796 3.204 4 H -0.219 1.219 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.363 4.363 8 H 0.096 0.904 9 N -0.376 5.376 10 C 0.069 3.931 11 H 0.065 0.935 12 C -0.169 4.169 13 C -0.143 4.143 14 C -0.160 4.160 15 C 0.054 3.946 16 H 0.103 0.897 17 N -0.358 5.358 18 C 0.347 3.653 19 O -0.454 6.454 20 C -0.151 4.151 21 C -0.098 4.098 22 C -0.129 4.129 23 C -0.027 4.027 24 C -0.176 4.176 25 C -0.069 4.069 26 N -0.222 5.222 27 C -0.019 4.019 28 C -0.138 4.138 29 C -0.038 4.038 30 C -0.161 4.161 31 H 0.057 0.943 32 H 0.203 0.797 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.245 0.755 40 H 0.160 0.840 41 H 0.180 0.820 42 H 0.186 0.814 43 H 0.195 0.805 44 H 0.204 0.796 45 H 0.169 0.831 46 H 0.097 0.903 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.546 -17.471 8.009 25.360 hybrid contribution -0.675 2.351 -0.586 2.515 sum 15.871 -15.120 7.423 23.143 Atomic orbital electron populations 1.69814 1.06595 1.25806 1.59962 1.25505 0.96269 1.00934 1.04276 0.85232 0.77924 0.79986 0.77209 1.21900 1.22723 1.19029 1.19602 0.91437 0.85077 1.40207 0.90369 1.42646 1.05461 1.00955 1.88579 1.20365 0.94013 0.84634 0.94061 0.93522 1.22121 0.99502 0.96383 0.98849 1.21410 0.98175 0.93801 1.00926 1.21857 1.00950 0.98305 0.94924 1.20865 0.85145 0.97130 0.91466 0.89729 1.46085 1.27543 1.10413 1.51773 1.18443 0.84074 0.84053 0.78721 1.90739 1.65009 1.26868 1.62760 1.19934 0.96888 0.95317 1.02966 1.21227 0.95538 0.96091 0.96894 1.21176 0.95572 0.99129 0.97045 1.18632 0.95161 0.93168 0.95783 1.22260 0.95360 1.01982 0.97997 1.22741 0.99825 0.87210 0.97141 1.67531 1.11160 1.27206 1.16293 1.23665 0.89774 0.98902 0.89544 1.19133 0.97508 0.95291 1.01901 1.21511 0.92021 0.99179 0.91131 1.21985 0.99112 0.93434 1.01575 0.94264 0.79664 0.93359 0.93927 0.91407 0.92063 0.91842 0.90209 0.75463 0.84000 0.81958 0.81426 0.80459 0.79640 0.83132 0.90306 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.92 13.06 21.65 0.28 -57.64 16 2 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.97 44.51 29.55 68.60 2.03 46.53 16 4 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.23 -12.04 9.93 84.03 0.83 -11.21 16 8 H 0.08 3.86 7.83 -2.91 -0.02 3.83 16 9 N -0.74 -34.50 5.12 -322.95 -1.65 -36.16 16 10 C 0.18 6.16 2.60 44.99 0.12 6.27 16 11 H 0.05 1.56 6.44 -2.39 -0.02 1.55 16 12 C -0.13 -4.11 5.50 30.59 0.17 -3.94 16 13 C -0.10 -2.61 5.77 30.59 0.18 -2.43 16 14 C -0.12 -2.92 5.60 30.59 0.17 -2.74 16 15 C 0.16 4.03 2.78 44.99 0.13 4.15 16 16 H 0.08 2.24 7.58 -2.39 -0.02 2.23 16 17 N -0.71 -16.83 4.18 -445.48 -1.86 -18.69 16 18 C 0.56 14.26 7.73 86.77 0.67 14.93 16 19 O -0.57 -17.86 15.96 -3.91 -0.06 -17.93 16 20 C -0.15 -3.16 5.87 -20.09 -0.12 -3.28 16 21 C -0.08 -1.39 9.44 22.30 0.21 -1.18 16 22 C -0.11 -1.72 9.77 22.24 0.22 -1.51 16 23 C -0.02 -0.38 5.75 -21.24 -0.12 -0.50 16 24 C -0.16 -2.07 9.87 22.39 0.22 -1.85 16 25 C 0.07 1.05 11.07 84.11 0.93 1.98 16 26 N -0.51 -9.38 10.30 -195.41 -2.01 -11.40 16 27 C 0.15 2.54 11.05 85.35 0.94 3.48 16 28 C -0.14 -2.50 5.74 -21.32 -0.12 -2.62 16 29 C -0.02 -0.35 9.37 22.81 0.21 -0.13 16 30 C -0.12 -3.59 5.07 30.60 0.16 -3.44 16 31 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 32 H 0.37 19.07 7.80 -92.71 -0.72 18.34 16 33 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.04 1.51 8.14 -2.38 -0.02 1.50 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.46 7.60 -2.39 -0.02 1.44 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.41 8.94 4.84 -92.71 -0.45 8.49 16 40 H 0.14 2.20 6.34 -2.91 -0.02 2.18 16 41 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 42 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 43 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 44 H 0.19 2.07 8.06 -2.91 -0.02 2.04 16 45 H 0.15 2.77 7.61 -2.91 -0.02 2.75 16 46 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -68.60 381.49 1.81 -66.79 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: -0.17 Total: 36.33 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 5.26 Total: -7.84 kcal Atomic # 7 Polarization: -118.64 SS G_CDS: -5.25 Total: -123.89 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.06 Total: -17.93 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -68.60 1.81 -66.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981442692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.719 kcal (2) G-P(sol) polarization free energy of solvation -68.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds