Wall clock time and date at job start Sat Apr 11 2020 05:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36535 * 120.09163 * 2 1 4 4 C 1.40713 * 118.24351 * 179.97438 * 3 2 1 5 5 C 1.40432 * 121.28058 * 180.02562 * 4 3 2 6 6 C 1.36131 * 119.64417 * 180.02562 * 5 4 3 7 7 C 1.39431 * 120.92251 * 359.86144 * 6 5 4 8 8 C 1.35990 * 121.09079 * 0.09290 * 7 6 5 9 9 C 1.40832 * 119.73406 * 359.97438 * 8 7 6 10 10 N 1.33247 * 120.99105 * 180.02562 * 9 8 7 11 11 C 1.31905 * 121.29930 * 179.72295 * 10 9 8 12 12 C 1.48270 * 119.24040 * 180.25928 * 11 10 9 13 13 O 1.21502 * 119.99916 * 255.65798 * 12 11 10 14 14 N 1.34773 * 120.00153 * 75.65916 * 12 11 10 15 15 C 1.48214 * 119.97284 * 184.56502 * 14 12 11 16 16 C 1.47140 * 110.34527 * 102.46289 * 15 14 12 17 17 C 1.53804 * 111.83494 * 58.29605 * 16 15 14 18 18 N 1.43461 * 107.96537 * 281.66730 * 17 16 15 19 19 C 1.36931 * 118.94431 * 273.63439 * 18 17 16 20 20 H 1.08003 * 120.00186 * 28.54590 * 19 18 17 21 21 C 1.38813 * 120.00132 * 208.54117 * 19 18 17 22 22 N 1.31622 * 119.99787 * 9.74791 * 21 19 18 23 23 Si 1.86800 * 120.00083 * 189.74094 * 21 19 18 24 24 H 1.48500 * 109.47009 * 60.00577 * 23 21 19 25 25 H 1.48506 * 109.47021 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47114 * 300.00081 * 23 21 19 27 27 C 1.48863 * 122.11672 * 93.65329 * 18 17 16 28 28 C 1.43619 * 119.97095 * 4.28949 * 14 12 11 29 29 H 1.09006 * 109.47221 * 85.57589 * 1 2 3 30 30 H 1.09001 * 109.47367 * 205.57531 * 1 2 3 31 31 H 1.09000 * 109.47433 * 325.57655 * 1 2 3 32 32 H 1.07997 * 120.87609 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.17578 * 359.92768 * 5 4 3 34 34 H 1.08007 * 119.53520 * 179.97438 * 6 5 4 35 35 H 1.08007 * 119.45525 * 180.02562 * 7 6 5 36 36 H 1.07998 * 120.13451 * 179.97438 * 8 7 6 37 37 H 1.09010 * 109.32274 * 222.73163 * 15 14 12 38 38 H 1.09001 * 109.32672 * 342.37216 * 15 14 12 39 39 H 1.09003 * 109.00482 * 178.90064 * 16 15 14 40 40 H 1.08991 * 109.00846 * 297.76895 * 16 15 14 41 41 H 1.08994 * 109.76322 * 41.29277 * 17 16 15 42 42 H 1.09000 * 109.75735 * 162.00504 * 17 16 15 43 43 H 0.96997 * 119.99870 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.47820 * 80.58138 * 27 18 17 45 45 H 1.08999 * 109.48261 * 200.61578 * 27 18 17 46 46 H 1.09004 * 108.87688 * 31.46648 * 28 14 12 47 47 H 1.08999 * 108.87741 * 149.90834 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1813 0.0000 4 6 3.5980 1.1360 0.0006 5 6 4.3655 2.3120 0.0011 6 6 5.7243 2.2293 0.0011 7 6 6.3668 0.9918 0.0035 8 6 5.6568 -0.1681 0.0039 9 6 4.2491 -0.1254 0.0025 10 7 3.5287 -1.2463 0.0035 11 6 2.2101 -1.2134 0.0077 12 6 1.4538 -2.4887 0.0144 13 8 0.9164 -2.8817 -1.0021 14 7 1.3624 -3.2121 1.1478 15 6 0.6936 -4.5346 1.1304 16 6 1.6938 -5.6138 1.1329 17 6 2.6197 -5.5327 2.3583 18 7 3.5920 -4.5072 2.1112 19 6 4.7372 -4.8294 1.4331 20 1 4.7310 -5.6366 0.7156 21 6 5.9061 -4.1184 1.6678 22 7 5.9692 -3.2683 2.6707 23 14 7.3895 -4.3681 0.5603 24 1 7.0294 -4.0153 -0.8365 25 1 8.5023 -3.4986 1.0198 26 1 7.8164 -5.7893 0.6177 27 6 3.3962 -3.1042 2.5686 28 6 1.9184 -2.7033 2.3704 29 1 -0.3634 0.0793 -1.0246 30 1 -0.3634 -0.9270 0.4436 31 1 -0.3634 0.8477 0.5809 32 1 1.6675 2.1256 -0.0004 33 1 3.8803 3.2769 0.0000 34 1 6.3128 3.1349 0.0011 35 1 7.4462 0.9538 0.0038 36 1 6.1704 -1.1181 0.0053 37 1 0.0585 -4.6293 2.0113 38 1 0.0803 -4.6168 0.2330 39 1 1.1792 -6.5746 1.1396 40 1 2.2971 -5.5407 0.2281 41 1 2.0369 -5.2823 3.2447 42 1 3.1211 -6.4893 2.5052 43 1 6.7861 -2.7718 2.8349 44 1 3.6572 -3.0263 3.6241 45 1 4.0343 -2.4396 1.9862 46 1 1.8511 -1.6154 2.3626 47 1 1.3353 -3.0847 3.2086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981638793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:55 Heat of formation + Delta-G solvation = 59.078582 kcal Electronic energy + Delta-G solvation = -31268.208827 eV Core-core repulsion = 27417.002895 eV Total energy + Delta-G solvation = -3851.205932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.94675 -39.46593 -37.24661 -36.57825 -34.16154 -33.95890 -32.68472 -31.53883 -30.79182 -30.04211 -27.58314 -27.01192 -25.82499 -24.58200 -23.58166 -22.49178 -21.93881 -21.86189 -19.68535 -19.22275 -17.83432 -17.32115 -16.67447 -16.25326 -16.16788 -15.38649 -15.05174 -14.46541 -14.33118 -14.21095 -14.03280 -13.82101 -13.56513 -13.18338 -13.11430 -13.05815 -12.93603 -12.90507 -12.36644 -12.23238 -12.17322 -11.73434 -11.43833 -11.39738 -11.33648 -11.30369 -10.87744 -10.69969 -10.50819 -10.26694 -10.19263 -10.07355 -9.85055 -9.66563 -9.57616 -9.02111 -8.47142 -8.35799 -8.06325 -8.03740 -6.52785 -5.66299 -3.10994 0.53172 0.88206 2.17475 2.75533 3.09046 3.42677 3.46044 3.46625 3.52201 4.27331 4.47652 4.58458 4.61603 4.78456 4.83817 4.98019 5.12002 5.17823 5.34771 5.38875 5.41863 5.50566 5.56162 5.59549 5.63172 5.72093 5.82484 5.85046 5.96657 5.98596 6.10080 6.11602 6.17868 6.19725 6.25619 6.37122 6.48155 6.50163 6.57037 6.59018 6.69325 6.88192 6.92494 6.98678 7.13041 7.48584 7.70711 7.89908 7.96536 8.12944 8.53595 8.59841 9.33798 10.00904 10.47204 11.41731 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008990 B = 0.006982 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.910202 B = 4009.628503 C = 6369.739867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.111 4.111 3 C -0.071 4.071 4 C -0.090 4.090 5 C -0.110 4.110 6 C -0.107 4.107 7 C -0.117 4.117 8 C -0.062 4.062 9 C 0.127 3.873 10 N -0.401 5.401 11 C 0.131 3.869 12 C 0.585 3.415 13 O -0.544 6.544 14 N -0.569 5.569 15 C 0.130 3.870 16 C -0.172 4.172 17 C 0.163 3.837 18 N -0.586 5.586 19 C -0.244 4.244 20 H 0.058 0.942 21 C 0.015 3.985 22 N -0.906 5.906 23 Si 0.889 3.111 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.161 3.839 28 C 0.081 3.919 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.140 0.860 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.139 0.861 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.031 0.969 42 H 0.046 0.954 43 H 0.251 0.749 44 H 0.035 0.965 45 H 0.097 0.903 46 H 0.056 0.944 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.179 11.144 -1.328 13.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.114 4.114 3 C -0.096 4.096 4 C -0.092 4.092 5 C -0.129 4.129 6 C -0.125 4.125 7 C -0.137 4.137 8 C -0.081 4.081 9 C 0.005 3.995 10 N -0.109 5.109 11 C -0.025 4.025 12 C 0.370 3.630 13 O -0.421 6.421 14 N -0.299 5.299 15 C 0.009 3.991 16 C -0.213 4.213 17 C 0.034 3.966 18 N -0.308 5.308 19 C -0.374 4.374 20 H 0.076 0.924 21 C -0.183 4.183 22 N -0.551 5.551 23 Si 0.720 3.280 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.035 3.965 28 C -0.045 4.045 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.157 0.843 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.157 0.843 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.115 0.885 46 H 0.075 0.925 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.793 10.240 -1.760 12.988 hybrid contribution 0.674 0.670 -0.494 1.072 sum -7.118 10.911 -2.255 13.221 Atomic orbital electron populations 1.20764 0.89924 1.02996 1.02992 1.20435 0.97545 0.92704 1.00709 1.21139 0.92494 0.97905 0.98112 1.18926 0.94068 0.94624 1.01620 1.20859 0.94026 0.96737 1.01265 1.20910 0.94607 0.97792 0.99188 1.20871 1.00407 0.91974 1.00399 1.21022 0.91421 0.99678 0.95933 1.18918 0.94275 0.87450 0.98902 1.68145 1.05444 1.29657 1.07680 1.21116 0.90369 0.93214 0.97784 1.17818 0.79036 0.82677 0.83425 1.90724 1.47966 1.70919 1.32504 1.47293 1.55179 1.18573 1.08837 1.20622 0.94785 0.81767 1.01948 1.21917 0.99014 0.96425 1.03979 1.20280 0.90631 0.92921 0.92776 1.43549 1.18727 1.03005 1.65473 1.19004 0.86584 1.16402 1.15450 0.92404 1.24915 0.96902 0.99762 0.96704 1.69955 1.26751 1.29529 1.28899 0.86575 0.82868 0.77629 0.80967 1.20900 1.21625 1.21130 1.21975 0.88972 0.86756 0.98771 1.22129 0.99585 0.97497 0.85292 0.90392 0.91381 0.90988 0.84250 0.85553 0.85804 0.85449 0.84316 0.91812 0.90279 0.92521 0.91271 0.95025 0.93614 0.93929 0.94688 0.88455 0.92549 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.67 36.01 0.35 -0.99 16 2 C -0.11 -1.72 5.89 -104.48 -0.62 -2.33 16 3 C -0.07 -0.96 9.54 -39.26 -0.37 -1.33 16 4 C -0.09 -1.39 5.75 -106.72 -0.61 -2.00 16 5 C -0.11 -1.35 9.77 -39.51 -0.39 -1.74 16 6 C -0.11 -1.28 9.95 -39.89 -0.40 -1.68 16 7 C -0.12 -1.66 9.94 -39.94 -0.40 -2.06 16 8 C -0.06 -1.13 9.99 -39.41 -0.39 -1.52 16 9 C 0.13 2.42 6.61 -84.85 -0.56 1.86 16 10 N -0.40 -8.59 8.64 -7.54 -0.07 -8.66 16 11 C 0.13 2.56 4.63 -82.96 -0.38 2.17 16 12 C 0.58 12.01 5.60 -12.14 -0.07 11.94 16 13 O -0.54 -12.22 16.53 5.36 0.09 -12.13 16 14 N -0.57 -10.85 2.47 -177.92 -0.44 -11.29 16 15 C 0.13 2.21 5.72 -5.91 -0.03 2.18 16 16 C -0.17 -3.18 5.64 -29.13 -0.16 -3.35 16 17 C 0.16 3.35 5.63 -5.23 -0.03 3.32 16 18 N -0.59 -14.39 2.53 -172.29 -0.44 -14.82 16 19 C -0.24 -6.72 9.25 -15.06 -0.14 -6.86 16 20 H 0.06 1.62 7.85 -52.48 -0.41 1.21 16 21 C 0.02 0.42 5.04 -17.43 -0.09 0.33 16 22 N -0.91 -25.41 10.85 55.49 0.60 -24.81 16 23 Si 0.89 22.01 29.56 -169.99 -5.03 16.99 16 24 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 27 C 0.16 3.76 5.11 -2.00 -0.01 3.75 16 28 C 0.08 1.52 4.98 -4.84 -0.02 1.50 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.91 6.87 -51.93 -0.36 0.55 16 31 H 0.07 0.67 8.11 -51.93 -0.42 0.24 16 32 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 35 H 0.13 1.53 8.06 -52.48 -0.42 1.10 16 36 H 0.14 2.83 8.06 -52.49 -0.42 2.41 16 37 H 0.06 0.91 8.06 -51.92 -0.42 0.49 16 38 H 0.08 1.35 7.08 -51.93 -0.37 0.98 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.53 7.90 -51.93 -0.41 1.12 16 41 H 0.03 0.60 7.58 -51.93 -0.39 0.20 16 42 H 0.05 0.96 8.02 -51.93 -0.42 0.55 16 43 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.04 0.88 7.96 -51.93 -0.41 0.47 16 45 H 0.10 2.51 4.99 -51.93 -0.26 2.25 16 46 H 0.06 1.01 6.93 -51.93 -0.36 0.65 16 47 H 0.06 1.03 7.73 -51.93 -0.40 0.63 16 LS Contribution 374.60 15.07 5.65 5.65 Total: -1.00 -32.57 374.60 -10.69 -43.26 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.73 Total: 2.63 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -4.33 Total: 3.19 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.34 Total: -59.58 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.57 -10.69 -43.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981638793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.338 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds